Wall clock time and date at job start Mon Mar 30 2020 07:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99534 * 2 1 4 4 H 1.48502 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47413 * 300.00222 * 3 2 1 6 6 H 1.48500 * 109.47195 * 60.00281 * 3 2 1 7 7 C 1.37869 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00239 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47026 * 185.25917 * 9 7 2 11 11 C 1.46905 * 111.00097 * 196.26020 * 10 9 7 12 12 C 1.52995 * 109.47225 * 162.85599 * 11 10 9 13 13 H 1.09005 * 110.54875 * 305.82695 * 12 11 10 14 14 C 1.54991 * 110.61538 * 182.77889 * 12 11 10 15 15 C 1.54612 * 102.07594 * 204.10376 * 14 12 11 16 16 H 1.09006 * 112.72265 * 259.92318 * 15 14 12 17 17 C 1.54049 * 109.09765 * 134.97503 * 15 14 12 18 18 C 1.54895 * 104.09216 * 222.97930 * 17 15 14 19 19 C 1.54810 * 102.73423 * 38.66916 * 18 17 15 20 20 C 1.54306 * 104.51871 * 322.39095 * 19 18 17 21 21 H 1.08994 * 111.36134 * 260.07038 * 20 19 18 22 22 O 1.43822 * 108.55931 * 137.13495 * 20 19 18 23 23 C 1.46907 * 111.00041 * 72.30941 * 10 9 7 24 24 C 1.52994 * 117.49732 * 276.29902 * 23 10 9 25 25 C 1.52994 * 60.00233 * 252.51075 * 24 23 10 26 26 H 0.97000 * 120.00238 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47139 * 65.25908 * 9 7 2 28 28 H 1.09000 * 109.46891 * 305.26022 * 9 7 2 29 29 H 1.09007 * 109.46897 * 282.85816 * 11 10 9 30 30 H 1.09001 * 109.46781 * 42.84672 * 11 10 9 31 31 H 1.08998 * 110.91570 * 322.30064 * 14 12 11 32 32 H 1.09006 * 110.91300 * 85.91351 * 14 12 11 33 33 H 1.09001 * 110.50794 * 104.32556 * 17 15 14 34 34 H 1.09006 * 110.50696 * 341.63322 * 17 15 14 35 35 H 1.08998 * 110.76098 * 280.36334 * 18 17 15 36 36 H 1.08993 * 110.76365 * 156.98062 * 18 17 15 37 37 H 1.09002 * 110.42557 * 203.62997 * 19 18 17 38 38 H 1.09001 * 110.42022 * 81.15546 * 19 18 17 39 39 H 1.08997 * 115.54801 * 62.00992 * 23 10 9 40 40 H 1.08998 * 117.50053 * 0.02562 * 24 23 10 41 41 H 1.09002 * 117.50024 * 145.01621 * 24 23 10 42 42 H 1.09004 * 117.50258 * 252.51473 * 25 24 23 43 43 H 1.08996 * 117.52173 * 107.48086 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2008 -3.6127 0.1258 11 6 1.5725 -4.8859 -0.2514 12 6 2.6578 -5.9297 -0.5224 13 1 3.3691 -5.5593 -1.2606 14 6 2.0257 -7.2652 -0.9905 15 6 3.1162 -8.2915 -0.6058 16 1 3.7333 -8.5881 -1.4540 17 6 2.4504 -9.5041 0.0722 18 6 3.3766 -9.8205 1.2727 19 6 3.7770 -8.4121 1.7754 20 6 3.9417 -7.5748 0.4897 21 1 4.9909 -7.4779 0.2108 22 8 3.3349 -6.2881 0.7005 23 6 2.7542 -3.6810 1.4849 24 6 3.9463 -2.7783 1.8085 25 6 4.1497 -4.2863 1.6499 26 1 -0.4850 0.8400 0.0004 27 1 0.6967 -2.5986 -0.9336 28 1 0.5561 -2.5174 0.8389 29 1 0.9323 -5.2298 0.5611 30 1 0.9731 -4.7429 -1.1505 31 1 1.0974 -7.4650 -0.4554 32 1 1.8589 -7.2602 -2.0677 33 1 2.4110 -10.3507 -0.6132 34 1 1.4500 -9.2458 0.4194 35 1 4.2546 -10.3783 0.9469 36 1 2.8352 -10.3668 2.0449 37 1 4.7182 -8.4570 2.3233 38 1 2.9899 -7.9944 2.4032 39 1 2.0298 -3.8626 2.2788 40 1 4.3197 -2.1333 1.0131 41 1 4.0063 -2.3654 2.8155 42 1 4.3435 -4.8658 2.5525 43 1 4.6570 -4.6342 0.7501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720867722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:22 Heat of formation + Delta-G solvation = -35.705935 kcal Electronic energy + Delta-G solvation = -21252.525652 eV Core-core repulsion = 18297.418220 eV Total energy + Delta-G solvation = -2955.107432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16198 -39.05626 -36.30147 -35.43066 -34.39826 -32.74072 -30.19538 -28.41215 -27.97979 -25.12184 -24.09093 -22.96928 -22.40263 -21.39337 -20.93770 -20.52566 -18.53107 -17.75365 -16.99049 -16.66076 -16.32297 -16.03753 -15.72364 -15.48719 -15.00500 -14.63061 -14.37502 -14.03247 -13.66603 -13.28112 -13.13434 -13.02439 -12.73878 -12.58720 -12.52888 -12.24415 -12.12536 -11.96531 -11.81367 -11.70169 -11.61497 -11.50593 -11.33567 -11.16341 -10.93939 -10.56345 -10.49123 -10.21529 -9.04906 -8.15943 -6.23768 1.40908 1.41132 1.55063 2.42318 2.89731 3.14157 3.16609 3.34551 3.55847 3.70152 3.96506 4.10946 4.19701 4.26283 4.28403 4.40269 4.40863 4.49976 4.54660 4.59745 4.66812 4.74202 4.81801 4.87950 4.90289 4.95381 5.02166 5.07102 5.08534 5.12307 5.20738 5.22901 5.26794 5.29059 5.37777 5.42445 5.52591 5.56163 5.76130 6.10426 6.26254 6.44739 6.67113 6.93054 7.44909 8.95540 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.004623 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.466748 B = 6055.362512 C = 6480.400629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.209 3.791 10 N -0.512 5.512 11 C 0.064 3.936 12 C 0.093 3.907 13 H 0.065 0.935 14 C -0.138 4.138 15 C -0.116 4.116 16 H 0.102 0.898 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.123 4.123 20 C 0.059 3.941 21 H 0.078 0.922 22 O -0.365 6.365 23 C 0.015 3.985 24 C -0.178 4.178 25 C -0.094 4.094 26 H 0.262 0.738 27 H 0.002 0.998 28 H -0.042 1.042 29 H 0.021 0.979 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.253 -20.144 0.538 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.543 4.543 8 H 0.086 0.914 9 C 0.083 3.917 10 N -0.236 5.236 11 C -0.064 4.064 12 C 0.035 3.965 13 H 0.083 0.917 14 C -0.176 4.176 15 C -0.135 4.135 16 H 0.120 0.880 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.161 4.161 20 C 0.002 3.998 21 H 0.096 0.904 22 O -0.285 6.285 23 C -0.094 4.094 24 C -0.215 4.215 25 C -0.131 4.131 26 H 0.070 0.930 27 H 0.020 0.980 28 H -0.024 1.024 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.498 -19.818 0.406 21.567 hybrid contribution -1.057 1.117 0.410 1.592 sum 7.441 -18.701 0.817 20.143 Atomic orbital electron populations 1.70105 1.07723 1.27526 1.52827 1.25887 0.95666 1.03037 0.95295 0.85390 0.79127 0.78916 0.77546 1.18632 1.20483 1.20712 1.21551 0.93868 0.90549 1.48378 0.91371 1.19397 0.89781 0.89395 0.93146 1.61861 1.35839 1.02796 1.23118 1.22124 0.95147 0.89692 0.99474 1.22990 0.92810 0.93700 0.87021 0.91711 1.23225 0.98632 0.93314 1.02458 1.23044 0.96203 0.95791 0.98439 0.88011 1.22433 0.98458 0.97007 0.97311 1.22499 0.99733 0.95738 0.97560 1.22518 1.01866 0.95268 0.96467 1.23652 0.96795 0.83661 0.95718 0.90424 1.89167 1.70390 1.34683 1.34279 1.21919 0.90960 1.07191 0.89351 1.23026 1.02442 0.94758 1.01286 1.22638 0.95893 0.92306 1.02286 0.92959 0.97974 1.02375 0.96083 0.90614 0.90914 0.89285 0.90056 0.92132 0.90079 0.90791 0.90710 0.92345 0.93566 0.90125 0.89358 0.88591 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 13.29 21.44 0.28 -57.90 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.51 -29.36 8.38 25.60 0.21 -29.14 16 8 H 0.07 3.89 5.74 -2.91 -0.02 3.88 16 9 C 0.21 11.62 4.74 85.56 0.41 12.03 16 10 N -0.51 -23.41 4.52 -875.52 -3.96 -27.37 16 11 C 0.06 2.42 4.86 86.30 0.42 2.84 16 12 C 0.09 2.76 3.19 31.27 0.10 2.86 16 13 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 14 C -0.14 -3.08 6.12 31.82 0.19 -2.88 16 15 C -0.12 -2.12 3.88 -9.29 -0.04 -2.15 16 16 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 17 C -0.11 -1.77 6.37 31.60 0.20 -1.57 16 18 C -0.12 -1.69 6.90 31.86 0.22 -1.47 16 19 C -0.12 -2.34 6.53 31.66 0.21 -2.14 16 20 C 0.06 1.28 4.33 31.64 0.14 1.42 16 21 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 22 O -0.37 -10.63 5.84 -148.98 -0.87 -11.50 16 23 C 0.01 0.63 4.26 44.91 0.19 0.83 16 24 C -0.18 -7.10 9.43 30.59 0.29 -6.81 16 25 C -0.09 -3.23 7.33 30.59 0.22 -3.01 16 26 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.00 0.13 7.70 -2.39 -0.02 0.11 16 28 H -0.04 -2.56 8.05 -2.39 -0.02 -2.58 16 29 H 0.02 0.82 8.04 -2.38 -0.02 0.80 16 30 H 0.08 2.84 7.70 -2.39 -0.02 2.82 16 31 H 0.07 1.68 7.14 -2.39 -0.02 1.67 16 32 H 0.09 1.73 8.14 -2.38 -0.02 1.72 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.06 7.22 -2.38 -0.02 1.04 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.34 8.00 -2.39 -0.02 1.32 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.08 3.54 6.44 -2.39 -0.02 3.52 16 41 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.10 3.28 6.93 -2.39 -0.02 3.26 16 Total: -1.00 -65.85 327.13 1.67 -64.18 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.96 Total: 13.84 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 3.23 Total: -28.86 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -3.67 Total: -85.27 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.87 Total: -11.50 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -65.85 1.67 -64.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720867722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.475 kcal (2) G-P(sol) polarization free energy of solvation -65.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds