Wall clock time and date at job start Mon Mar 30 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00349 * 2 1 4 4 H 1.48498 * 109.47127 * 270.00435 * 3 2 1 5 5 H 1.48504 * 109.46897 * 29.99889 * 3 2 1 6 6 H 1.48495 * 109.47380 * 149.99612 * 3 2 1 7 7 C 1.37879 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00043 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00071 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.87387 * 62.39047 * 9 7 2 11 11 C 1.55139 * 110.98894 * 298.54740 * 9 7 2 12 12 C 1.54324 * 103.01595 * 206.25421 * 11 9 7 13 13 N 1.47433 * 107.23420 * 22.28626 * 12 11 9 14 14 C 1.46895 * 110.99944 * 123.25729 * 13 12 11 15 15 C 1.53000 * 109.47205 * 69.87559 * 14 13 12 16 16 H 1.09004 * 110.00625 * 306.29772 * 15 14 13 17 17 C 1.56177 * 109.98836 * 184.99864 * 15 14 13 18 18 C 1.52723 * 100.42802 * 218.04270 * 17 15 14 19 19 H 1.08999 * 111.80020 * 282.01915 * 18 17 15 20 20 C 1.51673 * 120.42219 * 147.76541 * 18 17 15 21 21 C 1.55569 * 104.90361 * 221.48400 * 20 18 17 22 22 C 1.56233 * 105.99675 * 7.09758 * 21 20 18 23 23 C 1.50007 * 101.88992 * 23.75216 * 22 21 20 24 24 H 1.08997 * 106.75504 * 64.86115 * 23 22 21 25 25 O 1.38134 * 130.83368 * 195.02571 * 23 22 21 26 26 C 1.47844 * 108.56908 * 0.98693 * 13 12 11 27 27 H 0.97001 * 119.99864 * 0.02562 * 1 2 3 28 28 H 1.09006 * 110.70571 * 87.87326 * 11 9 7 29 29 H 1.08997 * 110.85727 * 324.70479 * 11 9 7 30 30 H 1.09003 * 109.88429 * 262.87729 * 12 11 9 31 31 H 1.09007 * 110.01997 * 141.77191 * 12 11 9 32 32 H 1.08997 * 109.47041 * 309.86912 * 14 13 12 33 33 H 1.09011 * 109.46962 * 189.87035 * 14 13 12 34 34 H 1.09003 * 111.22068 * 335.83873 * 17 15 14 35 35 H 1.09000 * 111.22171 * 100.24695 * 17 15 14 36 36 H 1.08997 * 110.35731 * 340.34294 * 20 18 17 37 37 H 1.08997 * 110.35191 * 102.52832 * 20 18 17 38 38 H 1.09002 * 110.14000 * 126.22341 * 21 20 18 39 39 H 1.08997 * 110.14746 * 247.95897 * 21 20 18 40 40 H 1.08993 * 110.94559 * 141.90406 * 22 21 20 41 41 H 1.08998 * 110.94149 * 265.56637 * 22 21 20 42 42 H 1.09004 * 110.37421 * 94.73674 * 26 13 12 43 43 H 1.09001 * 110.37400 * 217.07706 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8996 -0.7219 0.9037 11 6 4.0678 -0.5022 -1.2712 12 6 5.4513 -1.1622 -1.4491 13 7 5.4131 -2.4547 -0.7407 14 6 5.7433 -3.5621 -1.6476 15 6 7.2253 -3.4907 -2.0212 16 1 7.4631 -2.5029 -2.4162 17 6 7.5614 -4.5853 -3.0833 18 6 8.9473 -5.0157 -2.6075 19 1 9.7164 -4.3020 -2.9028 20 6 9.4108 -6.4485 -2.7885 21 6 10.1375 -6.8048 -1.4599 22 6 9.8925 -5.5982 -0.4982 23 6 8.6383 -5.0012 -1.0646 24 1 7.8505 -5.7430 -0.9342 25 8 8.0477 -3.7707 -0.8520 26 6 4.0665 -2.6317 -0.1566 27 1 -0.4850 0.8401 -0.0004 28 1 4.1704 0.5714 -1.1124 29 1 3.4309 -0.7039 -2.1325 30 1 6.2240 -0.5257 -1.0180 31 1 5.6536 -1.3254 -2.5078 32 1 5.1369 -3.4858 -2.5500 33 1 5.5390 -4.5111 -1.1516 34 1 6.8531 -5.4125 -3.0350 35 1 7.6025 -4.1619 -4.0868 36 1 8.5559 -7.1071 -2.9414 37 1 10.0995 -6.5207 -3.6302 38 1 9.7163 -7.7156 -1.0343 39 1 11.2052 -6.9319 -1.6384 40 1 9.7337 -5.9408 0.5242 41 1 10.7184 -4.8884 -0.5453 42 1 3.4341 -3.2109 -0.8294 43 1 4.1357 -3.1205 0.8153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720870622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:09 Heat of formation + Delta-G solvation = -29.420746 kcal Electronic energy + Delta-G solvation = -20765.224285 eV Core-core repulsion = 17810.389399 eV Total energy + Delta-G solvation = -2954.834886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90185 -38.25742 -36.08544 -33.35526 -32.22457 -30.92958 -28.44816 -28.06922 -27.82146 -24.84621 -23.43372 -21.60365 -20.87389 -20.34489 -19.63704 -19.39069 -17.34071 -16.76364 -15.85412 -15.38154 -15.18712 -14.96388 -14.57467 -13.92395 -13.87718 -13.20506 -12.93762 -12.72215 -12.57058 -12.55110 -12.29718 -11.99641 -11.83509 -11.52132 -11.43018 -11.09276 -10.91538 -10.83977 -10.77551 -10.63319 -10.42293 -10.26104 -9.83860 -9.78495 -9.46845 -9.21659 -9.02105 -8.54727 -7.68262 -6.07485 -4.06864 3.29294 3.29751 3.39353 3.42823 4.24519 4.35072 4.43057 4.50006 4.56784 4.88600 4.92061 4.94766 5.15956 5.18858 5.23101 5.25589 5.38155 5.38762 5.48597 5.55434 5.59194 5.67220 5.70861 5.75245 5.80378 5.87643 5.95894 5.97137 6.07687 6.12472 6.22248 6.29253 6.32979 6.56526 6.77665 6.85863 7.02654 7.19912 7.48028 7.53054 7.70104 7.82938 8.52032 8.95280 9.55459 11.05678 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.048932 B = 0.003824 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.086797 B = 7320.479300 C = 7379.195295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.072 3.928 3 Si 0.883 3.117 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.012 3.988 10 H 0.040 0.960 11 C -0.150 4.150 12 C 0.043 3.957 13 N -0.525 5.525 14 C 0.042 3.958 15 C 0.090 3.910 16 H 0.087 0.913 17 C -0.139 4.139 18 C -0.151 4.151 19 H 0.088 0.912 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.101 4.101 23 C 0.066 3.934 24 H 0.035 0.965 25 O -0.335 6.335 26 C 0.058 3.942 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.786 -11.330 -6.710 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.008 4.008 10 H 0.058 0.942 11 C -0.188 4.188 12 C -0.084 4.084 13 N -0.249 5.249 14 C -0.087 4.087 15 C 0.033 3.967 16 H 0.105 0.895 17 C -0.177 4.177 18 C -0.170 4.170 19 H 0.106 0.894 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.139 4.139 23 C 0.007 3.993 24 H 0.053 0.947 25 O -0.254 6.254 26 C -0.069 4.069 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.998 -11.108 -6.134 23.684 hybrid contribution -0.363 0.856 -0.969 1.342 sum 19.635 -10.253 -7.103 23.262 Atomic orbital electron populations 1.69902 1.06306 1.26957 1.50869 1.24980 0.94649 0.99047 0.94324 0.86881 0.80108 0.83542 0.78314 1.20482 1.22156 1.18809 1.20927 0.88435 0.94513 1.50998 0.90835 1.20250 0.96306 0.91013 0.93189 0.94186 1.23210 0.94836 0.99112 1.01663 1.22823 0.98451 0.91412 0.95751 1.63583 1.29351 1.00876 1.31102 1.22568 0.94073 0.96264 0.95770 1.23752 0.90710 0.98476 0.83809 0.89475 1.22780 0.96566 0.99276 0.99104 1.23207 0.97225 0.97793 0.98761 0.89364 1.21694 1.00264 0.95330 0.97516 1.22808 1.00707 0.97656 0.94467 1.21633 0.96092 0.96911 0.99265 1.21883 0.95918 0.87936 0.93600 0.94696 1.87990 1.61880 1.35497 1.40004 1.22990 0.86086 0.99496 0.98291 0.92665 0.92898 0.91548 0.91602 0.94093 0.93737 0.90832 0.90282 0.90194 0.91387 0.91546 0.91281 0.91158 0.90713 0.90855 0.94024 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.88 22.07 24.53 -169.99 -4.17 17.90 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.38 6.47 56.52 0.37 -6.01 16 7 C -0.51 -14.45 9.13 -34.44 -0.31 -14.77 16 8 H 0.07 2.24 8.03 -52.49 -0.42 1.82 16 9 C 0.01 0.29 2.41 -89.63 -0.22 0.07 16 10 H 0.04 1.01 7.42 -51.93 -0.39 0.62 16 11 C -0.15 -3.26 5.09 -24.91 -0.13 -3.39 16 12 C 0.04 0.80 6.13 -2.84 -0.02 0.78 16 13 N -0.53 -9.88 5.15 -231.25 -1.19 -11.07 16 14 C 0.04 0.65 4.15 -3.83 -0.02 0.64 16 15 C 0.09 1.21 3.50 -25.03 -0.09 1.12 16 16 H 0.09 1.19 7.07 -51.93 -0.37 0.82 16 17 C -0.14 -1.43 6.12 -25.17 -0.15 -1.59 16 18 C -0.15 -1.48 3.46 -89.06 -0.31 -1.78 16 19 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.11 -0.86 6.48 -26.04 -0.17 -1.03 16 21 C -0.12 -0.87 6.90 -23.63 -0.16 -1.03 16 22 C -0.10 -0.95 6.74 -26.48 -0.18 -1.13 16 23 C 0.07 0.79 3.51 -25.84 -0.09 0.70 16 24 H 0.04 0.44 7.68 -51.93 -0.40 0.04 16 25 O -0.34 -5.14 11.06 -26.95 -0.30 -5.44 16 26 C 0.06 1.23 6.12 -2.30 -0.01 1.21 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.05 1.16 5.12 -51.93 -0.27 0.89 16 29 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.66 6.96 -51.92 -0.36 0.30 16 32 H 0.04 0.67 7.96 -51.93 -0.41 0.25 16 33 H 0.07 1.13 8.07 -51.92 -0.42 0.71 16 34 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.04 0.88 7.70 -51.93 -0.40 0.48 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -30.87 322.24 -9.64 -40.51 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.66 Total: -1.56 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.95 Total: -18.21 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.42 Total: -38.06 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.30 Total: -5.44 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.17 Total: 17.90 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.87 -9.64 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720870622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.092 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds