Wall clock time and date at job start Mon Mar 30 2020 07:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47083 * 89.99793 * 3 2 1 5 5 H 1.48501 * 109.47406 * 210.00370 * 3 2 1 6 6 H 1.48507 * 109.46488 * 330.00317 * 3 2 1 7 7 C 1.37881 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99948 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47343 * 174.76696 * 9 7 2 11 11 C 1.46899 * 111.00173 * 162.27706 * 10 9 7 12 12 C 1.52994 * 109.47091 * 190.00343 * 11 10 9 13 13 H 1.09005 * 110.01656 * 306.38691 * 12 11 10 14 14 C 1.55910 * 110.03122 * 185.00173 * 12 11 10 15 15 C 1.51587 * 102.19470 * 245.80184 * 14 12 11 16 16 H 1.09001 * 110.62953 * 84.62763 * 15 14 12 17 17 C 1.51086 * 122.75974 * 218.98535 * 15 14 12 18 18 C 1.55708 * 104.51427 * 142.66714 * 17 15 14 19 19 C 1.56252 * 105.89409 * 352.88952 * 18 17 15 20 20 C 1.50713 * 101.85799 * 335.46299 * 19 18 17 21 21 H 1.08995 * 108.84587 * 291.98450 * 20 19 18 22 22 O 1.39672 * 127.82478 * 158.72108 * 20 19 18 23 23 C 1.46901 * 110.99997 * 286.23282 * 10 9 7 24 24 C 1.53004 * 117.49911 * 141.69588 * 23 10 9 25 25 C 1.53001 * 59.99964 * 252.51015 * 24 23 10 26 26 H 0.96996 * 119.99973 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46500 * 294.77025 * 9 7 2 28 28 H 1.09005 * 109.47080 * 54.76287 * 9 7 2 29 29 H 1.08996 * 109.46860 * 309.99821 * 11 10 9 30 30 H 1.08999 * 109.46881 * 69.99987 * 11 10 9 31 31 H 1.08994 * 110.85963 * 3.97831 * 14 12 11 32 32 H 1.09003 * 110.85955 * 127.42627 * 14 12 11 33 33 H 1.08996 * 110.42706 * 261.42872 * 17 15 14 34 34 H 1.09003 * 110.41993 * 23.91479 * 17 15 14 35 35 H 1.08995 * 110.16695 * 233.77918 * 18 17 15 36 36 H 1.09000 * 110.16216 * 111.99053 * 18 17 15 37 37 H 1.08994 * 110.95263 * 217.32110 * 19 18 17 38 38 H 1.08993 * 110.95102 * 93.60128 * 19 18 17 39 39 H 1.08997 * 115.55054 * 287.40184 * 23 10 9 40 40 H 1.08999 * 117.49605 * 0.02562 * 24 23 10 41 41 H 1.09000 * 117.49877 * 145.01949 * 24 23 10 42 42 H 1.08996 * 117.49638 * 252.50815 * 25 24 23 43 43 H 1.09004 * 117.49823 * 107.49271 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2006 -3.6128 -0.1284 11 6 1.5824 -4.8810 0.2807 12 6 2.6576 -5.9654 0.3750 13 1 3.2159 -6.0195 -0.5596 14 6 1.9995 -7.3445 0.6846 15 6 2.5360 -7.6518 2.0686 16 1 1.9232 -7.1740 2.8329 17 6 2.9509 -9.0407 2.4947 18 6 4.2009 -8.8155 3.3954 19 6 4.5415 -7.2948 3.2823 20 6 3.9374 -6.9406 1.9477 21 1 4.5035 -7.4398 1.1614 22 8 3.5639 -5.6768 1.4849 23 6 2.7284 -3.7015 -1.4965 24 6 4.2042 -4.0698 -1.6618 25 6 3.7377 -2.6384 -1.9347 26 1 -0.4850 0.8400 -0.0004 27 1 0.6961 -2.5992 0.9312 28 1 0.5562 -2.5169 -0.8414 29 1 1.1063 -4.7560 1.2531 30 1 0.8340 -5.1744 -0.4554 31 1 0.9128 -7.2614 0.6993 32 1 2.3197 -8.0977 -0.0353 33 1 2.1532 -9.5183 3.0636 34 1 3.2124 -9.6432 1.6248 35 1 5.0366 -9.4156 3.0352 36 1 3.9705 -9.0731 4.4291 37 1 5.6198 -7.1362 3.2764 38 1 4.0701 -6.7290 4.0858 39 1 2.0298 -4.0719 -2.2467 40 1 4.7834 -4.2466 -0.7555 41 1 4.4768 -4.6827 -2.5210 42 1 3.7033 -2.3097 -2.9733 43 1 4.0101 -1.8731 -1.2079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720867726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:26 Heat of formation + Delta-G solvation = -20.945859 kcal Electronic energy + Delta-G solvation = -21020.367171 eV Core-core repulsion = 18065.899784 eV Total energy + Delta-G solvation = -2954.467387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66353 -39.25519 -36.79065 -35.37171 -34.47057 -32.87134 -30.19633 -28.63767 -27.91165 -25.08028 -24.14022 -23.11518 -22.28326 -21.58102 -21.07102 -20.83259 -18.63396 -17.67614 -16.82234 -16.73236 -16.44406 -16.07884 -15.78442 -15.42015 -15.19819 -14.88782 -14.41139 -13.88562 -13.63510 -13.35323 -13.28445 -13.18436 -12.91749 -12.76623 -12.62947 -12.41271 -12.32695 -12.12255 -11.94084 -11.64405 -11.50105 -11.36352 -11.23470 -11.13626 -10.90166 -10.68020 -10.53896 -10.29941 -8.98142 -8.15958 -6.23537 1.40240 1.41815 1.52727 2.41465 2.53106 3.03096 3.15872 3.22279 3.58050 3.72155 3.83774 3.93794 4.10071 4.18222 4.19559 4.29774 4.38149 4.40216 4.44560 4.51667 4.61354 4.62457 4.71678 4.79264 4.87644 4.89645 4.91834 5.02845 5.06828 5.09490 5.15665 5.18603 5.24547 5.29497 5.35861 5.36224 5.47362 5.50261 5.77910 6.09200 6.19247 6.43364 6.67451 6.91963 7.44346 8.95073 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.004617 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.976630 B = 6063.646103 C = 6211.476714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.262 1.262 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.212 3.788 10 N -0.513 5.513 11 C 0.061 3.939 12 C 0.090 3.910 13 H 0.081 0.919 14 C -0.130 4.130 15 C -0.143 4.143 16 H 0.065 0.935 17 C -0.103 4.103 18 C -0.111 4.111 19 C -0.108 4.108 20 C 0.042 3.958 21 H 0.055 0.945 22 O -0.368 6.368 23 C 0.002 3.998 24 C -0.145 4.145 25 C -0.166 4.166 26 H 0.262 0.738 27 H -0.006 1.006 28 H -0.033 1.033 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.101 -19.664 1.442 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.186 1.186 6 H -0.208 1.208 7 C -0.544 4.544 8 H 0.086 0.914 9 C 0.086 3.914 10 N -0.237 5.237 11 C -0.067 4.067 12 C 0.033 3.967 13 H 0.099 0.901 14 C -0.168 4.168 15 C -0.162 4.162 16 H 0.084 0.916 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.016 4.016 21 H 0.073 0.927 22 O -0.287 6.287 23 C -0.107 4.107 24 C -0.183 4.183 25 C -0.203 4.203 26 H 0.071 0.929 27 H 0.012 0.988 28 H -0.016 1.016 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.409 -19.247 1.833 21.084 hybrid contribution -1.049 1.182 -0.470 1.649 sum 7.360 -18.065 1.363 19.554 Atomic orbital electron populations 1.70089 1.07689 1.27585 1.52710 1.25863 0.95653 1.02932 0.95280 0.85472 0.78760 0.78695 0.78264 1.20257 1.18640 1.20817 1.21545 0.93734 0.90587 1.48518 0.91401 1.19345 0.89760 0.89272 0.93044 1.61784 1.37320 1.03018 1.21599 1.22218 0.94995 0.89967 0.99507 1.23690 0.89708 0.93133 0.90135 0.90119 1.22426 1.01298 0.95661 0.97434 1.22807 0.97567 0.98870 0.96917 0.91640 1.21610 0.98008 0.94206 1.00239 1.22826 0.97870 0.93212 1.00897 1.21861 1.00898 0.97469 0.94311 1.22797 0.96636 0.84178 0.98036 0.92680 1.88653 1.63875 1.26625 1.49591 1.22197 0.92211 1.06232 0.90084 1.23039 0.94779 0.97692 1.02780 1.22999 1.03001 0.92939 1.01386 0.92937 0.98841 1.01572 0.92623 0.93810 0.90253 0.88435 0.90491 0.90182 0.89748 0.90031 0.90382 0.91889 0.90941 0.89537 0.86546 0.88441 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.51 -29.54 8.03 25.60 0.21 -29.33 16 8 H 0.07 3.92 5.49 -2.91 -0.02 3.90 16 9 C 0.21 11.85 4.75 85.56 0.41 12.25 16 10 N -0.51 -23.61 4.57 -875.52 -4.00 -27.61 16 11 C 0.06 2.36 4.47 86.30 0.39 2.75 16 12 C 0.09 2.81 3.20 31.60 0.10 2.91 16 13 H 0.08 2.42 6.04 -2.38 -0.01 2.40 16 14 C -0.13 -2.99 6.41 31.14 0.20 -2.79 16 15 C -0.14 -3.19 3.19 -10.25 -0.03 -3.22 16 16 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 17 C -0.10 -1.59 6.62 30.91 0.20 -1.38 16 18 C -0.11 -1.59 6.94 32.66 0.23 -1.36 16 19 C -0.11 -2.24 6.75 30.98 0.21 -2.03 16 20 C 0.04 1.10 3.42 31.49 0.11 1.20 16 21 H 0.06 1.32 7.98 -2.39 -0.02 1.30 16 22 O -0.37 -13.07 11.22 -137.52 -1.54 -14.61 16 23 C 0.00 0.07 4.28 44.92 0.19 0.26 16 24 C -0.15 -4.75 8.79 30.60 0.27 -4.48 16 25 C -0.17 -6.49 9.39 30.60 0.29 -6.20 16 26 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 27 H -0.01 -0.39 7.77 -2.38 -0.02 -0.41 16 28 H -0.03 -2.02 8.03 -2.38 -0.02 -2.04 16 29 H 0.06 2.31 7.84 -2.39 -0.02 2.29 16 30 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 31 H 0.08 1.79 7.76 -2.39 -0.02 1.77 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.08 3.81 5.60 -2.38 -0.01 3.79 16 Total: -1.00 -68.59 332.27 0.95 -67.64 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.96 Total: 15.70 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 3.22 Total: -30.98 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -3.72 Total: -85.52 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.54 Total: -14.61 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -68.59 0.95 -67.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720867726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.696 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds