Wall clock time and date at job start Mon Mar 30 2020 07:43:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86804 * 120.00349 * 2 1
4 4 H 1.48498 * 109.47127 * 270.00435 * 3 2 1
5 5 H 1.48504 * 109.46897 * 29.99889 * 3 2 1
6 6 H 1.48495 * 109.47380 * 149.99612 * 3 2 1
7 7 C 1.37879 * 119.99976 * 179.97438 * 2 1 3
8 8 H 1.07994 * 120.00043 * 0.02562 * 7 2 1
9 9 C 1.50706 * 120.00071 * 180.02562 * 7 2 1
10 10 H 1.09004 * 110.87387 * 62.39047 * 9 7 2
11 11 C 1.55139 * 110.98894 * 298.54740 * 9 7 2
12 12 C 1.54324 * 103.01595 * 206.25421 * 11 9 7
13 13 N 1.47433 * 107.23420 * 22.28626 * 12 11 9
14 14 C 1.46895 * 110.99944 * 123.25729 * 13 12 11
15 15 C 1.53000 * 109.47205 * 69.87559 * 14 13 12
16 16 H 1.09004 * 110.00625 * 306.29772 * 15 14 13
17 17 C 1.56177 * 109.98836 * 184.99864 * 15 14 13
18 18 C 1.52723 * 100.42802 * 218.04270 * 17 15 14
19 19 H 1.08999 * 111.80020 * 282.01915 * 18 17 15
20 20 C 1.51673 * 120.42219 * 147.76541 * 18 17 15
21 21 C 1.55569 * 104.90361 * 221.48400 * 20 18 17
22 22 C 1.56233 * 105.99675 * 7.09758 * 21 20 18
23 23 C 1.50007 * 101.88992 * 23.75216 * 22 21 20
24 24 H 1.08997 * 106.75504 * 64.86115 * 23 22 21
25 25 O 1.38134 * 130.83368 * 195.02571 * 23 22 21
26 26 C 1.47844 * 108.56908 * 0.98693 * 13 12 11
27 27 H 0.97001 * 119.99864 * 0.02562 * 1 2 3
28 28 H 1.09006 * 110.70571 * 87.87326 * 11 9 7
29 29 H 1.08997 * 110.85727 * 324.70479 * 11 9 7
30 30 H 1.09003 * 109.88429 * 262.87729 * 12 11 9
31 31 H 1.09007 * 110.01997 * 141.77191 * 12 11 9
32 32 H 1.08997 * 109.47041 * 309.86912 * 14 13 12
33 33 H 1.09011 * 109.46962 * 189.87035 * 14 13 12
34 34 H 1.09003 * 111.22068 * 335.83873 * 17 15 14
35 35 H 1.09000 * 111.22171 * 100.24695 * 17 15 14
36 36 H 1.08997 * 110.35731 * 340.34294 * 20 18 17
37 37 H 1.08997 * 110.35191 * 102.52832 * 20 18 17
38 38 H 1.09002 * 110.14000 * 126.22341 * 21 20 18
39 39 H 1.08997 * 110.14746 * 247.95897 * 21 20 18
40 40 H 1.08993 * 110.94559 * 141.90406 * 22 21 20
41 41 H 1.08998 * 110.94149 * 265.56637 * 22 21 20
42 42 H 1.09004 * 110.37421 * 94.73674 * 26 13 12
43 43 H 1.09001 * 110.37400 * 217.07706 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5116 -1.1941 0.0011
10 1 3.8996 -0.7219 0.9037
11 6 4.0678 -0.5022 -1.2712
12 6 5.4513 -1.1622 -1.4491
13 7 5.4131 -2.4547 -0.7407
14 6 5.7433 -3.5621 -1.6476
15 6 7.2253 -3.4907 -2.0212
16 1 7.4631 -2.5029 -2.4162
17 6 7.5614 -4.5853 -3.0833
18 6 8.9473 -5.0157 -2.6075
19 1 9.7164 -4.3020 -2.9028
20 6 9.4108 -6.4485 -2.7885
21 6 10.1375 -6.8048 -1.4599
22 6 9.8925 -5.5982 -0.4982
23 6 8.6383 -5.0012 -1.0646
24 1 7.8505 -5.7430 -0.9342
25 8 8.0477 -3.7707 -0.8520
26 6 4.0665 -2.6317 -0.1566
27 1 -0.4850 0.8401 -0.0004
28 1 4.1704 0.5714 -1.1124
29 1 3.4309 -0.7039 -2.1325
30 1 6.2240 -0.5257 -1.0180
31 1 5.6536 -1.3254 -2.5078
32 1 5.1369 -3.4858 -2.5500
33 1 5.5390 -4.5111 -1.1516
34 1 6.8531 -5.4125 -3.0350
35 1 7.6025 -4.1619 -4.0868
36 1 8.5559 -7.1071 -2.9414
37 1 10.0995 -6.5207 -3.6302
38 1 9.7163 -7.7156 -1.0343
39 1 11.2052 -6.9319 -1.6384
40 1 9.7337 -5.9408 0.5242
41 1 10.7184 -4.8884 -0.5453
42 1 3.4341 -3.2109 -0.8294
43 1 4.1357 -3.1205 0.8153
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000720870622.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:43:09
Heat of formation + Delta-G solvation = -29.420746 kcal
Electronic energy + Delta-G solvation = -20765.224285 eV
Core-core repulsion = 17810.389399 eV
Total energy + Delta-G solvation = -2954.834886 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.90185 -38.25742 -36.08544 -33.35526 -32.22457 -30.92958 -28.44816 -28.06922
-27.82146 -24.84621 -23.43372 -21.60365 -20.87389 -20.34489 -19.63704 -19.39069
-17.34071 -16.76364 -15.85412 -15.38154 -15.18712 -14.96388 -14.57467 -13.92395
-13.87718 -13.20506 -12.93762 -12.72215 -12.57058 -12.55110 -12.29718 -11.99641
-11.83509 -11.52132 -11.43018 -11.09276 -10.91538 -10.83977 -10.77551 -10.63319
-10.42293 -10.26104 -9.83860 -9.78495 -9.46845 -9.21659 -9.02105 -8.54727
-7.68262 -6.07485 -4.06864 3.29294 3.29751 3.39353 3.42823 4.24519
4.35072 4.43057 4.50006 4.56784 4.88600 4.92061 4.94766 5.15956
5.18858 5.23101 5.25589 5.38155 5.38762 5.48597 5.55434 5.59194
5.67220 5.70861 5.75245 5.80378 5.87643 5.95894 5.97137 6.07687
6.12472 6.22248 6.29253 6.32979 6.56526 6.77665 6.85863 7.02654
7.19912 7.48028 7.53054 7.70104 7.82938 8.52032 8.95280 9.55459
11.05678
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.048932 B = 0.003824 C = 0.003794
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 572.086797 B = 7320.479300 C = 7379.195295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.072 3.928
3 Si 0.883 3.117
4 H -0.279 1.279
5 H -0.294 1.294
6 H -0.263 1.263
7 C -0.511 4.511
8 H 0.074 0.926
9 C 0.012 3.988
10 H 0.040 0.960
11 C -0.150 4.150
12 C 0.043 3.957
13 N -0.525 5.525
14 C 0.042 3.958
15 C 0.090 3.910
16 H 0.087 0.913
17 C -0.139 4.139
18 C -0.151 4.151
19 H 0.088 0.912
20 C -0.110 4.110
21 C -0.119 4.119
22 C -0.101 4.101
23 C 0.066 3.934
24 H 0.035 0.965
25 O -0.335 6.335
26 C 0.058 3.942
27 H 0.264 0.736
28 H 0.053 0.947
29 H 0.066 0.934
30 H 0.066 0.934
31 H 0.041 0.959
32 H 0.045 0.955
33 H 0.073 0.927
34 H 0.079 0.921
35 H 0.079 0.921
36 H 0.067 0.933
37 H 0.066 0.934
38 H 0.068 0.932
39 H 0.070 0.930
40 H 0.074 0.926
41 H 0.073 0.927
42 H 0.041 0.959
43 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.786 -11.330 -6.710 23.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.130 4.130
3 Si 0.712 3.288
4 H -0.205 1.205
5 H -0.222 1.222
6 H -0.188 1.188
7 C -0.549 4.549
8 H 0.092 0.908
9 C -0.008 4.008
10 H 0.058 0.942
11 C -0.188 4.188
12 C -0.084 4.084
13 N -0.249 5.249
14 C -0.087 4.087
15 C 0.033 3.967
16 H 0.105 0.895
17 C -0.177 4.177
18 C -0.170 4.170
19 H 0.106 0.894
20 C -0.148 4.148
21 C -0.156 4.156
22 C -0.139 4.139
23 C 0.007 3.993
24 H 0.053 0.947
25 O -0.254 6.254
26 C -0.069 4.069
27 H 0.073 0.927
28 H 0.071 0.929
29 H 0.085 0.915
30 H 0.084 0.916
31 H 0.059 0.941
32 H 0.063 0.937
33 H 0.092 0.908
34 H 0.097 0.903
35 H 0.098 0.902
36 H 0.086 0.914
37 H 0.085 0.915
38 H 0.087 0.913
39 H 0.088 0.912
40 H 0.093 0.907
41 H 0.091 0.909
42 H 0.060 0.940
43 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 19.998 -11.108 -6.134 23.684
hybrid contribution -0.363 0.856 -0.969 1.342
sum 19.635 -10.253 -7.103 23.262
Atomic orbital electron populations
1.69902 1.06306 1.26957 1.50869 1.24980 0.94649 0.99047 0.94324
0.86881 0.80108 0.83542 0.78314 1.20482 1.22156 1.18809 1.20927
0.88435 0.94513 1.50998 0.90835 1.20250 0.96306 0.91013 0.93189
0.94186 1.23210 0.94836 0.99112 1.01663 1.22823 0.98451 0.91412
0.95751 1.63583 1.29351 1.00876 1.31102 1.22568 0.94073 0.96264
0.95770 1.23752 0.90710 0.98476 0.83809 0.89475 1.22780 0.96566
0.99276 0.99104 1.23207 0.97225 0.97793 0.98761 0.89364 1.21694
1.00264 0.95330 0.97516 1.22808 1.00707 0.97656 0.94467 1.21633
0.96092 0.96911 0.99265 1.21883 0.95918 0.87936 0.93600 0.94696
1.87990 1.61880 1.35497 1.40004 1.22990 0.86086 0.99496 0.98291
0.92665 0.92898 0.91548 0.91602 0.94093 0.93737 0.90832 0.90282
0.90194 0.91387 0.91546 0.91281 0.91158 0.90713 0.90855 0.94024
0.91451
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16
2 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16
3 Si 0.88 22.07 24.53 -169.99 -4.17 17.90 16
4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
6 H -0.26 -6.38 6.47 56.52 0.37 -6.01 16
7 C -0.51 -14.45 9.13 -34.44 -0.31 -14.77 16
8 H 0.07 2.24 8.03 -52.49 -0.42 1.82 16
9 C 0.01 0.29 2.41 -89.63 -0.22 0.07 16
10 H 0.04 1.01 7.42 -51.93 -0.39 0.62 16
11 C -0.15 -3.26 5.09 -24.91 -0.13 -3.39 16
12 C 0.04 0.80 6.13 -2.84 -0.02 0.78 16
13 N -0.53 -9.88 5.15 -231.25 -1.19 -11.07 16
14 C 0.04 0.65 4.15 -3.83 -0.02 0.64 16
15 C 0.09 1.21 3.50 -25.03 -0.09 1.12 16
16 H 0.09 1.19 7.07 -51.93 -0.37 0.82 16
17 C -0.14 -1.43 6.12 -25.17 -0.15 -1.59 16
18 C -0.15 -1.48 3.46 -89.06 -0.31 -1.78 16
19 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
20 C -0.11 -0.86 6.48 -26.04 -0.17 -1.03 16
21 C -0.12 -0.87 6.90 -23.63 -0.16 -1.03 16
22 C -0.10 -0.95 6.74 -26.48 -0.18 -1.13 16
23 C 0.07 0.79 3.51 -25.84 -0.09 0.70 16
24 H 0.04 0.44 7.68 -51.93 -0.40 0.04 16
25 O -0.34 -5.14 11.06 -26.95 -0.30 -5.44 16
26 C 0.06 1.23 6.12 -2.30 -0.01 1.21 16
27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
28 H 0.05 1.16 5.12 -51.93 -0.27 0.89 16
29 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16
30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
31 H 0.04 0.66 6.96 -51.92 -0.36 0.30 16
32 H 0.04 0.67 7.96 -51.93 -0.41 0.25 16
33 H 0.07 1.13 8.07 -51.92 -0.42 0.71 16
34 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16
35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
36 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16
37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
42 H 0.04 0.88 7.70 -51.93 -0.40 0.48 16
43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16
LS Contribution 322.24 15.07 4.86 4.86
Total: -1.00 -30.87 322.24 -9.64 -40.51
By element:
Atomic # 1 Polarization: 6.09 SS G_CDS: -7.66 Total: -1.56 kcal
Atomic # 6 Polarization: -16.26 SS G_CDS: -1.95 Total: -18.21 kcal
Atomic # 7 Polarization: -37.64 SS G_CDS: -0.42 Total: -38.06 kcal
Atomic # 8 Polarization: -5.14 SS G_CDS: -0.30 Total: -5.44 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -4.17 Total: 17.90 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -30.87 -9.64 -40.51 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000720870622.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.092 kcal
(2) G-P(sol) polarization free energy of solvation -30.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds