Wall clock time and date at job start Mon Mar 30 2020 07:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99852 * 2 1 4 4 H 1.48508 * 109.46991 * 239.72142 * 3 2 1 5 5 H 1.48496 * 109.47419 * 359.71811 * 3 2 1 6 6 H 1.48493 * 109.47568 * 119.72371 * 3 2 1 7 7 C 1.37877 * 119.99919 * 179.71947 * 2 1 3 8 8 H 1.08003 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00340 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.64310 * 59.29498 * 9 7 2 11 11 C 1.54601 * 110.71984 * 296.14730 * 9 7 2 12 12 C 1.53993 * 105.13729 * 219.68021 * 11 9 7 13 13 N 1.47898 * 107.06045 * 358.77896 * 12 11 9 14 14 C 1.46896 * 111.00543 * 145.83979 * 13 12 11 15 15 C 1.52995 * 109.47685 * 183.82185 * 14 13 12 16 16 H 1.09002 * 110.33036 * 308.53714 * 15 14 13 17 17 C 1.54431 * 110.37738 * 186.28140 * 15 14 13 18 18 C 1.54269 * 104.16459 * 216.27078 * 17 15 14 19 19 H 1.09000 * 112.75201 * 238.93043 * 18 17 15 20 20 C 1.54647 * 108.82902 * 113.04656 * 18 17 15 21 21 C 1.55767 * 102.50221 * 212.16954 * 20 18 17 22 22 C 1.54204 * 104.60247 * 37.27491 * 21 20 18 23 23 C 1.53810 * 106.77488 * 336.45382 * 22 21 20 24 24 H 1.09004 * 111.85732 * 238.02516 * 23 22 21 25 25 O 1.44292 * 110.37382 * 70.90308 * 15 14 13 26 26 C 1.48733 * 105.94193 * 25.19905 * 13 12 11 27 27 H 0.97002 * 120.00167 * 0.28538 * 1 2 3 28 28 H 1.08995 * 110.31059 * 338.60003 * 11 9 7 29 29 H 1.09000 * 110.30786 * 100.76833 * 11 9 7 30 30 H 1.08999 * 109.91634 * 118.13248 * 12 11 9 31 31 H 1.08999 * 109.92062 * 239.22455 * 12 11 9 32 32 H 1.09001 * 109.47212 * 303.82808 * 14 13 12 33 33 H 1.09003 * 109.46634 * 63.82195 * 14 13 12 34 34 H 1.08999 * 110.49204 * 334.93801 * 17 15 14 35 35 H 1.09000 * 110.49340 * 97.46263 * 17 15 14 36 36 H 1.09001 * 110.72035 * 330.05039 * 20 18 17 37 37 H 1.09002 * 110.72769 * 93.32956 * 20 18 17 38 38 H 1.09001 * 109.93832 * 278.64460 * 21 20 18 39 39 H 1.08994 * 110.75365 * 156.32305 * 21 20 18 40 40 H 1.09003 * 109.99690 * 217.12495 * 22 21 20 41 41 H 1.09000 * 110.03449 * 95.80049 * 22 21 20 42 42 H 1.09002 * 110.83876 * 202.58115 * 26 13 12 43 43 H 1.09000 * 110.58632 * 79.38529 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1079 1.6935 -1.2092 5 1 1.2841 2.7464 -0.0069 6 1 3.0977 1.6995 1.2158 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1941 0.0063 9 6 1.2510 -2.4992 0.0117 10 1 0.6082 -2.5757 -0.8652 11 6 0.4252 -2.6482 1.3101 12 6 0.5677 -4.1286 1.7096 13 7 1.4011 -4.7789 0.6752 14 6 2.2449 -5.8284 1.2620 15 6 3.1587 -6.4113 0.1822 16 1 2.5748 -6.7049 -0.6901 17 6 3.9424 -7.6211 0.7366 18 6 5.3260 -7.5156 0.0626 19 1 5.5761 -8.3976 -0.5270 20 6 6.3852 -7.1990 1.1441 21 6 7.4179 -6.3343 0.3617 22 6 6.5627 -5.4736 -0.5900 23 6 5.2343 -6.2222 -0.7925 24 1 5.0481 -6.4411 -1.8439 25 8 4.1726 -5.4539 -0.1884 26 6 2.2307 -3.6975 0.0797 27 1 -0.4850 0.8400 -0.0042 28 1 0.8294 -2.0048 2.0915 29 1 -0.6209 -2.4059 1.1230 30 1 1.0551 -4.2056 2.6815 31 1 -0.4148 -4.5989 1.7488 32 1 2.8521 -5.4023 2.0607 33 1 1.6127 -6.6181 1.6681 34 1 4.0392 -7.5490 1.8199 35 1 3.4508 -8.5536 0.4596 36 1 5.9447 -6.6240 1.9586 37 1 6.8393 -8.1161 1.5195 38 1 8.0885 -6.9793 -0.2062 39 1 7.9857 -5.7005 1.0428 40 1 7.0733 -5.3552 -1.5458 41 1 6.3758 -4.4968 -0.1439 42 1 2.5698 -3.9742 -0.9186 43 1 3.0783 -3.4654 0.7245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720870619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:00 Heat of formation + Delta-G solvation = -74.096277 kcal Electronic energy + Delta-G solvation = -21183.886328 eV Core-core repulsion = 18227.114165 eV Total energy + Delta-G solvation = -2956.772162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25277 -39.48031 -36.38904 -35.08197 -33.49072 -32.03965 -30.07368 -28.68736 -28.59138 -26.63408 -24.80343 -22.36591 -21.80072 -21.47519 -21.04019 -20.62344 -18.41403 -17.90864 -16.94665 -16.69998 -16.47055 -16.19341 -15.66670 -15.02544 -14.92650 -14.48504 -14.38631 -13.99955 -13.82851 -13.42105 -13.30601 -12.98533 -12.83759 -12.66623 -12.48879 -12.31745 -12.18371 -12.02665 -11.89545 -11.67337 -11.62802 -11.57062 -11.45324 -11.26505 -11.05101 -10.82817 -10.50955 -10.47799 -9.27482 -8.14142 -6.24465 1.38983 1.41080 1.48983 2.41639 2.92858 3.14171 3.19348 3.50639 3.61330 3.94599 3.98780 4.12976 4.18279 4.25085 4.31443 4.41246 4.42852 4.51793 4.57427 4.61153 4.69121 4.72276 4.77111 4.79182 4.81973 4.93226 5.01708 5.06984 5.13879 5.14417 5.18601 5.22454 5.29841 5.30303 5.33842 5.50313 5.59094 5.78863 5.87575 6.02178 6.17360 6.29752 6.41770 6.84721 7.42757 8.95485 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.005282 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.142433 B = 5299.324236 C = 6231.562637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.048 0.952 9 C 0.038 3.962 10 H -0.001 1.001 11 C -0.095 4.095 12 C 0.044 3.956 13 N -0.529 5.529 14 C 0.054 3.946 15 C 0.076 3.924 16 H 0.066 0.934 17 C -0.135 4.135 18 C -0.115 4.115 19 H 0.114 0.886 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.126 4.126 23 C 0.058 3.942 24 H 0.076 0.924 25 O -0.387 6.387 26 C 0.084 3.916 27 H 0.262 0.738 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.623 -17.976 2.316 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.066 0.934 9 C 0.019 3.981 10 H 0.017 0.983 11 C -0.133 4.133 12 C -0.084 4.084 13 N -0.254 5.254 14 C -0.074 4.074 15 C 0.019 3.981 16 H 0.084 0.916 17 C -0.173 4.173 18 C -0.133 4.133 19 H 0.132 0.868 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.164 4.164 23 C 0.000 4.000 24 H 0.094 0.906 25 O -0.307 6.307 26 C -0.044 4.044 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 11.134 -17.885 1.977 21.160 hybrid contribution 0.485 1.642 0.433 1.766 sum 11.620 -16.243 2.410 20.116 Atomic orbital electron populations 1.70093 1.07235 1.27381 1.50971 1.25759 0.95700 1.02395 0.94605 0.85660 0.78459 0.78984 0.78858 1.19605 1.20542 1.19680 1.21367 0.92689 0.91921 1.51237 0.93369 1.19552 0.92996 0.92406 0.93146 0.98297 1.22109 0.99396 0.93379 0.98457 1.22840 0.98085 0.94453 0.92996 1.64792 1.20906 1.11083 1.28575 1.22438 0.94394 0.95477 0.95068 1.23013 0.89683 0.88768 0.96685 0.91602 1.22975 0.95064 0.97993 1.01317 1.23270 0.95295 0.97906 0.96824 0.86756 1.22708 0.95733 0.99995 0.96662 1.22498 0.97448 0.97890 0.97679 1.22222 0.94203 0.99112 1.00814 1.23770 0.87900 0.91489 0.96822 0.90604 1.89294 1.30217 1.31565 1.79595 1.22862 0.93709 0.90061 0.97750 0.92952 0.94937 0.94215 0.93978 0.89997 0.95382 0.87668 0.90226 0.88555 0.92840 0.89251 0.89738 0.91592 0.90205 0.93112 0.92282 0.95966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.54 12.61 21.45 0.27 -55.27 16 2 C 0.01 0.84 5.34 84.66 0.45 1.29 16 3 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.53 -31.52 8.40 25.60 0.22 -31.31 16 8 H 0.05 2.83 7.78 -2.91 -0.02 2.81 16 9 C 0.04 2.10 2.93 -10.34 -0.03 2.07 16 10 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 11 C -0.09 -4.78 5.65 31.47 0.18 -4.60 16 12 C 0.04 1.76 6.70 86.45 0.58 2.34 16 13 N -0.53 -21.10 5.34 -882.51 -4.72 -25.81 16 14 C 0.05 1.69 4.57 86.30 0.39 2.08 16 15 C 0.08 2.13 3.22 31.08 0.10 2.23 16 16 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 17 C -0.14 -2.60 6.16 31.51 0.19 -2.41 16 18 C -0.11 -2.06 3.96 -9.00 -0.04 -2.10 16 19 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 20 C -0.11 -1.95 6.29 32.11 0.20 -1.75 16 21 C -0.12 -2.06 6.84 31.96 0.22 -1.84 16 22 C -0.13 -2.91 6.58 31.28 0.21 -2.70 16 23 C 0.06 1.42 4.23 31.66 0.13 1.55 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 O -0.39 -12.81 7.99 -148.98 -1.19 -14.01 16 26 C 0.08 3.94 4.25 86.61 0.37 4.30 16 27 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.03 1.72 7.84 -2.39 -0.02 1.70 16 29 H 0.04 2.10 8.11 -2.39 -0.02 2.08 16 30 H 0.04 1.55 7.67 -2.39 -0.02 1.53 16 31 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.03 0.93 7.98 -2.39 -0.02 0.91 16 33 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.08 1.49 7.12 -2.39 -0.02 1.47 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.11 7.59 -2.39 -0.02 1.10 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 1.47 7.92 -2.39 -0.02 1.45 16 42 H 0.06 2.84 7.22 -2.39 -0.02 2.82 16 43 H 0.02 1.10 7.54 -2.39 -0.02 1.08 16 Total: -1.00 -66.70 326.57 0.52 -66.18 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.95 Total: 12.27 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 3.18 Total: -30.83 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -4.45 Total: -81.09 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -1.19 Total: -14.01 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -66.70 0.52 -66.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720870619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.915 kcal (2) G-P(sol) polarization free energy of solvation -66.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds