Wall clock time and date at job start Mon Mar 30 2020 07:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00151 * 2 1 4 4 H 1.48499 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47169 * 300.00366 * 3 2 1 6 6 H 1.48504 * 109.47068 * 60.00408 * 3 2 1 7 7 C 1.37883 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99798 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00160 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47053 * 174.22457 * 9 7 2 11 11 C 1.46902 * 110.99834 * 159.94251 * 10 9 7 12 12 C 1.52999 * 109.46949 * 189.99808 * 11 10 9 13 13 H 1.08994 * 110.36663 * 307.32730 * 12 11 10 14 14 C 1.54965 * 110.40365 * 184.99639 * 12 11 10 15 15 C 1.55102 * 101.15339 * 203.40823 * 14 12 11 16 16 H 1.09001 * 113.97425 * 155.33168 * 15 14 12 17 17 C 1.54740 * 108.25281 * 282.32050 * 15 14 12 18 18 C 1.54946 * 102.73893 * 146.08246 * 17 15 14 19 19 C 1.54353 * 103.78857 * 320.51436 * 18 17 15 20 20 C 1.53855 * 106.46106 * 26.60917 * 19 18 17 21 21 H 1.08999 * 110.80506 * 117.23282 * 20 19 18 22 22 O 1.43186 * 109.42930 * 239.70496 * 20 19 18 23 23 C 1.46902 * 111.00249 * 283.89066 * 10 9 7 24 24 C 1.53005 * 117.49751 * 137.70187 * 23 10 9 25 25 C 1.52993 * 60.00285 * 252.51535 * 24 23 10 26 26 H 0.96997 * 120.00244 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47143 * 54.22913 * 9 7 2 28 28 H 1.08993 * 109.47126 * 294.23001 * 9 7 2 29 29 H 1.09001 * 109.47380 * 70.00037 * 11 10 9 30 30 H 1.09001 * 109.47115 * 309.99765 * 11 10 9 31 31 H 1.09002 * 111.08568 * 85.43710 * 14 12 11 32 32 H 1.09003 * 111.08782 * 321.37559 * 14 12 11 33 33 H 1.08996 * 110.75794 * 27.76300 * 17 15 14 34 34 H 1.09006 * 110.75080 * 264.39186 * 17 15 14 35 35 H 1.09000 * 110.56173 * 201.94232 * 18 17 15 36 36 H 1.08998 * 110.68812 * 79.15350 * 18 17 15 37 37 H 1.08996 * 110.05754 * 267.35798 * 19 18 17 38 38 H 1.08998 * 110.09921 * 145.87754 * 19 18 17 39 39 H 1.08998 * 115.55405 * 283.41638 * 23 10 9 40 40 H 1.09006 * 117.49700 * 0.02562 * 24 23 10 41 41 H 1.09002 * 117.49964 * 145.02220 * 24 23 10 42 42 H 1.08997 * 117.50285 * 252.51594 * 25 24 23 43 43 H 1.09007 * 117.49871 * 107.48875 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.1994 -3.6122 -0.1405 11 6 1.6031 -4.8731 0.3207 12 6 2.6856 -5.9516 0.3957 13 1 3.2213 -6.0180 -0.5512 14 6 2.0590 -7.3216 0.7591 15 6 3.2806 -8.0582 1.3680 16 1 3.0160 -8.8538 2.0645 17 6 4.1852 -8.5377 0.2078 18 6 5.6075 -8.4144 0.8101 19 6 5.5513 -7.1020 1.6206 20 6 4.0803 -6.9019 2.0246 21 1 3.9705 -6.9213 3.1089 22 8 3.6030 -5.6634 1.4873 23 6 2.6725 -3.7296 -1.5263 24 6 4.1620 -4.0041 -1.7433 25 6 3.5852 -2.6223 -2.0573 26 1 -0.4850 0.8400 0.0004 27 1 0.5487 -2.5133 -0.8341 28 1 0.7044 -2.6032 0.9367 29 1 0.8272 -5.1852 -0.3783 30 1 1.1655 -4.7281 1.3084 31 1 1.6954 -7.8349 -0.1311 32 1 1.2637 -7.2062 1.4955 33 1 4.0759 -7.8886 -0.6610 34 1 3.9641 -9.5731 -0.0518 35 1 6.3536 -8.3438 0.0186 36 1 5.8234 -9.2593 1.4640 37 1 5.8867 -6.2676 1.0048 38 1 6.1754 -7.1843 2.5104 39 1 1.9699 -4.1816 -2.2263 40 1 4.7907 -4.0980 -0.8578 41 1 4.4396 -4.6371 -2.5862 42 1 3.4831 -2.3461 -3.1067 43 1 3.8345 -1.8067 -1.3784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720867720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:17 Heat of formation + Delta-G solvation = -39.249348 kcal Electronic energy + Delta-G solvation = -21239.214503 eV Core-core repulsion = 18283.953417 eV Total energy + Delta-G solvation = -2955.261086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23893 -39.18189 -36.11014 -35.30204 -34.40411 -32.88684 -30.24460 -28.55567 -27.94421 -25.07506 -24.12758 -23.06837 -22.25503 -21.44442 -21.22185 -20.59125 -18.63018 -17.41888 -17.01504 -16.59015 -16.48237 -15.81966 -15.74906 -15.35472 -14.88838 -14.67273 -14.58364 -14.22344 -13.79440 -13.42322 -13.14523 -13.02354 -12.78803 -12.63697 -12.49128 -12.35859 -12.15911 -11.94500 -11.83443 -11.66783 -11.57732 -11.45849 -11.35517 -11.19022 -11.04615 -10.69588 -10.54093 -10.29377 -8.95375 -8.15553 -6.22876 1.39774 1.40664 1.54108 2.41681 2.88789 3.04864 3.16237 3.29458 3.47352 3.68750 3.85595 4.09781 4.15806 4.18698 4.25568 4.32287 4.39706 4.42183 4.56957 4.59591 4.64226 4.68089 4.75408 4.77255 4.82616 4.87767 4.92225 4.99669 5.10035 5.11586 5.19331 5.21493 5.23589 5.28705 5.36891 5.45308 5.49820 5.52476 5.77624 6.11296 6.28991 6.45550 6.69260 6.92147 7.44626 8.95348 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.004877 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.525246 B = 5739.647200 C = 5897.469400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.502 4.502 8 H 0.065 0.935 9 C 0.211 3.789 10 N -0.512 5.512 11 C 0.059 3.941 12 C 0.095 3.905 13 H 0.075 0.925 14 C -0.143 4.143 15 C -0.111 4.111 16 H 0.118 0.882 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.141 4.141 20 C 0.058 3.942 21 H 0.081 0.919 22 O -0.386 6.386 23 C 0.004 3.996 24 C -0.144 4.144 25 C -0.171 4.171 26 H 0.262 0.738 27 H -0.033 1.033 28 H -0.006 1.006 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 -19.476 -0.777 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.085 3.915 10 N -0.236 5.236 11 C -0.069 4.069 12 C 0.038 3.962 13 H 0.093 0.907 14 C -0.181 4.181 15 C -0.129 4.129 16 H 0.136 0.864 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.179 4.179 20 C 0.000 4.000 21 H 0.099 0.901 22 O -0.306 6.306 23 C -0.105 4.105 24 C -0.181 4.181 25 C -0.208 4.208 26 H 0.071 0.929 27 H -0.015 1.015 28 H 0.012 0.988 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.115 0.885 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.310 -19.038 -0.401 21.197 hybrid contribution -0.966 1.116 -0.306 1.507 sum 8.344 -17.922 -0.707 19.782 Atomic orbital electron populations 1.70092 1.07645 1.27509 1.52778 1.25847 0.95651 1.02874 0.95338 0.85427 0.79060 0.79108 0.77621 1.18845 1.20349 1.20687 1.21516 0.93523 0.90620 1.48334 0.91685 1.19355 0.89755 0.89293 0.93081 1.61792 1.39404 1.03367 1.19082 1.22214 0.95172 0.90124 0.99368 1.23246 0.89246 0.92792 0.90890 0.90685 1.23260 0.98221 0.94308 1.02314 1.23438 0.94174 0.97334 0.97987 0.86380 1.22622 0.94327 1.01985 0.96715 1.22377 0.97062 0.96695 0.99278 1.22636 0.95857 0.98671 1.00693 1.23474 0.94128 0.84390 0.97968 0.90089 1.89025 1.63009 1.28641 1.49925 1.22196 0.93160 1.05301 0.89878 1.22991 0.94123 0.98494 1.02525 1.23055 1.03590 0.93166 1.00963 0.92935 1.01483 0.98826 0.94082 0.92539 0.88266 0.90741 0.92073 0.89319 0.91115 0.89946 0.92677 0.90771 0.90849 0.89796 0.86731 0.88487 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.01 13.29 21.45 0.28 -57.73 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 4 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.50 -29.28 7.81 25.60 0.20 -29.08 16 8 H 0.07 3.78 5.77 -2.91 -0.02 3.76 16 9 C 0.21 11.78 4.77 85.56 0.41 12.19 16 10 N -0.51 -23.52 4.57 -875.52 -4.00 -27.52 16 11 C 0.06 2.28 4.66 86.30 0.40 2.69 16 12 C 0.10 2.93 2.94 31.27 0.09 3.02 16 13 H 0.08 2.27 5.30 -2.39 -0.01 2.26 16 14 C -0.14 -3.18 5.91 31.99 0.19 -2.99 16 15 C -0.11 -2.08 4.13 -8.74 -0.04 -2.11 16 16 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 17 C -0.12 -1.93 6.10 31.85 0.19 -1.73 16 18 C -0.12 -1.85 6.84 31.72 0.22 -1.63 16 19 C -0.14 -3.05 6.58 31.34 0.21 -2.84 16 20 C 0.06 1.45 4.30 31.63 0.14 1.59 16 21 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 22 O -0.39 -13.41 10.70 -148.98 -1.59 -15.00 16 23 C 0.00 0.14 4.20 44.92 0.19 0.33 16 24 C -0.14 -4.76 9.13 30.59 0.28 -4.48 16 25 C -0.17 -6.71 9.47 30.59 0.29 -6.42 16 26 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 27 H -0.03 -1.97 7.99 -2.38 -0.02 -1.99 16 28 H -0.01 -0.38 7.73 -2.39 -0.02 -0.40 16 29 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 30 H 0.06 2.33 7.83 -2.39 -0.02 2.31 16 31 H 0.10 1.81 8.04 -2.39 -0.02 1.79 16 32 H 0.07 1.68 8.07 -2.39 -0.02 1.67 16 33 H 0.06 1.15 6.69 -2.39 -0.02 1.13 16 34 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.44 7.93 -2.39 -0.02 1.42 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 41 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.09 3.97 5.42 -2.38 -0.01 3.95 16 Total: -1.00 -68.29 330.34 0.91 -67.38 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.96 Total: 16.08 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 3.23 Total: -31.01 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -3.72 Total: -85.25 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -1.59 Total: -15.00 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -68.29 0.91 -67.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720867720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.127 kcal (2) G-P(sol) polarization free energy of solvation -68.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds