Wall clock time and date at job start Mon Mar 30 2020 07:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99852 * 2 1 4 4 H 1.48508 * 109.46991 * 239.72142 * 3 2 1 5 5 H 1.48496 * 109.47419 * 359.71811 * 3 2 1 6 6 H 1.48493 * 109.47568 * 119.72371 * 3 2 1 7 7 C 1.37877 * 119.99919 * 179.71947 * 2 1 3 8 8 H 1.08003 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00340 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.64310 * 59.29498 * 9 7 2 11 11 C 1.54601 * 110.71984 * 296.14730 * 9 7 2 12 12 C 1.53993 * 105.13729 * 219.68021 * 11 9 7 13 13 N 1.47898 * 107.06045 * 358.77896 * 12 11 9 14 14 C 1.46896 * 111.00543 * 145.83979 * 13 12 11 15 15 C 1.52995 * 109.47685 * 183.82185 * 14 13 12 16 16 H 1.09002 * 110.33036 * 308.53714 * 15 14 13 17 17 C 1.54431 * 110.37738 * 186.28140 * 15 14 13 18 18 C 1.54269 * 104.16459 * 216.27078 * 17 15 14 19 19 H 1.09000 * 112.75201 * 238.93043 * 18 17 15 20 20 C 1.54647 * 108.82902 * 113.04656 * 18 17 15 21 21 C 1.55767 * 102.50221 * 212.16954 * 20 18 17 22 22 C 1.54204 * 104.60247 * 37.27491 * 21 20 18 23 23 C 1.53810 * 106.77488 * 336.45382 * 22 21 20 24 24 H 1.09004 * 111.85732 * 238.02516 * 23 22 21 25 25 O 1.44292 * 110.37382 * 70.90308 * 15 14 13 26 26 C 1.48733 * 105.94193 * 25.19905 * 13 12 11 27 27 H 0.97002 * 120.00167 * 0.28538 * 1 2 3 28 28 H 1.08995 * 110.31059 * 338.60003 * 11 9 7 29 29 H 1.09000 * 110.30786 * 100.76833 * 11 9 7 30 30 H 1.08999 * 109.91634 * 118.13248 * 12 11 9 31 31 H 1.08999 * 109.92062 * 239.22455 * 12 11 9 32 32 H 1.09001 * 109.47212 * 303.82808 * 14 13 12 33 33 H 1.09003 * 109.46634 * 63.82195 * 14 13 12 34 34 H 1.08999 * 110.49204 * 334.93801 * 17 15 14 35 35 H 1.09000 * 110.49340 * 97.46263 * 17 15 14 36 36 H 1.09001 * 110.72035 * 330.05039 * 20 18 17 37 37 H 1.09002 * 110.72769 * 93.32956 * 20 18 17 38 38 H 1.09001 * 109.93832 * 278.64460 * 21 20 18 39 39 H 1.08994 * 110.75365 * 156.32305 * 21 20 18 40 40 H 1.09003 * 109.99690 * 217.12495 * 22 21 20 41 41 H 1.09000 * 110.03449 * 95.80049 * 22 21 20 42 42 H 1.09002 * 110.83876 * 202.58115 * 26 13 12 43 43 H 1.09000 * 110.58632 * 79.38529 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1079 1.6935 -1.2092 5 1 1.2841 2.7464 -0.0069 6 1 3.0977 1.6995 1.2158 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1941 0.0063 9 6 1.2510 -2.4992 0.0117 10 1 0.6082 -2.5757 -0.8652 11 6 0.4252 -2.6482 1.3101 12 6 0.5677 -4.1286 1.7096 13 7 1.4011 -4.7789 0.6752 14 6 2.2449 -5.8284 1.2620 15 6 3.1587 -6.4113 0.1822 16 1 2.5748 -6.7049 -0.6901 17 6 3.9424 -7.6211 0.7366 18 6 5.3260 -7.5156 0.0626 19 1 5.5761 -8.3976 -0.5270 20 6 6.3852 -7.1990 1.1441 21 6 7.4179 -6.3343 0.3617 22 6 6.5627 -5.4736 -0.5900 23 6 5.2343 -6.2222 -0.7925 24 1 5.0481 -6.4411 -1.8439 25 8 4.1726 -5.4539 -0.1884 26 6 2.2307 -3.6975 0.0797 27 1 -0.4850 0.8400 -0.0042 28 1 0.8294 -2.0048 2.0915 29 1 -0.6209 -2.4059 1.1230 30 1 1.0551 -4.2056 2.6815 31 1 -0.4148 -4.5989 1.7488 32 1 2.8521 -5.4023 2.0607 33 1 1.6127 -6.6181 1.6681 34 1 4.0392 -7.5490 1.8199 35 1 3.4508 -8.5536 0.4596 36 1 5.9447 -6.6240 1.9586 37 1 6.8393 -8.1161 1.5195 38 1 8.0885 -6.9793 -0.2062 39 1 7.9857 -5.7005 1.0428 40 1 7.0733 -5.3552 -1.5458 41 1 6.3758 -4.4968 -0.1439 42 1 2.5698 -3.9742 -0.9186 43 1 3.0783 -3.4654 0.7245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720870619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:01 Heat of formation + Delta-G solvation = -55.933542 kcal Electronic energy + Delta-G solvation = -21183.098732 eV Core-core repulsion = 18227.114165 eV Total energy + Delta-G solvation = -2955.984567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22215 -37.80083 -35.29662 -33.20174 -32.16009 -30.50757 -28.27652 -27.67050 -27.28627 -24.76896 -23.38910 -21.26473 -20.48227 -19.99967 -19.78090 -19.09567 -16.93451 -16.24351 -15.80644 -15.30222 -14.88625 -14.46104 -14.18252 -14.05231 -13.51080 -13.34898 -12.93494 -12.48563 -12.25171 -12.05047 -11.74919 -11.55600 -11.30876 -11.07904 -11.04367 -10.96777 -10.77845 -10.75021 -10.57049 -10.56316 -10.41605 -10.30939 -10.01925 -9.53428 -9.43795 -8.99135 -8.66275 -8.30170 -7.61795 -5.92933 -3.95074 3.37170 3.41322 3.44374 3.91884 4.39641 4.41139 4.49873 4.69285 4.83809 5.05043 5.14230 5.20339 5.27110 5.40199 5.43167 5.46658 5.50443 5.61255 5.64308 5.76617 5.83047 5.87009 5.89963 5.92178 6.02395 6.07791 6.16651 6.20192 6.23947 6.34096 6.39229 6.66131 6.77744 7.08018 7.22470 7.28609 7.30412 7.68491 7.78357 7.87189 7.99425 8.15593 8.57700 9.07888 9.68272 11.17165 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.005282 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.142433 B = 5299.324236 C = 6231.562637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.049 3.951 10 H 0.034 0.966 11 C -0.103 4.103 12 C 0.035 3.965 13 N -0.526 5.526 14 C 0.055 3.945 15 C 0.081 3.919 16 H 0.073 0.927 17 C -0.145 4.145 18 C -0.124 4.124 19 H 0.089 0.911 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.123 4.123 23 C 0.070 3.930 24 H 0.074 0.926 25 O -0.349 6.349 26 C 0.057 3.943 27 H 0.259 0.741 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.025 0.975 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.295 -16.053 1.721 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.142 4.142 12 C -0.093 4.093 13 N -0.250 5.250 14 C -0.074 4.074 15 C 0.023 3.977 16 H 0.091 0.909 17 C -0.183 4.183 18 C -0.142 4.142 19 H 0.107 0.893 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.161 4.161 23 C 0.012 3.988 24 H 0.092 0.908 25 O -0.268 6.268 26 C -0.070 4.070 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.798 -15.943 1.377 18.764 hybrid contribution 0.918 1.038 0.661 1.536 sum 10.716 -14.904 2.038 18.470 Atomic orbital electron populations 1.69971 1.05845 1.26414 1.50609 1.24964 0.94809 0.98892 0.95235 0.86715 0.79625 0.83411 0.78561 1.20294 1.21379 1.20413 1.21083 0.92764 0.90441 1.50649 0.92734 1.19575 0.92454 0.91337 0.93686 0.94774 1.22325 1.01298 0.90479 1.00054 1.22927 0.96558 0.97424 0.92365 1.64812 1.20654 1.11527 1.27985 1.22272 0.94189 0.96197 0.94737 1.22949 0.89714 0.87709 0.97318 0.90883 1.23017 0.95218 0.98902 1.01201 1.23242 0.95474 0.98440 0.97060 0.89292 1.22703 0.95905 0.99281 0.97366 1.22500 0.97526 0.97965 0.97989 1.22193 0.93792 1.00233 0.99849 1.23513 0.88638 0.90309 0.96314 0.90846 1.89329 1.28891 1.29571 1.79048 1.23311 0.95000 0.90490 0.98169 0.93119 0.92928 0.92296 0.95646 0.92218 0.94622 0.90637 0.90643 0.90925 0.91023 0.91643 0.91901 0.91542 0.91289 0.90016 0.91495 0.94470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 12.61 55.43 0.70 -25.57 16 2 C 0.06 1.78 5.34 -17.82 -0.10 1.69 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.57 8.40 -34.44 -0.29 -14.86 16 8 H 0.05 1.55 7.78 -52.48 -0.41 1.14 16 9 C 0.05 1.28 2.93 -89.91 -0.26 1.02 16 10 H 0.03 0.99 8.14 -51.93 -0.42 0.56 16 11 C -0.10 -2.52 5.65 -25.37 -0.14 -2.67 16 12 C 0.04 0.72 6.70 -2.76 -0.02 0.70 16 13 N -0.53 -10.57 5.34 -230.29 -1.23 -11.80 16 14 C 0.06 0.90 4.57 -3.83 -0.02 0.88 16 15 C 0.08 1.18 3.22 -25.98 -0.08 1.10 16 16 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.15 -1.61 6.16 -25.32 -0.16 -1.76 16 18 C -0.12 -1.29 3.96 -87.86 -0.35 -1.64 16 19 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 20 C -0.12 -1.14 6.29 -24.39 -0.15 -1.29 16 21 C -0.12 -1.19 6.84 -24.63 -0.17 -1.36 16 22 C -0.12 -1.45 6.58 -25.68 -0.17 -1.62 16 23 C 0.07 0.89 4.23 -25.08 -0.11 0.79 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 25 O -0.35 -5.75 7.99 -35.23 -0.28 -6.03 16 26 C 0.06 1.30 4.25 -1.79 -0.01 1.29 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.05 1.36 7.84 -51.93 -0.41 0.95 16 29 H 0.06 1.51 8.11 -51.93 -0.42 1.09 16 30 H 0.03 0.49 7.67 -51.93 -0.40 0.09 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.61 7.98 -51.93 -0.41 0.20 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.82 7.12 -51.93 -0.37 0.45 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.80 7.59 -51.93 -0.39 0.41 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 42 H 0.07 1.55 7.22 -51.93 -0.38 1.17 16 43 H 0.04 0.89 7.54 -51.93 -0.39 0.50 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -29.90 326.57 -10.71 -40.61 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.78 Total: -1.23 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -2.02 Total: -17.73 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.53 Total: -37.37 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.28 Total: -6.03 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.90 -10.71 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720870619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.322 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds