Wall clock time and date at job start Mon Mar 30 2020 07:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47083 * 89.99793 * 3 2 1 5 5 H 1.48501 * 109.47406 * 210.00370 * 3 2 1 6 6 H 1.48507 * 109.46488 * 330.00317 * 3 2 1 7 7 C 1.37881 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99948 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47343 * 174.76696 * 9 7 2 11 11 C 1.46899 * 111.00173 * 162.27706 * 10 9 7 12 12 C 1.52994 * 109.47091 * 190.00343 * 11 10 9 13 13 H 1.09005 * 110.01656 * 306.38691 * 12 11 10 14 14 C 1.55910 * 110.03122 * 185.00173 * 12 11 10 15 15 C 1.51587 * 102.19470 * 245.80184 * 14 12 11 16 16 H 1.09001 * 110.62953 * 84.62763 * 15 14 12 17 17 C 1.51086 * 122.75974 * 218.98535 * 15 14 12 18 18 C 1.55708 * 104.51427 * 142.66714 * 17 15 14 19 19 C 1.56252 * 105.89409 * 352.88952 * 18 17 15 20 20 C 1.50713 * 101.85799 * 335.46299 * 19 18 17 21 21 H 1.08995 * 108.84587 * 291.98450 * 20 19 18 22 22 O 1.39672 * 127.82478 * 158.72108 * 20 19 18 23 23 C 1.46901 * 110.99997 * 286.23282 * 10 9 7 24 24 C 1.53004 * 117.49911 * 141.69588 * 23 10 9 25 25 C 1.53001 * 59.99964 * 252.51015 * 24 23 10 26 26 H 0.96996 * 119.99973 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46500 * 294.77025 * 9 7 2 28 28 H 1.09005 * 109.47080 * 54.76287 * 9 7 2 29 29 H 1.08996 * 109.46860 * 309.99821 * 11 10 9 30 30 H 1.08999 * 109.46881 * 69.99987 * 11 10 9 31 31 H 1.08994 * 110.85963 * 3.97831 * 14 12 11 32 32 H 1.09003 * 110.85955 * 127.42627 * 14 12 11 33 33 H 1.08996 * 110.42706 * 261.42872 * 17 15 14 34 34 H 1.09003 * 110.41993 * 23.91479 * 17 15 14 35 35 H 1.08995 * 110.16695 * 233.77918 * 18 17 15 36 36 H 1.09000 * 110.16216 * 111.99053 * 18 17 15 37 37 H 1.08994 * 110.95263 * 217.32110 * 19 18 17 38 38 H 1.08993 * 110.95102 * 93.60128 * 19 18 17 39 39 H 1.08997 * 115.55054 * 287.40184 * 23 10 9 40 40 H 1.08999 * 117.49605 * 0.02562 * 24 23 10 41 41 H 1.09000 * 117.49877 * 145.01949 * 24 23 10 42 42 H 1.08996 * 117.49638 * 252.50815 * 25 24 23 43 43 H 1.09004 * 117.49823 * 107.49271 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2006 -3.6128 -0.1284 11 6 1.5824 -4.8810 0.2807 12 6 2.6576 -5.9654 0.3750 13 1 3.2159 -6.0195 -0.5596 14 6 1.9995 -7.3445 0.6846 15 6 2.5360 -7.6518 2.0686 16 1 1.9232 -7.1740 2.8329 17 6 2.9509 -9.0407 2.4947 18 6 4.2009 -8.8155 3.3954 19 6 4.5415 -7.2948 3.2823 20 6 3.9374 -6.9406 1.9477 21 1 4.5035 -7.4398 1.1614 22 8 3.5639 -5.6768 1.4849 23 6 2.7284 -3.7015 -1.4965 24 6 4.2042 -4.0698 -1.6618 25 6 3.7377 -2.6384 -1.9347 26 1 -0.4850 0.8400 -0.0004 27 1 0.6961 -2.5992 0.9312 28 1 0.5562 -2.5169 -0.8414 29 1 1.1063 -4.7560 1.2531 30 1 0.8340 -5.1744 -0.4554 31 1 0.9128 -7.2614 0.6993 32 1 2.3197 -8.0977 -0.0353 33 1 2.1532 -9.5183 3.0636 34 1 3.2124 -9.6432 1.6248 35 1 5.0366 -9.4156 3.0352 36 1 3.9705 -9.0731 4.4291 37 1 5.6198 -7.1362 3.2764 38 1 4.0701 -6.7290 4.0858 39 1 2.0298 -4.0719 -2.2467 40 1 4.7834 -4.2466 -0.7555 41 1 4.4768 -4.6827 -2.5210 42 1 3.7033 -2.3097 -2.9733 43 1 4.0101 -1.8731 -1.2079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720867726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:26 Heat of formation + Delta-G solvation = -2.329871 kcal Electronic energy + Delta-G solvation = -21019.559921 eV Core-core repulsion = 18065.899784 eV Total energy + Delta-G solvation = -2953.660137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58920 -37.66217 -35.74209 -33.59587 -32.59314 -31.57362 -28.63215 -27.76380 -26.21929 -23.74326 -22.19821 -21.60551 -21.05721 -20.52359 -20.01511 -19.38250 -16.81140 -16.33095 -15.48714 -15.28200 -14.88929 -14.54257 -14.40819 -14.33481 -13.90875 -13.38314 -12.72085 -12.42032 -12.35173 -12.13874 -11.99285 -11.64246 -11.44355 -11.26541 -11.14697 -10.96011 -10.77006 -10.67143 -10.63432 -10.55390 -10.42296 -10.07084 -9.80600 -9.48315 -9.22814 -9.04735 -8.96026 -8.32958 -7.18088 -5.94176 -3.93299 3.37267 3.42962 3.46625 3.56742 4.45133 4.53214 4.59353 4.63761 4.73045 4.82221 5.06447 5.11419 5.15042 5.29960 5.36509 5.41704 5.46193 5.59612 5.63393 5.72289 5.74083 5.79804 5.81751 5.84984 5.90608 5.98316 6.07957 6.19685 6.21912 6.24035 6.27778 6.31252 6.44762 6.54201 6.79627 7.06559 7.24458 7.35305 7.43931 7.94398 8.19320 8.29372 8.63570 9.13734 9.69285 11.16808 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.004617 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.976630 B = 6063.646103 C = 6211.476714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.053 3.947 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.289 1.289 7 C -0.494 4.494 8 H 0.069 0.931 9 C 0.196 3.804 10 N -0.502 5.502 11 C 0.062 3.938 12 C 0.086 3.914 13 H 0.077 0.923 14 C -0.138 4.138 15 C -0.149 4.149 16 H 0.085 0.915 17 C -0.108 4.108 18 C -0.119 4.119 19 C -0.104 4.104 20 C 0.059 3.941 21 H 0.046 0.954 22 O -0.330 6.330 23 C 0.024 3.976 24 C -0.188 4.188 25 C -0.151 4.151 26 H 0.259 0.741 27 H 0.025 0.975 28 H -0.005 1.005 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 -17.795 2.033 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.215 1.215 7 C -0.533 4.533 8 H 0.087 0.913 9 C 0.071 3.929 10 N -0.227 5.227 11 C -0.066 4.066 12 C 0.028 3.972 13 H 0.095 0.905 14 C -0.176 4.176 15 C -0.168 4.168 16 H 0.103 0.897 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.142 4.142 20 C -0.001 4.001 21 H 0.064 0.936 22 O -0.248 6.248 23 C -0.085 4.085 24 C -0.225 4.225 25 C -0.188 4.188 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.013 0.987 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.671 -17.350 2.422 18.745 hybrid contribution -0.508 0.621 -0.675 1.049 sum 6.163 -16.729 1.747 17.913 Atomic orbital electron populations 1.69957 1.06033 1.26528 1.51824 1.24977 0.94811 0.99153 0.95832 0.86557 0.79772 0.83392 0.78054 1.20762 1.19805 1.21478 1.21265 0.93640 0.89618 1.48769 0.91345 1.19713 0.89779 0.87493 0.95896 1.61869 1.38422 1.02704 1.19683 1.22147 0.93558 0.90404 1.00522 1.23750 0.90563 0.92727 0.90141 0.90511 1.22454 1.01374 0.97320 0.96473 1.22829 0.98971 0.97247 0.97746 0.89702 1.21586 0.97494 0.96010 0.99448 1.22835 0.97537 0.95213 1.00061 1.21758 1.00735 0.95691 0.96012 1.22473 0.95307 0.85655 0.96670 0.93576 1.88707 1.63348 1.23837 1.48885 1.22064 0.90616 1.04648 0.91177 1.23066 0.97945 0.99510 1.02023 1.23036 1.02183 0.92377 1.01214 0.93124 0.95733 0.98670 0.90643 0.94707 0.90477 0.91043 0.91643 0.91638 0.91495 0.91269 0.90997 0.90574 0.91619 0.88600 0.90478 0.90239 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.49 -13.99 8.03 -34.44 -0.28 -14.26 16 8 H 0.07 1.92 5.49 -52.49 -0.29 1.63 16 9 C 0.20 5.20 4.75 -4.98 -0.02 5.18 16 10 N -0.50 -11.19 4.57 -228.08 -1.04 -12.24 16 11 C 0.06 1.16 4.47 -3.83 -0.02 1.15 16 12 C 0.09 1.35 3.20 -25.18 -0.08 1.27 16 13 H 0.08 1.22 6.04 -51.93 -0.31 0.90 16 14 C -0.14 -1.71 6.41 -25.89 -0.17 -1.87 16 15 C -0.15 -1.78 3.19 -89.78 -0.29 -2.06 16 16 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 17 C -0.11 -1.00 6.62 -26.25 -0.17 -1.17 16 18 C -0.12 -1.03 6.94 -23.54 -0.16 -1.19 16 19 C -0.10 -1.15 6.75 -26.13 -0.18 -1.33 16 20 C 0.06 0.79 3.42 -25.35 -0.09 0.70 16 21 H 0.05 0.60 7.98 -51.93 -0.41 0.19 16 22 O -0.33 -5.82 11.22 -32.03 -0.36 -6.18 16 23 C 0.02 0.49 4.28 -67.71 -0.29 0.20 16 24 C -0.19 -3.26 8.79 -26.73 -0.24 -3.49 16 25 C -0.15 -2.99 9.39 -26.73 -0.25 -3.24 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.70 7.77 -51.93 -0.40 0.29 16 28 H 0.00 -0.13 8.03 -51.93 -0.42 -0.55 16 29 H 0.08 1.47 7.84 -51.93 -0.41 1.06 16 30 H 0.03 0.62 8.12 -51.93 -0.42 0.19 16 31 H 0.08 0.92 7.76 -51.93 -0.40 0.51 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.11 2.55 5.60 -51.93 -0.29 2.26 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -30.60 332.27 -10.57 -41.17 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.57 Total: 0.43 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.32 Total: -18.71 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.31 Total: -38.70 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.36 Total: -6.18 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.60 -10.57 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720867726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.838 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds