Wall clock time and date at job start Mon Mar 30 2020 07:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99534 * 2 1 4 4 H 1.48502 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47413 * 300.00222 * 3 2 1 6 6 H 1.48500 * 109.47195 * 60.00281 * 3 2 1 7 7 C 1.37869 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00239 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47026 * 185.25917 * 9 7 2 11 11 C 1.46905 * 111.00097 * 196.26020 * 10 9 7 12 12 C 1.52995 * 109.47225 * 162.85599 * 11 10 9 13 13 H 1.09005 * 110.54875 * 305.82695 * 12 11 10 14 14 C 1.54991 * 110.61538 * 182.77889 * 12 11 10 15 15 C 1.54612 * 102.07594 * 204.10376 * 14 12 11 16 16 H 1.09006 * 112.72265 * 259.92318 * 15 14 12 17 17 C 1.54049 * 109.09765 * 134.97503 * 15 14 12 18 18 C 1.54895 * 104.09216 * 222.97930 * 17 15 14 19 19 C 1.54810 * 102.73423 * 38.66916 * 18 17 15 20 20 C 1.54306 * 104.51871 * 322.39095 * 19 18 17 21 21 H 1.08994 * 111.36134 * 260.07038 * 20 19 18 22 22 O 1.43822 * 108.55931 * 137.13495 * 20 19 18 23 23 C 1.46907 * 111.00041 * 72.30941 * 10 9 7 24 24 C 1.52994 * 117.49732 * 276.29902 * 23 10 9 25 25 C 1.52994 * 60.00233 * 252.51075 * 24 23 10 26 26 H 0.97000 * 120.00238 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47139 * 65.25908 * 9 7 2 28 28 H 1.09000 * 109.46891 * 305.26022 * 9 7 2 29 29 H 1.09007 * 109.46897 * 282.85816 * 11 10 9 30 30 H 1.09001 * 109.46781 * 42.84672 * 11 10 9 31 31 H 1.08998 * 110.91570 * 322.30064 * 14 12 11 32 32 H 1.09006 * 110.91300 * 85.91351 * 14 12 11 33 33 H 1.09001 * 110.50794 * 104.32556 * 17 15 14 34 34 H 1.09006 * 110.50696 * 341.63322 * 17 15 14 35 35 H 1.08998 * 110.76098 * 280.36334 * 18 17 15 36 36 H 1.08993 * 110.76365 * 156.98062 * 18 17 15 37 37 H 1.09002 * 110.42557 * 203.62997 * 19 18 17 38 38 H 1.09001 * 110.42022 * 81.15546 * 19 18 17 39 39 H 1.08997 * 115.54801 * 62.00992 * 23 10 9 40 40 H 1.08998 * 117.50053 * 0.02562 * 24 23 10 41 41 H 1.09002 * 117.50024 * 145.01621 * 24 23 10 42 42 H 1.09004 * 117.50258 * 252.51473 * 25 24 23 43 43 H 1.08996 * 117.52173 * 107.48086 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2008 -3.6127 0.1258 11 6 1.5725 -4.8859 -0.2514 12 6 2.6578 -5.9297 -0.5224 13 1 3.3691 -5.5593 -1.2606 14 6 2.0257 -7.2652 -0.9905 15 6 3.1162 -8.2915 -0.6058 16 1 3.7333 -8.5881 -1.4540 17 6 2.4504 -9.5041 0.0722 18 6 3.3766 -9.8205 1.2727 19 6 3.7770 -8.4121 1.7754 20 6 3.9417 -7.5748 0.4897 21 1 4.9909 -7.4779 0.2108 22 8 3.3349 -6.2881 0.7005 23 6 2.7542 -3.6810 1.4849 24 6 3.9463 -2.7783 1.8085 25 6 4.1497 -4.2863 1.6499 26 1 -0.4850 0.8400 0.0004 27 1 0.6967 -2.5986 -0.9336 28 1 0.5561 -2.5174 0.8389 29 1 0.9323 -5.2298 0.5611 30 1 0.9731 -4.7429 -1.1505 31 1 1.0974 -7.4650 -0.4554 32 1 1.8589 -7.2602 -2.0677 33 1 2.4110 -10.3507 -0.6132 34 1 1.4500 -9.2458 0.4194 35 1 4.2546 -10.3783 0.9469 36 1 2.8352 -10.3668 2.0449 37 1 4.7182 -8.4570 2.3233 38 1 2.9899 -7.9944 2.4032 39 1 2.0298 -3.8626 2.2788 40 1 4.3197 -2.1333 1.0131 41 1 4.0063 -2.3654 2.8155 42 1 4.3435 -4.8658 2.5525 43 1 4.6570 -4.6342 0.7501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720867722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:22 Heat of formation + Delta-G solvation = -18.621103 kcal Electronic energy + Delta-G solvation = -21251.784798 eV Core-core repulsion = 18297.418220 eV Total energy + Delta-G solvation = -2954.366578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13528 -37.46420 -35.27709 -33.64427 -32.52242 -31.51167 -28.69004 -27.56280 -26.27512 -23.75635 -22.11007 -21.49804 -21.27938 -20.27783 -19.71040 -19.24987 -16.80744 -16.43536 -15.78086 -15.01425 -14.77148 -14.59542 -14.35151 -14.15377 -13.55117 -13.36533 -13.22137 -12.34180 -12.23730 -11.95103 -11.72675 -11.35561 -11.30039 -11.11112 -11.00506 -10.93625 -10.85115 -10.64393 -10.63453 -10.60911 -10.51797 -10.37018 -9.78836 -9.44262 -9.12652 -8.98791 -8.84353 -8.33324 -7.19706 -5.94020 -3.93303 3.35817 3.43065 3.48319 3.94962 4.41879 4.45051 4.51238 4.78204 4.82906 4.98393 5.09828 5.20159 5.25826 5.33669 5.41522 5.42199 5.50704 5.59032 5.66018 5.76337 5.79426 5.83975 5.93156 5.94356 5.98988 6.05419 6.08025 6.18426 6.19545 6.30008 6.42466 6.48376 6.56083 6.62540 6.93367 7.14451 7.29271 7.33993 7.48051 7.94210 8.19259 8.33723 8.65012 9.15300 9.70014 11.17081 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.004623 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.466748 B = 6055.362512 C = 6480.400629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.493 4.493 8 H 0.068 0.932 9 C 0.194 3.806 10 N -0.511 5.511 11 C 0.065 3.935 12 C 0.086 3.914 13 H 0.072 0.928 14 C -0.145 4.145 15 C -0.123 4.123 16 H 0.084 0.916 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.124 4.124 20 C 0.068 3.932 21 H 0.070 0.930 22 O -0.344 6.344 23 C 0.039 3.961 24 C -0.168 4.168 25 C -0.140 4.140 26 H 0.258 0.742 27 H 0.024 0.976 28 H -0.005 1.005 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -18.652 0.685 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.148 4.148 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.532 4.532 8 H 0.086 0.914 9 C 0.069 3.931 10 N -0.235 5.235 11 C -0.064 4.064 12 C 0.028 3.972 13 H 0.090 0.910 14 C -0.183 4.183 15 C -0.141 4.141 16 H 0.103 0.897 17 C -0.154 4.154 18 C -0.162 4.162 19 C -0.162 4.162 20 C 0.010 3.990 21 H 0.088 0.912 22 O -0.264 6.264 23 C -0.070 4.070 24 C -0.206 4.206 25 C -0.178 4.178 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.013 0.987 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.560 -18.296 0.553 19.444 hybrid contribution -0.437 0.710 0.340 0.901 sum 6.123 -17.585 0.894 18.642 Atomic orbital electron populations 1.69974 1.06031 1.26402 1.52000 1.24984 0.94811 0.99191 0.95863 0.86494 0.80171 0.83728 0.77351 1.19650 1.21214 1.21250 1.21280 0.93763 0.89609 1.48543 0.91423 1.19727 0.89863 0.87634 0.95826 1.61889 1.37040 1.02396 1.22178 1.22025 0.93861 0.90376 1.00095 1.23196 0.93810 0.93211 0.86953 0.91027 1.23268 0.98432 0.94920 1.01688 1.23028 0.96857 0.95974 0.98274 0.89735 1.22436 0.99004 0.97050 0.96862 1.22510 0.99196 0.96842 0.97660 1.22528 1.02021 0.94378 0.97234 1.23398 0.96441 0.84816 0.94356 0.91182 1.89237 1.70086 1.32707 1.34329 1.21883 0.90070 1.04590 0.90431 1.23007 1.02822 0.93433 1.01295 1.22716 0.99575 0.94022 1.01480 0.93198 0.95830 0.98732 0.95194 0.90375 0.90547 0.90704 0.91872 0.91190 0.91632 0.91555 0.91607 0.90426 0.92026 0.88245 0.90548 0.90775 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.49 -13.98 8.38 -34.44 -0.29 -14.27 16 8 H 0.07 1.90 5.74 -52.48 -0.30 1.60 16 9 C 0.19 5.15 4.74 -4.98 -0.02 5.13 16 10 N -0.51 -11.30 4.52 -228.08 -1.03 -12.33 16 11 C 0.07 1.20 4.86 -3.82 -0.02 1.18 16 12 C 0.09 1.31 3.19 -25.68 -0.08 1.22 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 14 C -0.14 -1.72 6.12 -24.83 -0.15 -1.88 16 15 C -0.12 -1.28 3.88 -88.30 -0.34 -1.63 16 16 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.12 -1.06 6.37 -25.18 -0.16 -1.22 16 18 C -0.12 -1.08 6.90 -24.78 -0.17 -1.25 16 19 C -0.12 -1.31 6.53 -25.09 -0.16 -1.48 16 20 C 0.07 0.81 4.33 -25.12 -0.11 0.70 16 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 22 O -0.34 -5.21 5.84 -35.23 -0.21 -5.41 16 23 C 0.04 0.83 4.26 -67.71 -0.29 0.54 16 24 C -0.17 -3.38 9.43 -26.74 -0.25 -3.63 16 25 C -0.14 -2.51 7.33 -26.73 -0.20 -2.70 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.66 7.70 -51.93 -0.40 0.26 16 28 H -0.01 -0.15 8.05 -51.93 -0.42 -0.57 16 29 H 0.03 0.56 8.04 -51.92 -0.42 0.14 16 30 H 0.08 1.40 7.70 -51.93 -0.40 1.00 16 31 H 0.08 0.92 7.14 -51.93 -0.37 0.55 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.68 7.22 -51.93 -0.37 0.31 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.93 8.00 -51.93 -0.42 0.52 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.10 2.18 6.44 -51.93 -0.33 1.84 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.68 6.93 -51.93 -0.36 1.32 16 LS Contribution 327.13 15.07 4.93 4.93 Total: -1.00 -29.98 327.13 -10.51 -40.50 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.58 Total: -0.27 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.35 Total: -17.90 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.29 Total: -38.88 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.21 Total: -5.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.98 -10.51 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720867722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.875 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds