Wall clock time and date at job start Mon Mar 30 2020 07:43:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86803 * 120.00273 * 2 1
4 4 H 1.48501 * 109.47083 * 89.99793 * 3 2 1
5 5 H 1.48501 * 109.47406 * 210.00370 * 3 2 1
6 6 H 1.48507 * 109.46488 * 330.00317 * 3 2 1
7 7 C 1.37881 * 120.00208 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99939 * 179.97438 * 7 2 1
9 9 C 1.50707 * 119.99948 * 0.02562 * 7 2 1
10 10 N 1.46893 * 109.47343 * 174.76696 * 9 7 2
11 11 C 1.46899 * 111.00173 * 162.27706 * 10 9 7
12 12 C 1.52994 * 109.47091 * 190.00343 * 11 10 9
13 13 H 1.09005 * 110.01656 * 306.38691 * 12 11 10
14 14 C 1.55910 * 110.03122 * 185.00173 * 12 11 10
15 15 C 1.51587 * 102.19470 * 245.80184 * 14 12 11
16 16 H 1.09001 * 110.62953 * 84.62763 * 15 14 12
17 17 C 1.51086 * 122.75974 * 218.98535 * 15 14 12
18 18 C 1.55708 * 104.51427 * 142.66714 * 17 15 14
19 19 C 1.56252 * 105.89409 * 352.88952 * 18 17 15
20 20 C 1.50713 * 101.85799 * 335.46299 * 19 18 17
21 21 H 1.08995 * 108.84587 * 291.98450 * 20 19 18
22 22 O 1.39672 * 127.82478 * 158.72108 * 20 19 18
23 23 C 1.46901 * 110.99997 * 286.23282 * 10 9 7
24 24 C 1.53004 * 117.49911 * 141.69588 * 23 10 9
25 25 C 1.53001 * 59.99964 * 252.51015 * 24 23 10
26 26 H 0.96996 * 119.99973 * 0.02562 * 1 2 3
27 27 H 1.09006 * 109.46500 * 294.77025 * 9 7 2
28 28 H 1.09005 * 109.47080 * 54.76287 * 9 7 2
29 29 H 1.08996 * 109.46860 * 309.99821 * 11 10 9
30 30 H 1.08999 * 109.46881 * 69.99987 * 11 10 9
31 31 H 1.08994 * 110.85963 * 3.97831 * 14 12 11
32 32 H 1.09003 * 110.85955 * 127.42627 * 14 12 11
33 33 H 1.08996 * 110.42706 * 261.42872 * 17 15 14
34 34 H 1.09003 * 110.41993 * 23.91479 * 17 15 14
35 35 H 1.08995 * 110.16695 * 233.77918 * 18 17 15
36 36 H 1.09000 * 110.16216 * 111.99053 * 18 17 15
37 37 H 1.08994 * 110.95263 * 217.32110 * 19 18 17
38 38 H 1.08993 * 110.95102 * 93.60128 * 19 18 17
39 39 H 1.08997 * 115.55054 * 287.40184 * 23 10 9
40 40 H 1.08999 * 117.49605 * 0.02562 * 24 23 10
41 41 H 1.09000 * 117.49877 * 145.01949 * 24 23 10
42 42 H 1.08996 * 117.49638 * 252.50815 * 25 24 23
43 43 H 1.09004 * 117.49823 * 107.49271 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0464 1.4001
5 1 3.5467 1.4402 -0.7001
6 1 1.4465 2.6526 -0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4992 -0.0017
10 7 2.2006 -3.6128 -0.1284
11 6 1.5824 -4.8810 0.2807
12 6 2.6576 -5.9654 0.3750
13 1 3.2159 -6.0195 -0.5596
14 6 1.9995 -7.3445 0.6846
15 6 2.5360 -7.6518 2.0686
16 1 1.9232 -7.1740 2.8329
17 6 2.9509 -9.0407 2.4947
18 6 4.2009 -8.8155 3.3954
19 6 4.5415 -7.2948 3.2823
20 6 3.9374 -6.9406 1.9477
21 1 4.5035 -7.4398 1.1614
22 8 3.5639 -5.6768 1.4849
23 6 2.7284 -3.7015 -1.4965
24 6 4.2042 -4.0698 -1.6618
25 6 3.7377 -2.6384 -1.9347
26 1 -0.4850 0.8400 -0.0004
27 1 0.6961 -2.5992 0.9312
28 1 0.5562 -2.5169 -0.8414
29 1 1.1063 -4.7560 1.2531
30 1 0.8340 -5.1744 -0.4554
31 1 0.9128 -7.2614 0.6993
32 1 2.3197 -8.0977 -0.0353
33 1 2.1532 -9.5183 3.0636
34 1 3.2124 -9.6432 1.6248
35 1 5.0366 -9.4156 3.0352
36 1 3.9705 -9.0731 4.4291
37 1 5.6198 -7.1362 3.2764
38 1 4.0701 -6.7290 4.0858
39 1 2.0298 -4.0719 -2.2467
40 1 4.7834 -4.2466 -0.7555
41 1 4.4768 -4.6827 -2.5210
42 1 3.7033 -2.3097 -2.9733
43 1 4.0101 -1.8731 -1.2079
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000720867726.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:43:26
Heat of formation + Delta-G solvation = -2.329871 kcal
Electronic energy + Delta-G solvation = -21019.559921 eV
Core-core repulsion = 18065.899784 eV
Total energy + Delta-G solvation = -2953.660137 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.58920 -37.66217 -35.74209 -33.59587 -32.59314 -31.57362 -28.63215 -27.76380
-26.21929 -23.74326 -22.19821 -21.60551 -21.05721 -20.52359 -20.01511 -19.38250
-16.81140 -16.33095 -15.48714 -15.28200 -14.88929 -14.54257 -14.40819 -14.33481
-13.90875 -13.38314 -12.72085 -12.42032 -12.35173 -12.13874 -11.99285 -11.64246
-11.44355 -11.26541 -11.14697 -10.96011 -10.77006 -10.67143 -10.63432 -10.55390
-10.42296 -10.07084 -9.80600 -9.48315 -9.22814 -9.04735 -8.96026 -8.32958
-7.18088 -5.94176 -3.93299 3.37267 3.42962 3.46625 3.56742 4.45133
4.53214 4.59353 4.63761 4.73045 4.82221 5.06447 5.11419 5.15042
5.29960 5.36509 5.41704 5.46193 5.59612 5.63393 5.72289 5.74083
5.79804 5.81751 5.84984 5.90608 5.98316 6.07957 6.19685 6.21912
6.24035 6.27778 6.31252 6.44762 6.54201 6.79627 7.06559 7.24458
7.35305 7.43931 7.94398 8.19320 8.29372 8.63570 9.13734 9.69285
11.16808
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.027526 B = 0.004617 C = 0.004507
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1016.976630 B = 6063.646103 C = 6211.476714
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.053 3.947
3 Si 0.894 3.106
4 H -0.281 1.281
5 H -0.273 1.273
6 H -0.289 1.289
7 C -0.494 4.494
8 H 0.069 0.931
9 C 0.196 3.804
10 N -0.502 5.502
11 C 0.062 3.938
12 C 0.086 3.914
13 H 0.077 0.923
14 C -0.138 4.138
15 C -0.149 4.149
16 H 0.085 0.915
17 C -0.108 4.108
18 C -0.119 4.119
19 C -0.104 4.104
20 C 0.059 3.941
21 H 0.046 0.954
22 O -0.330 6.330
23 C 0.024 3.976
24 C -0.188 4.188
25 C -0.151 4.151
26 H 0.259 0.741
27 H 0.025 0.975
28 H -0.005 1.005
29 H 0.075 0.925
30 H 0.035 0.965
31 H 0.077 0.923
32 H 0.071 0.929
33 H 0.065 0.935
34 H 0.065 0.935
35 H 0.066 0.934
36 H 0.069 0.931
37 H 0.071 0.929
38 H 0.076 0.924
39 H 0.066 0.934
40 H 0.096 0.904
41 H 0.077 0.923
42 H 0.079 0.921
43 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.379 -17.795 2.033 19.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.148 4.148
3 Si 0.722 3.278
4 H -0.208 1.208
5 H -0.198 1.198
6 H -0.215 1.215
7 C -0.533 4.533
8 H 0.087 0.913
9 C 0.071 3.929
10 N -0.227 5.227
11 C -0.066 4.066
12 C 0.028 3.972
13 H 0.095 0.905
14 C -0.176 4.176
15 C -0.168 4.168
16 H 0.103 0.897
17 C -0.145 4.145
18 C -0.156 4.156
19 C -0.142 4.142
20 C -0.001 4.001
21 H 0.064 0.936
22 O -0.248 6.248
23 C -0.085 4.085
24 C -0.225 4.225
25 C -0.188 4.188
26 H 0.069 0.931
27 H 0.043 0.957
28 H 0.013 0.987
29 H 0.094 0.906
30 H 0.053 0.947
31 H 0.095 0.905
32 H 0.090 0.910
33 H 0.084 0.916
34 H 0.084 0.916
35 H 0.085 0.915
36 H 0.087 0.913
37 H 0.090 0.910
38 H 0.094 0.906
39 H 0.084 0.916
40 H 0.114 0.886
41 H 0.095 0.905
42 H 0.098 0.902
43 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 6.671 -17.350 2.422 18.745
hybrid contribution -0.508 0.621 -0.675 1.049
sum 6.163 -16.729 1.747 17.913
Atomic orbital electron populations
1.69957 1.06033 1.26528 1.51824 1.24977 0.94811 0.99153 0.95832
0.86557 0.79772 0.83392 0.78054 1.20762 1.19805 1.21478 1.21265
0.93640 0.89618 1.48769 0.91345 1.19713 0.89779 0.87493 0.95896
1.61869 1.38422 1.02704 1.19683 1.22147 0.93558 0.90404 1.00522
1.23750 0.90563 0.92727 0.90141 0.90511 1.22454 1.01374 0.97320
0.96473 1.22829 0.98971 0.97247 0.97746 0.89702 1.21586 0.97494
0.96010 0.99448 1.22835 0.97537 0.95213 1.00061 1.21758 1.00735
0.95691 0.96012 1.22473 0.95307 0.85655 0.96670 0.93576 1.88707
1.63348 1.23837 1.48885 1.22064 0.90616 1.04648 0.91177 1.23066
0.97945 0.99510 1.02023 1.23036 1.02183 0.92377 1.01214 0.93124
0.95733 0.98670 0.90643 0.94707 0.90477 0.91043 0.91643 0.91638
0.91495 0.91269 0.90997 0.90574 0.91619 0.88600 0.90478 0.90239
0.86785
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16
2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16
3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16
4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
7 C -0.49 -13.99 8.03 -34.44 -0.28 -14.26 16
8 H 0.07 1.92 5.49 -52.49 -0.29 1.63 16
9 C 0.20 5.20 4.75 -4.98 -0.02 5.18 16
10 N -0.50 -11.19 4.57 -228.08 -1.04 -12.24 16
11 C 0.06 1.16 4.47 -3.83 -0.02 1.15 16
12 C 0.09 1.35 3.20 -25.18 -0.08 1.27 16
13 H 0.08 1.22 6.04 -51.93 -0.31 0.90 16
14 C -0.14 -1.71 6.41 -25.89 -0.17 -1.87 16
15 C -0.15 -1.78 3.19 -89.78 -0.29 -2.06 16
16 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16
17 C -0.11 -1.00 6.62 -26.25 -0.17 -1.17 16
18 C -0.12 -1.03 6.94 -23.54 -0.16 -1.19 16
19 C -0.10 -1.15 6.75 -26.13 -0.18 -1.33 16
20 C 0.06 0.79 3.42 -25.35 -0.09 0.70 16
21 H 0.05 0.60 7.98 -51.93 -0.41 0.19 16
22 O -0.33 -5.82 11.22 -32.03 -0.36 -6.18 16
23 C 0.02 0.49 4.28 -67.71 -0.29 0.20 16
24 C -0.19 -3.26 8.79 -26.73 -0.24 -3.49 16
25 C -0.15 -2.99 9.39 -26.73 -0.25 -3.24 16
26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
27 H 0.02 0.70 7.77 -51.93 -0.40 0.29 16
28 H 0.00 -0.13 8.03 -51.93 -0.42 -0.55 16
29 H 0.08 1.47 7.84 -51.93 -0.41 1.06 16
30 H 0.03 0.62 8.12 -51.93 -0.42 0.19 16
31 H 0.08 0.92 7.76 -51.93 -0.40 0.51 16
32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16
39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16
40 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16
41 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16
42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16
43 H 0.11 2.55 5.60 -51.93 -0.29 2.26 16
LS Contribution 332.27 15.07 5.01 5.01
Total: -1.00 -30.60 332.27 -10.57 -41.17
By element:
Atomic # 1 Polarization: 8.00 SS G_CDS: -7.57 Total: 0.43 kcal
Atomic # 6 Polarization: -16.39 SS G_CDS: -2.32 Total: -18.71 kcal
Atomic # 7 Polarization: -38.40 SS G_CDS: -0.31 Total: -38.70 kcal
Atomic # 8 Polarization: -5.82 SS G_CDS: -0.36 Total: -6.18 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -30.60 -10.57 -41.17 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000720867726.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.838 kcal
(2) G-P(sol) polarization free energy of solvation -30.598 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.330 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds