Wall clock time and date at job start Mon Mar 30 2020 07:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00094 * 2 1 4 4 H 1.48497 * 109.47448 * 270.00395 * 3 2 1 5 5 H 1.48507 * 109.46946 * 29.99820 * 3 2 1 6 6 H 1.48504 * 109.47327 * 149.99841 * 3 2 1 7 7 C 1.37884 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99365 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99844 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46849 * 174.19670 * 9 7 2 11 11 C 1.46896 * 110.99701 * 159.86131 * 10 9 7 12 12 C 1.53008 * 109.46976 * 189.99932 * 11 10 9 13 13 H 1.08998 * 109.95919 * 305.20271 * 12 11 10 14 14 C 1.56428 * 110.00773 * 183.93612 * 12 11 10 15 15 C 1.49468 * 99.98563 * 219.85404 * 14 12 11 16 16 H 1.09001 * 108.10469 * 290.13003 * 15 14 12 17 17 C 1.49062 * 130.06207 * 155.46755 * 15 14 12 18 18 C 1.55844 * 102.12322 * 201.04227 * 17 15 14 19 19 C 1.55557 * 105.72460 * 24.42212 * 18 17 15 20 20 C 1.52380 * 104.74222 * 7.14146 * 19 18 17 21 21 H 1.08995 * 111.55915 * 83.70823 * 20 19 18 22 22 O 1.41650 * 121.04940 * 216.91080 * 20 19 18 23 23 C 1.46892 * 111.00016 * 283.81770 * 10 9 7 24 24 C 1.53001 * 117.49943 * 138.07906 * 23 10 9 25 25 C 1.53001 * 117.50062 * 69.45530 * 23 10 9 26 26 H 0.96999 * 120.00041 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47856 * 54.19758 * 9 7 2 28 28 H 1.09002 * 109.46894 * 294.19316 * 9 7 2 29 29 H 1.08998 * 109.47179 * 70.00382 * 11 10 9 30 30 H 1.09000 * 109.47858 * 310.00142 * 11 10 9 31 31 H 1.08998 * 111.30703 * 337.53682 * 14 12 11 32 32 H 1.08994 * 111.30692 * 102.12127 * 14 12 11 33 33 H 1.08994 * 110.94657 * 319.33269 * 17 15 14 34 34 H 1.08999 * 110.94784 * 83.04610 * 17 15 14 35 35 H 1.09005 * 110.63718 * 265.17928 * 18 17 15 36 36 H 1.08991 * 109.95439 * 143.30326 * 18 17 15 37 37 H 1.09003 * 110.38401 * 248.32667 * 19 18 17 38 38 H 1.08996 * 110.48153 * 126.00315 * 19 18 17 39 39 H 1.09005 * 115.55128 * 283.78739 * 23 10 9 40 40 H 1.08997 * 117.49908 * 0.02562 * 24 23 10 41 41 H 1.09000 * 117.49777 * 145.02257 * 24 23 10 42 42 H 1.09000 * 117.50422 * 214.98378 * 25 23 10 43 43 H 1.09004 * 117.49742 * 0.02562 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.1996 -3.6121 -0.1421 11 6 1.6039 -4.8729 0.3198 12 6 2.6867 -5.9514 0.3943 13 1 3.1921 -6.0383 -0.5675 14 6 2.0486 -7.3241 0.7886 15 6 3.0972 -7.8391 1.7209 16 1 3.9814 -8.0857 1.1332 17 6 2.9907 -8.8240 2.8347 18 6 4.2457 -8.4838 3.6937 19 6 4.5868 -7.0004 3.3726 20 6 3.4302 -6.5151 2.5073 21 1 2.5831 -6.1948 3.1139 22 8 3.6479 -5.6189 1.4323 23 6 2.6719 -3.7295 -1.5281 24 6 4.1596 -4.0126 -1.7459 25 6 3.5910 -2.6267 -2.0571 26 1 -0.4850 0.8400 0.0004 27 1 0.5491 -2.5127 -0.8354 28 1 0.7043 -2.6038 0.9354 29 1 0.8275 -5.1852 -0.3787 30 1 1.1669 -4.7279 1.3077 31 1 1.0966 -7.1857 1.3010 32 1 1.9368 -7.9729 -0.0800 33 1 2.0746 -8.6700 3.4048 34 1 3.0467 -9.8455 2.4583 35 1 5.0823 -9.1284 3.4238 36 1 4.0129 -8.5948 4.7526 37 1 5.5254 -6.9373 2.8219 38 1 4.6458 -6.4154 4.2903 39 1 1.9664 -4.1760 -2.2290 40 1 4.7879 -4.1121 -0.8608 41 1 4.4332 -4.6456 -2.5901 42 1 3.4905 -2.3478 -3.1060 43 1 3.8456 -1.8142 -1.3766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720867718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:13 Heat of formation + Delta-G solvation = -23.136816 kcal Electronic energy + Delta-G solvation = -21043.192586 eV Core-core repulsion = 18088.630192 eV Total energy + Delta-G solvation = -2954.562394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62408 -39.23998 -36.76420 -35.33495 -34.39417 -32.89939 -30.20796 -28.66800 -27.93518 -25.31719 -24.16317 -23.06008 -22.13236 -21.61239 -21.02870 -20.60117 -18.57031 -18.10396 -16.75265 -16.68882 -16.44157 -15.91983 -15.79267 -15.52012 -15.13551 -14.70113 -14.29383 -14.04670 -13.80282 -13.44861 -13.30465 -13.06428 -12.88045 -12.71451 -12.61892 -12.43952 -12.32298 -12.12521 -11.93781 -11.68606 -11.55350 -11.31910 -11.24004 -11.06114 -10.99592 -10.69902 -10.53904 -10.28435 -8.95037 -8.16151 -6.23733 1.39744 1.40982 1.52492 2.40682 2.53811 3.04579 3.15310 3.25491 3.58398 3.68798 3.72510 4.04514 4.12313 4.19051 4.20519 4.26284 4.31322 4.41948 4.45184 4.54625 4.62266 4.65770 4.69014 4.76913 4.87007 4.90991 4.94297 5.00625 5.09940 5.11765 5.16419 5.19103 5.27036 5.28037 5.36539 5.39179 5.49167 5.50031 5.76738 6.09836 6.21124 6.44817 6.68873 6.91191 7.43857 8.94499 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026252 B = 0.004735 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.314828 B = 5912.504721 C = 6143.365078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.503 4.503 8 H 0.065 0.935 9 C 0.212 3.788 10 N -0.512 5.512 11 C 0.049 3.951 12 C 0.094 3.906 13 H 0.091 0.909 14 C -0.123 4.123 15 C -0.133 4.133 16 H 0.072 0.928 17 C -0.098 4.098 18 C -0.111 4.111 19 C -0.116 4.116 20 C 0.040 3.960 21 H 0.052 0.948 22 O -0.376 6.376 23 C 0.002 3.998 24 C -0.144 4.144 25 C -0.170 4.170 26 H 0.262 0.738 27 H -0.033 1.033 28 H -0.007 1.007 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.389 -19.252 2.368 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.542 4.542 8 H 0.083 0.917 9 C 0.086 3.914 10 N -0.236 5.236 11 C -0.080 4.080 12 C 0.037 3.963 13 H 0.109 0.891 14 C -0.160 4.160 15 C -0.151 4.151 16 H 0.090 0.910 17 C -0.135 4.135 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.018 4.018 21 H 0.070 0.930 22 O -0.296 6.296 23 C -0.107 4.107 24 C -0.182 4.182 25 C -0.207 4.207 26 H 0.071 0.929 27 H -0.015 1.015 28 H 0.011 0.989 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.822 -18.855 2.668 20.587 hybrid contribution -1.048 1.246 -0.423 1.682 sum 6.775 -17.609 2.245 19.000 Atomic orbital electron populations 1.70090 1.07649 1.27589 1.52681 1.25851 0.95652 1.02878 0.95287 0.85480 0.78547 0.78749 0.78467 1.19639 1.20878 1.19228 1.21486 0.93522 0.90640 1.48513 0.91711 1.19345 0.89736 0.89316 0.92995 1.61774 1.39388 1.03332 1.19070 1.22486 0.95658 0.90655 0.99178 1.23616 0.88713 0.92130 0.91883 0.89084 1.22005 0.98581 0.94762 1.00692 1.21986 0.99676 0.96589 0.96888 0.91004 1.21208 0.98746 0.98680 0.94895 1.22749 0.97875 0.93464 1.00736 1.22059 0.97243 0.97329 0.98747 1.23618 0.98257 0.89161 0.90803 0.93004 1.88598 1.56472 1.57011 1.27493 1.22210 0.93164 1.05446 0.89877 1.23016 0.94140 0.98403 1.02635 1.23045 1.03565 0.93172 1.00954 0.92917 1.01535 0.98940 0.94291 0.92872 0.90454 0.87947 0.91001 0.89391 0.89885 0.90086 0.91347 0.91292 0.90798 0.89680 0.86632 0.88498 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.05 13.29 21.45 0.28 -57.77 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.50 -29.44 7.82 25.60 0.20 -29.24 16 8 H 0.06 3.77 5.78 -2.91 -0.02 3.75 16 9 C 0.21 11.86 4.77 85.55 0.41 12.26 16 10 N -0.51 -23.55 4.55 -875.53 -3.98 -27.53 16 11 C 0.05 1.86 4.55 86.31 0.39 2.26 16 12 C 0.09 2.91 3.36 31.79 0.11 3.02 16 13 H 0.09 2.75 6.31 -2.39 -0.02 2.74 16 14 C -0.12 -2.75 6.42 30.66 0.20 -2.56 16 15 C -0.13 -2.77 2.66 -11.57 -0.03 -2.80 16 16 H 0.07 1.54 8.06 -2.39 -0.02 1.52 16 17 C -0.10 -1.50 6.66 30.32 0.20 -1.30 16 18 C -0.11 -1.64 6.93 32.46 0.22 -1.42 16 19 C -0.12 -2.51 6.70 31.27 0.21 -2.30 16 20 C 0.04 1.09 3.83 32.00 0.12 1.22 16 21 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 22 O -0.38 -13.33 11.10 -148.84 -1.65 -14.98 16 23 C 0.00 0.08 4.19 44.92 0.19 0.27 16 24 C -0.14 -4.82 9.15 30.60 0.28 -4.54 16 25 C -0.17 -6.73 9.47 30.60 0.29 -6.44 16 26 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 27 H -0.03 -2.00 7.99 -2.39 -0.02 -2.02 16 28 H -0.01 -0.45 7.73 -2.39 -0.02 -0.47 16 29 H 0.04 1.41 8.12 -2.39 -0.02 1.39 16 30 H 0.05 2.17 7.83 -2.39 -0.02 2.15 16 31 H 0.08 1.73 7.91 -2.39 -0.02 1.71 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 40 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.09 3.96 5.45 -2.39 -0.01 3.95 16 Total: -1.00 -68.47 332.95 0.89 -67.58 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.96 Total: 15.96 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.25 Total: -31.08 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -3.70 Total: -85.30 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -1.65 Total: -14.98 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -68.47 0.89 -67.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720867718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.444 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds