Wall clock time and date at job start Mon Mar 30 2020 07:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99867 * 2 1 4 4 H 1.48504 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47349 * 299.99855 * 3 2 1 6 6 H 1.48504 * 109.46922 * 59.99942 * 3 2 1 7 7 C 1.37882 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99926 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.87745 * 62.38758 * 9 7 2 11 11 C 1.55144 * 110.99060 * 298.54292 * 9 7 2 12 12 C 1.54318 * 103.01667 * 206.21898 * 11 9 7 13 13 N 1.47438 * 107.23495 * 22.28284 * 12 11 9 14 14 C 1.46902 * 110.99777 * 123.26122 * 13 12 11 15 15 C 1.52994 * 109.47341 * 69.87182 * 14 13 12 16 16 H 1.08998 * 110.01627 * 306.38788 * 15 14 13 17 17 C 1.55907 * 110.03149 * 185.00306 * 15 14 13 18 18 C 1.51584 * 102.19129 * 245.76291 * 17 15 14 19 19 H 1.09000 * 110.62358 * 84.61111 * 18 17 15 20 20 C 1.51085 * 122.77300 * 218.96611 * 18 17 15 21 21 C 1.55699 * 104.51237 * 142.68247 * 20 18 17 22 22 C 1.56251 * 105.89765 * 352.88586 * 21 20 18 23 23 C 1.50717 * 101.85394 * 335.46480 * 22 21 20 24 24 H 1.08999 * 108.85920 * 292.91088 * 23 22 21 25 25 O 1.39684 * 127.80250 * 158.69843 * 23 22 21 26 26 C 1.47838 * 108.57054 * 0.98886 * 13 12 11 27 27 H 0.96992 * 120.00229 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.70262 * 87.83297 * 11 9 7 29 29 H 1.08999 * 110.85113 * 324.67121 * 11 9 7 30 30 H 1.09003 * 109.88312 * 262.87300 * 12 11 9 31 31 H 1.09000 * 109.88703 * 141.69041 * 12 11 9 32 32 H 1.09006 * 109.46833 * 309.86843 * 14 13 12 33 33 H 1.08998 * 109.46948 * 189.87399 * 14 13 12 34 34 H 1.09000 * 110.86212 * 3.93659 * 17 15 14 35 35 H 1.08997 * 110.86112 * 127.58983 * 17 15 14 36 36 H 1.09006 * 110.42225 * 23.92873 * 20 18 17 37 37 H 1.08992 * 110.53291 * 261.49823 * 20 18 17 38 38 H 1.09000 * 110.16643 * 233.77668 * 21 20 18 39 39 H 1.08998 * 110.22676 * 112.02534 * 21 20 18 40 40 H 1.09002 * 110.95415 * 217.32269 * 22 21 20 41 41 H 1.08998 * 110.94872 * 93.59944 * 22 21 20 42 42 H 1.09006 * 110.37380 * 94.72936 * 26 13 12 43 43 H 1.08996 * 110.37744 * 217.07768 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6484 -2.5998 -0.9021 11 6 0.3734 -2.6341 1.2727 12 6 0.2524 -4.1622 1.4510 13 7 1.3907 -4.7761 0.7429 14 6 2.1839 -5.6160 1.6503 15 6 1.3804 -6.8631 2.0241 16 1 0.4055 -6.5748 2.4173 17 6 2.1573 -7.7009 3.0848 18 6 2.4750 -8.9705 2.3199 19 1 3.3847 -8.8472 1.7323 20 6 2.4179 -10.3418 2.9514 21 6 1.8528 -11.2640 1.8314 22 6 1.4425 -10.3136 0.6610 23 6 1.2059 -9.0137 1.3861 24 1 0.3339 -9.1234 2.0307 25 8 1.2141 -7.7224 0.8535 26 6 2.2180 -3.6991 0.1588 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6074 -2.1858 1.1135 29 1 0.8665 -2.1834 2.1339 30 1 -0.6853 -4.5127 1.0197 31 1 0.2938 -4.4163 2.5101 32 1 2.4211 -5.0525 2.5527 33 1 3.1079 -5.9141 1.1548 34 1 3.0720 -7.1914 3.3879 35 1 1.5269 -7.9153 3.9478 36 1 1.7498 -10.3364 3.8128 37 1 3.4149 -10.6687 3.2464 38 1 0.9818 -11.8082 2.1965 39 1 2.6190 -11.9632 1.4966 40 1 0.5297 -10.6620 0.1776 41 1 2.2516 -10.2146 -0.0626 42 1 3.0357 -3.4412 0.8318 43 1 2.6067 -4.0038 -0.8129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720870617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:56 Heat of formation + Delta-G solvation = -55.458496 kcal Electronic energy + Delta-G solvation = -20653.282220 eV Core-core repulsion = 17697.318253 eV Total energy + Delta-G solvation = -2955.963967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70875 -39.66388 -36.88999 -35.18572 -33.49688 -31.95614 -30.02626 -28.93900 -28.59031 -26.41614 -24.89158 -22.64589 -21.73125 -21.50976 -21.06216 -20.85763 -18.53962 -17.71424 -16.97958 -16.75166 -16.30711 -16.28852 -15.75047 -15.44388 -15.06845 -14.37755 -14.31118 -13.94803 -13.85646 -13.39795 -13.28815 -13.03648 -12.97676 -12.81289 -12.75382 -12.43442 -12.29047 -12.12196 -12.08099 -11.65655 -11.54888 -11.48895 -11.37642 -11.11143 -11.05843 -10.88713 -10.51723 -10.35480 -9.12488 -8.14815 -6.26118 1.39766 1.41263 1.53184 2.41243 2.49083 3.11581 3.17092 3.55579 3.68096 3.81285 3.89690 4.05449 4.11294 4.21171 4.32618 4.36529 4.41324 4.42592 4.49512 4.53454 4.59715 4.65140 4.71233 4.78878 4.85014 4.90554 4.98947 5.03583 5.05419 5.14796 5.19913 5.23057 5.26252 5.31436 5.33512 5.49179 5.58085 5.79735 5.89559 6.04581 6.08829 6.34382 6.36826 6.83123 7.41886 8.94533 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.054651 B = 0.003524 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.218974 B = 7942.871164 C = 8019.122331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.038 3.962 10 H 0.000 1.000 11 C -0.106 4.106 12 C 0.050 3.950 13 N -0.536 5.536 14 C 0.056 3.944 15 C 0.085 3.915 16 H 0.068 0.932 17 C -0.129 4.129 18 C -0.141 4.141 19 H 0.073 0.927 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.106 4.106 23 C 0.041 3.959 24 H 0.050 0.950 25 O -0.367 6.367 26 C 0.061 3.939 27 H 0.261 0.739 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -21.139 8.495 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.019 3.981 10 H 0.018 0.982 11 C -0.145 4.145 12 C -0.078 4.078 13 N -0.260 5.260 14 C -0.073 4.073 15 C 0.027 3.973 16 H 0.086 0.914 17 C -0.167 4.167 18 C -0.160 4.160 19 H 0.092 0.908 20 C -0.142 4.142 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.018 4.018 24 H 0.068 0.932 25 O -0.286 6.286 26 C -0.066 4.066 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.863 -21.297 7.887 23.037 hybrid contribution 0.342 1.860 0.427 1.939 sum 4.205 -19.437 8.314 21.555 Atomic orbital electron populations 1.70103 1.07322 1.27276 1.50957 1.25796 0.95711 1.02571 0.94558 0.85493 0.79078 0.79372 0.77633 1.18979 1.20625 1.20483 1.21405 0.92984 0.91587 1.51217 0.92638 1.19690 0.92920 0.92218 0.93317 0.98177 1.22456 1.00162 0.93458 0.98451 1.22805 0.94502 0.93807 0.96655 1.63538 1.09247 1.20610 1.32615 1.22430 0.96434 0.93048 0.95357 1.23727 0.98338 0.90304 0.84896 0.91409 1.22416 1.01348 0.95553 0.97398 1.22818 0.99260 0.95186 0.98764 0.90842 1.21611 1.02308 0.92290 0.98030 1.22831 1.01661 0.97079 0.93398 1.21849 1.02174 0.91839 0.98489 1.22796 0.97439 0.86184 0.95404 0.93233 1.88626 1.93920 1.15980 1.30083 1.22914 0.95332 0.90425 0.97976 0.92985 0.93406 0.94485 0.92063 0.92103 0.92696 0.90689 0.89460 0.88956 0.90602 0.90269 0.90129 0.89828 0.90577 0.91298 0.94399 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.26 12.12 21.45 0.26 -54.00 16 2 C 0.01 0.72 5.34 84.66 0.45 1.17 16 3 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.53 -30.20 8.55 25.60 0.22 -29.98 16 8 H 0.06 3.07 7.79 -2.91 -0.02 3.05 16 9 C 0.04 2.00 2.96 -10.15 -0.03 1.97 16 10 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 11 C -0.11 -5.20 5.64 31.78 0.18 -5.02 16 12 C 0.05 2.01 6.12 86.65 0.53 2.54 16 13 N -0.54 -21.44 5.15 -885.56 -4.56 -26.00 16 14 C 0.06 1.76 4.06 86.30 0.35 2.11 16 15 C 0.08 2.33 3.35 31.60 0.11 2.44 16 16 H 0.07 1.92 7.07 -2.39 -0.02 1.90 16 17 C -0.13 -2.54 6.41 31.14 0.20 -2.35 16 18 C -0.14 -2.69 3.19 -10.25 -0.03 -2.72 16 19 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 20 C -0.10 -1.39 6.61 30.90 0.20 -1.18 16 21 C -0.11 -1.39 6.94 32.66 0.23 -1.16 16 22 C -0.11 -1.92 6.75 30.98 0.21 -1.71 16 23 C 0.04 0.95 3.44 31.49 0.11 1.05 16 24 H 0.05 1.12 7.95 -2.39 -0.02 1.10 16 25 O -0.37 -11.67 11.22 -137.65 -1.54 -13.22 16 26 C 0.06 2.72 6.13 86.78 0.53 3.25 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.05 2.54 7.53 -2.39 -0.02 2.52 16 29 H 0.04 1.84 8.04 -2.39 -0.02 1.82 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.06 2.11 6.97 -2.39 -0.02 2.09 16 32 H 0.06 1.64 7.96 -2.38 -0.02 1.62 16 33 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 34 H 0.09 1.58 7.76 -2.39 -0.02 1.56 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.65 7.70 -2.38 -0.02 1.63 16 43 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -64.46 329.54 0.38 -64.08 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.95 Total: 12.58 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 3.25 Total: -29.59 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -4.30 Total: -80.00 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -1.54 Total: -13.22 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -64.46 0.38 -64.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720870617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.621 kcal (2) G-P(sol) polarization free energy of solvation -64.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds