Wall clock time and date at job start Mon Mar 30 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00349 * 2 1 4 4 H 1.48498 * 109.47127 * 270.00435 * 3 2 1 5 5 H 1.48504 * 109.46897 * 29.99889 * 3 2 1 6 6 H 1.48495 * 109.47380 * 149.99612 * 3 2 1 7 7 C 1.37879 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00043 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00071 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.87387 * 62.39047 * 9 7 2 11 11 C 1.55139 * 110.98894 * 298.54740 * 9 7 2 12 12 C 1.54324 * 103.01595 * 206.25421 * 11 9 7 13 13 N 1.47433 * 107.23420 * 22.28626 * 12 11 9 14 14 C 1.46895 * 110.99944 * 123.25729 * 13 12 11 15 15 C 1.53000 * 109.47205 * 69.87559 * 14 13 12 16 16 H 1.09004 * 110.00625 * 306.29772 * 15 14 13 17 17 C 1.56177 * 109.98836 * 184.99864 * 15 14 13 18 18 C 1.52723 * 100.42802 * 218.04270 * 17 15 14 19 19 H 1.08999 * 111.80020 * 282.01915 * 18 17 15 20 20 C 1.51673 * 120.42219 * 147.76541 * 18 17 15 21 21 C 1.55569 * 104.90361 * 221.48400 * 20 18 17 22 22 C 1.56233 * 105.99675 * 7.09758 * 21 20 18 23 23 C 1.50007 * 101.88992 * 23.75216 * 22 21 20 24 24 H 1.08997 * 106.75504 * 64.86115 * 23 22 21 25 25 O 1.38134 * 130.83368 * 195.02571 * 23 22 21 26 26 C 1.47844 * 108.56908 * 0.98693 * 13 12 11 27 27 H 0.97001 * 119.99864 * 0.02562 * 1 2 3 28 28 H 1.09006 * 110.70571 * 87.87326 * 11 9 7 29 29 H 1.08997 * 110.85727 * 324.70479 * 11 9 7 30 30 H 1.09003 * 109.88429 * 262.87729 * 12 11 9 31 31 H 1.09007 * 110.01997 * 141.77191 * 12 11 9 32 32 H 1.08997 * 109.47041 * 309.86912 * 14 13 12 33 33 H 1.09011 * 109.46962 * 189.87035 * 14 13 12 34 34 H 1.09003 * 111.22068 * 335.83873 * 17 15 14 35 35 H 1.09000 * 111.22171 * 100.24695 * 17 15 14 36 36 H 1.08997 * 110.35731 * 340.34294 * 20 18 17 37 37 H 1.08997 * 110.35191 * 102.52832 * 20 18 17 38 38 H 1.09002 * 110.14000 * 126.22341 * 21 20 18 39 39 H 1.08997 * 110.14746 * 247.95897 * 21 20 18 40 40 H 1.08993 * 110.94559 * 141.90406 * 22 21 20 41 41 H 1.08998 * 110.94149 * 265.56637 * 22 21 20 42 42 H 1.09004 * 110.37421 * 94.73674 * 26 13 12 43 43 H 1.09001 * 110.37400 * 217.07706 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8996 -0.7219 0.9037 11 6 4.0678 -0.5022 -1.2712 12 6 5.4513 -1.1622 -1.4491 13 7 5.4131 -2.4547 -0.7407 14 6 5.7433 -3.5621 -1.6476 15 6 7.2253 -3.4907 -2.0212 16 1 7.4631 -2.5029 -2.4162 17 6 7.5614 -4.5853 -3.0833 18 6 8.9473 -5.0157 -2.6075 19 1 9.7164 -4.3020 -2.9028 20 6 9.4108 -6.4485 -2.7885 21 6 10.1375 -6.8048 -1.4599 22 6 9.8925 -5.5982 -0.4982 23 6 8.6383 -5.0012 -1.0646 24 1 7.8505 -5.7430 -0.9342 25 8 8.0477 -3.7707 -0.8520 26 6 4.0665 -2.6317 -0.1566 27 1 -0.4850 0.8401 -0.0004 28 1 4.1704 0.5714 -1.1124 29 1 3.4309 -0.7039 -2.1325 30 1 6.2240 -0.5257 -1.0180 31 1 5.6536 -1.3254 -2.5078 32 1 5.1369 -3.4858 -2.5500 33 1 5.5390 -4.5111 -1.1516 34 1 6.8531 -5.4125 -3.0350 35 1 7.6025 -4.1619 -4.0868 36 1 8.5559 -7.1071 -2.9414 37 1 10.0995 -6.5207 -3.6302 38 1 9.7163 -7.7156 -1.0343 39 1 11.2052 -6.9319 -1.6384 40 1 9.7337 -5.9408 0.5242 41 1 10.7184 -4.8884 -0.5453 42 1 3.4341 -3.2109 -0.8294 43 1 4.1357 -3.1205 0.8153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720870622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:09 Heat of formation + Delta-G solvation = -49.663444 kcal Electronic energy + Delta-G solvation = -20766.102075 eV Core-core repulsion = 17810.389399 eV Total energy + Delta-G solvation = -2955.712675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.80501 -39.81032 -36.97949 -35.18229 -33.65653 -32.32440 -30.15646 -29.18198 -28.65451 -26.37787 -24.93206 -22.67264 -21.98019 -21.40788 -21.16709 -20.59497 -18.82704 -18.28072 -17.08059 -16.89469 -16.38647 -16.00722 -15.80547 -15.48006 -15.00832 -14.73179 -14.40701 -14.27859 -13.75869 -13.58528 -13.37350 -13.23253 -13.07293 -12.77802 -12.74443 -12.52662 -12.31197 -12.14023 -11.91000 -11.66956 -11.58877 -11.47036 -11.37902 -11.30036 -11.13343 -11.07356 -10.74931 -10.21840 -9.17893 -8.32802 -6.37304 1.30469 1.35568 1.46322 2.32044 2.42348 3.01451 3.07485 3.50257 3.62503 3.72128 3.92821 3.96229 4.10093 4.11471 4.18361 4.31492 4.33932 4.40456 4.45470 4.50232 4.52372 4.58509 4.64996 4.73106 4.77426 4.83588 4.91712 4.97835 4.99476 5.05379 5.11332 5.13531 5.17025 5.26393 5.30689 5.35719 5.48549 5.54701 5.62997 6.00707 6.15605 6.27304 6.36536 6.68061 7.28765 8.83896 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.048932 B = 0.003824 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.086797 B = 7320.479300 C = 7379.195295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.015 3.985 3 Si 0.946 3.054 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.250 1.250 7 C -0.517 4.517 8 H 0.034 0.966 9 C 0.005 3.995 10 H 0.031 0.969 11 C -0.146 4.146 12 C 0.051 3.949 13 N -0.532 5.532 14 C 0.042 3.958 15 C 0.089 3.911 16 H 0.089 0.911 17 C -0.132 4.132 18 C -0.141 4.141 19 H 0.090 0.910 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.103 4.103 23 C 0.049 3.951 24 H 0.023 0.977 25 O -0.366 6.366 26 C 0.068 3.932 27 H 0.267 0.733 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.677 -11.342 -8.204 26.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.182 4.182 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.174 1.174 7 C -0.555 4.555 8 H 0.052 0.948 9 C -0.014 4.014 10 H 0.050 0.950 11 C -0.185 4.185 12 C -0.077 4.077 13 N -0.256 5.256 14 C -0.087 4.087 15 C 0.032 3.968 16 H 0.106 0.894 17 C -0.170 4.170 18 C -0.159 4.159 19 H 0.108 0.892 20 C -0.146 4.146 21 C -0.150 4.150 22 C -0.141 4.141 23 C -0.010 4.010 24 H 0.041 0.959 25 O -0.285 6.285 26 C -0.059 4.059 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 22.914 -11.144 -7.638 26.600 hybrid contribution -1.317 0.760 -0.454 1.587 sum 21.597 -10.384 -8.092 25.293 Atomic orbital electron populations 1.70044 1.08187 1.28133 1.52558 1.25844 0.95400 1.02983 0.93959 0.85860 0.79107 0.78607 0.79297 1.18671 1.22084 1.17362 1.21169 0.90839 0.93089 1.50400 0.94806 1.20171 0.93552 0.93510 0.94193 0.95039 1.23085 0.96542 0.99258 0.99598 1.22807 0.96402 0.90908 0.97581 1.63577 1.27210 1.02204 1.32611 1.22666 0.95909 0.94797 0.95302 1.23771 0.88927 0.99780 0.84316 0.89351 1.22764 0.96910 0.98400 0.98928 1.23188 0.96948 0.99191 0.96623 0.89153 1.21721 1.00740 0.93839 0.98291 1.22805 1.01822 0.96786 0.93632 1.21720 0.94973 0.97625 0.99751 1.22165 0.96469 0.86409 0.95955 0.95884 1.87941 1.62437 1.36961 1.41176 1.22766 0.87331 0.97462 0.98386 0.92434 0.92640 0.92509 0.90616 0.91310 0.92889 0.91240 0.89980 0.88292 0.91195 0.89900 0.90696 0.89458 0.90956 0.90644 0.94858 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.96 13.96 21.45 0.30 -59.67 16 2 C 0.02 0.91 5.46 84.66 0.46 1.37 16 3 Si 0.95 45.32 24.53 68.60 1.68 47.01 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.25 -11.32 6.47 99.48 0.64 -10.68 16 7 C -0.52 -30.11 9.13 25.60 0.23 -29.88 16 8 H 0.03 2.17 8.03 -2.91 -0.02 2.15 16 9 C 0.01 0.25 2.41 -10.15 -0.02 0.23 16 10 H 0.03 1.58 7.42 -2.39 -0.02 1.56 16 11 C -0.15 -6.15 5.09 31.78 0.16 -5.99 16 12 C 0.05 1.75 6.13 86.65 0.53 2.28 16 13 N -0.53 -19.35 5.15 -885.54 -4.56 -23.91 16 14 C 0.04 1.23 4.15 86.30 0.36 1.59 16 15 C 0.09 2.22 3.50 31.70 0.11 2.33 16 16 H 0.09 2.17 7.07 -2.39 -0.02 2.15 16 17 C -0.13 -2.37 6.12 31.61 0.19 -2.18 16 18 C -0.14 -2.39 3.46 -9.78 -0.03 -2.42 16 19 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 20 C -0.11 -1.36 6.48 31.04 0.20 -1.15 16 21 C -0.11 -1.35 6.90 32.60 0.23 -1.12 16 22 C -0.10 -1.76 6.74 30.76 0.21 -1.56 16 23 C 0.05 1.11 3.51 31.17 0.11 1.22 16 24 H 0.02 0.56 7.68 -2.39 -0.02 0.54 16 25 O -0.37 -10.80 11.06 -119.35 -1.32 -12.12 16 26 C 0.07 2.88 6.12 86.77 0.53 3.41 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.06 2.29 5.12 -2.38 -0.01 2.28 16 29 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.00 6.96 -2.38 -0.02 1.99 16 32 H 0.05 1.48 7.96 -2.39 -0.02 1.46 16 33 H 0.07 2.09 8.07 -2.38 -0.02 2.07 16 34 H 0.08 1.43 7.92 -2.39 -0.02 1.41 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.03 1.44 7.70 -2.39 -0.02 1.42 16 43 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -67.73 322.24 0.26 -67.47 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.89 Total: 13.11 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 3.27 Total: -31.88 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -4.26 Total: -83.58 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.32 Total: -12.12 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.68 Total: 47.01 kcal Total: -67.73 0.26 -67.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720870622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.802 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds