Wall clock time and date at job start Mon Mar 30 2020 07:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00151 * 2 1 4 4 H 1.48499 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47169 * 300.00366 * 3 2 1 6 6 H 1.48504 * 109.47068 * 60.00408 * 3 2 1 7 7 C 1.37883 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99798 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00160 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47053 * 174.22457 * 9 7 2 11 11 C 1.46902 * 110.99834 * 159.94251 * 10 9 7 12 12 C 1.52999 * 109.46949 * 189.99808 * 11 10 9 13 13 H 1.08994 * 110.36663 * 307.32730 * 12 11 10 14 14 C 1.54965 * 110.40365 * 184.99639 * 12 11 10 15 15 C 1.55102 * 101.15339 * 203.40823 * 14 12 11 16 16 H 1.09001 * 113.97425 * 155.33168 * 15 14 12 17 17 C 1.54740 * 108.25281 * 282.32050 * 15 14 12 18 18 C 1.54946 * 102.73893 * 146.08246 * 17 15 14 19 19 C 1.54353 * 103.78857 * 320.51436 * 18 17 15 20 20 C 1.53855 * 106.46106 * 26.60917 * 19 18 17 21 21 H 1.08999 * 110.80506 * 117.23282 * 20 19 18 22 22 O 1.43186 * 109.42930 * 239.70496 * 20 19 18 23 23 C 1.46902 * 111.00249 * 283.89066 * 10 9 7 24 24 C 1.53005 * 117.49751 * 137.70187 * 23 10 9 25 25 C 1.52993 * 60.00285 * 252.51535 * 24 23 10 26 26 H 0.96997 * 120.00244 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47143 * 54.22913 * 9 7 2 28 28 H 1.08993 * 109.47126 * 294.23001 * 9 7 2 29 29 H 1.09001 * 109.47380 * 70.00037 * 11 10 9 30 30 H 1.09001 * 109.47115 * 309.99765 * 11 10 9 31 31 H 1.09002 * 111.08568 * 85.43710 * 14 12 11 32 32 H 1.09003 * 111.08782 * 321.37559 * 14 12 11 33 33 H 1.08996 * 110.75794 * 27.76300 * 17 15 14 34 34 H 1.09006 * 110.75080 * 264.39186 * 17 15 14 35 35 H 1.09000 * 110.56173 * 201.94232 * 18 17 15 36 36 H 1.08998 * 110.68812 * 79.15350 * 18 17 15 37 37 H 1.08996 * 110.05754 * 267.35798 * 19 18 17 38 38 H 1.08998 * 110.09921 * 145.87754 * 19 18 17 39 39 H 1.08998 * 115.55405 * 283.41638 * 23 10 9 40 40 H 1.09006 * 117.49700 * 0.02562 * 24 23 10 41 41 H 1.09002 * 117.49964 * 145.02220 * 24 23 10 42 42 H 1.08997 * 117.50285 * 252.51594 * 25 24 23 43 43 H 1.09007 * 117.49871 * 107.48875 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.1994 -3.6122 -0.1405 11 6 1.6031 -4.8731 0.3207 12 6 2.6856 -5.9516 0.3957 13 1 3.2213 -6.0180 -0.5512 14 6 2.0590 -7.3216 0.7591 15 6 3.2806 -8.0582 1.3680 16 1 3.0160 -8.8538 2.0645 17 6 4.1852 -8.5377 0.2078 18 6 5.6075 -8.4144 0.8101 19 6 5.5513 -7.1020 1.6206 20 6 4.0803 -6.9019 2.0246 21 1 3.9705 -6.9213 3.1089 22 8 3.6030 -5.6634 1.4873 23 6 2.6725 -3.7296 -1.5263 24 6 4.1620 -4.0041 -1.7433 25 6 3.5852 -2.6223 -2.0573 26 1 -0.4850 0.8400 0.0004 27 1 0.5487 -2.5133 -0.8341 28 1 0.7044 -2.6032 0.9367 29 1 0.8272 -5.1852 -0.3783 30 1 1.1655 -4.7281 1.3084 31 1 1.6954 -7.8349 -0.1311 32 1 1.2637 -7.2062 1.4955 33 1 4.0759 -7.8886 -0.6610 34 1 3.9641 -9.5731 -0.0518 35 1 6.3536 -8.3438 0.0186 36 1 5.8234 -9.2593 1.4640 37 1 5.8867 -6.2676 1.0048 38 1 6.1754 -7.1843 2.5104 39 1 1.9699 -4.1816 -2.2263 40 1 4.7907 -4.0980 -0.8578 41 1 4.4396 -4.6371 -2.5862 42 1 3.4831 -2.3461 -3.1067 43 1 3.8345 -1.8067 -1.3784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720867720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:18 Heat of formation + Delta-G solvation = -20.713629 kcal Electronic energy + Delta-G solvation = -21238.410734 eV Core-core repulsion = 18283.953417 eV Total energy + Delta-G solvation = -2954.457317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18647 -37.57789 -35.03281 -33.52120 -32.58471 -31.61597 -28.73360 -27.58153 -26.28000 -23.70707 -22.19810 -21.55605 -21.09495 -20.48415 -20.00553 -19.18559 -16.74365 -16.14940 -15.74663 -14.94099 -14.89223 -14.58907 -14.21659 -14.17983 -13.74169 -13.48475 -13.12064 -12.37636 -12.22059 -11.99506 -11.80963 -11.45108 -11.24491 -11.14180 -10.99837 -10.93500 -10.79822 -10.76382 -10.64882 -10.58841 -10.51035 -10.37633 -9.81116 -9.52008 -9.20551 -9.06530 -8.94722 -8.32922 -7.15941 -5.94168 -3.93094 3.35776 3.43198 3.48282 3.97271 4.41045 4.46885 4.52672 4.65168 4.80332 4.86464 5.12441 5.20176 5.22436 5.32987 5.40982 5.46014 5.51923 5.55973 5.63097 5.72990 5.79658 5.81352 5.83064 5.88828 5.94632 6.00355 6.04784 6.12367 6.24072 6.26595 6.28819 6.37383 6.45731 6.57106 6.81396 7.11370 7.27474 7.42723 7.44716 7.94474 8.20537 8.30666 8.64025 9.13785 9.69214 11.16671 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.004877 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.525246 B = 5739.647200 C = 5897.469400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.492 4.492 8 H 0.068 0.932 9 C 0.195 3.805 10 N -0.501 5.501 11 C 0.062 3.938 12 C 0.089 3.911 13 H 0.074 0.926 14 C -0.149 4.149 15 C -0.122 4.122 16 H 0.094 0.906 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.141 4.141 20 C 0.073 3.927 21 H 0.081 0.919 22 O -0.348 6.348 23 C 0.024 3.976 24 C -0.185 4.185 25 C -0.155 4.155 26 H 0.259 0.741 27 H -0.004 1.004 28 H 0.024 0.976 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 -17.549 -0.063 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.530 4.530 8 H 0.086 0.914 9 C 0.070 3.930 10 N -0.226 5.226 11 C -0.067 4.067 12 C 0.032 3.968 13 H 0.092 0.908 14 C -0.187 4.187 15 C -0.141 4.141 16 H 0.112 0.888 17 C -0.158 4.158 18 C -0.161 4.161 19 C -0.179 4.179 20 C 0.014 3.986 21 H 0.099 0.901 22 O -0.267 6.267 23 C -0.086 4.086 24 C -0.223 4.223 25 C -0.192 4.192 26 H 0.068 0.932 27 H 0.014 0.986 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.708 -17.085 0.312 18.746 hybrid contribution -0.470 0.540 -0.568 0.914 sum 7.238 -16.545 -0.256 18.061 Atomic orbital electron populations 1.69967 1.06025 1.26414 1.51897 1.24978 0.94815 0.99151 0.95868 0.86510 0.80191 0.83773 0.77384 1.19624 1.21245 1.21165 1.21271 0.93574 0.89621 1.48582 0.91386 1.19721 0.89804 0.87550 0.95888 1.61870 1.40559 1.03001 1.17139 1.22127 0.93599 0.90529 1.00453 1.23354 0.90172 0.92367 0.90931 0.90796 1.23279 0.97789 0.96260 1.01353 1.23408 0.95319 0.97864 0.97462 0.88771 1.22614 0.94585 1.00949 0.97695 1.22387 0.96973 0.97533 0.99174 1.22666 0.96830 0.98134 1.00283 1.23189 0.92855 0.84805 0.97767 0.90130 1.89069 1.62476 1.25781 1.49344 1.22067 0.91420 1.04086 0.90981 1.23033 0.96944 1.00244 1.02047 1.23102 1.02464 0.93021 1.00646 0.93180 0.98562 0.95822 0.94918 0.90651 0.90315 0.90547 0.90904 0.91647 0.91696 0.91822 0.90376 0.91689 0.91707 0.88686 0.90601 0.90351 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.49 -13.88 7.81 -34.44 -0.27 -14.15 16 8 H 0.07 1.92 5.77 -52.49 -0.30 1.62 16 9 C 0.19 5.17 4.77 -4.98 -0.02 5.14 16 10 N -0.50 -11.13 4.57 -228.08 -1.04 -12.18 16 11 C 0.06 1.15 4.66 -3.82 -0.02 1.13 16 12 C 0.09 1.39 2.94 -25.69 -0.08 1.31 16 13 H 0.07 1.17 5.30 -51.93 -0.28 0.89 16 14 C -0.15 -1.79 5.91 -24.58 -0.15 -1.94 16 15 C -0.12 -1.31 4.13 -87.45 -0.36 -1.67 16 16 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.12 -1.19 6.10 -24.79 -0.15 -1.34 16 18 C -0.12 -1.17 6.84 -25.00 -0.17 -1.34 16 19 C -0.14 -1.63 6.58 -25.58 -0.17 -1.80 16 20 C 0.07 0.94 4.30 -25.14 -0.11 0.84 16 21 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 22 O -0.35 -6.00 10.70 -35.23 -0.38 -6.38 16 23 C 0.02 0.48 4.20 -67.71 -0.28 0.19 16 24 C -0.18 -3.21 9.13 -26.73 -0.24 -3.45 16 25 C -0.16 -3.08 9.47 -26.73 -0.25 -3.33 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.00 -0.10 7.99 -51.93 -0.42 -0.52 16 28 H 0.02 0.67 7.73 -51.93 -0.40 0.27 16 29 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.08 1.46 7.83 -51.93 -0.41 1.06 16 31 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 32 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.07 0.79 6.69 -51.93 -0.35 0.45 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.12 2.65 5.42 -51.93 -0.28 2.37 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -30.45 330.34 -10.56 -41.01 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.46 Total: 1.03 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.37 Total: -19.01 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.31 Total: -38.58 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.38 Total: -6.38 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.45 -10.56 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720867720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.293 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds