Wall clock time and date at job start Mon Mar 30 2020 07:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99739 * 2 1 4 4 H 1.48501 * 109.47155 * 269.99859 * 3 2 1 5 5 H 1.48495 * 109.47222 * 29.99538 * 3 2 1 6 6 H 1.48502 * 109.47345 * 149.99976 * 3 2 1 7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99769 * 173.06253 * 7 2 1 9 9 C 1.50693 * 119.99769 * 353.06567 * 7 2 1 10 10 C 1.53003 * 115.55171 * 84.96502 * 9 7 2 11 11 N 1.46900 * 109.47041 * 65.16672 * 10 9 7 12 12 C 1.46900 * 111.00030 * 174.70266 * 11 10 9 13 13 C 1.53003 * 109.47264 * 179.97438 * 12 11 10 14 14 H 1.08994 * 110.27029 * 57.90512 * 13 12 11 15 15 C 1.54943 * 110.30828 * 180.02562 * 13 12 11 16 16 C 1.55303 * 100.93788 * 155.35542 * 15 13 12 17 17 C 1.54377 * 102.44235 * 325.76736 * 16 15 13 18 18 H 1.09005 * 109.82973 * 261.94398 * 17 16 15 19 19 C 1.52994 * 109.83435 * 140.97191 * 17 16 15 20 20 C 1.53001 * 117.49787 * 248.62367 * 19 17 16 21 21 C 1.52994 * 117.50341 * 179.97438 * 19 17 16 22 22 O 1.43646 * 110.30627 * 295.71230 * 13 12 11 23 23 C 1.53008 * 117.49709 * 230.62943 * 9 7 2 24 24 C 1.53005 * 117.50145 * 299.28814 * 9 7 2 25 25 H 0.96995 * 120.00298 * 5.05020 * 1 2 3 26 26 H 1.08995 * 109.46947 * 305.16669 * 10 9 7 27 27 H 1.09000 * 109.46844 * 185.16130 * 10 9 7 28 28 H 1.00905 * 110.99777 * 298.65503 * 11 10 9 29 29 H 1.09002 * 109.46632 * 59.99721 * 12 11 10 30 30 H 1.09003 * 109.46749 * 300.00070 * 12 11 10 31 31 H 1.08997 * 111.12647 * 37.44054 * 15 13 12 32 32 H 1.08998 * 111.12470 * 273.27342 * 15 13 12 33 33 H 1.09006 * 110.84489 * 84.05827 * 16 15 13 34 34 H 1.09000 * 110.84871 * 207.47049 * 16 15 13 35 35 H 1.09002 * 115.55289 * 34.32700 * 19 17 16 36 36 H 1.08998 * 117.49664 * 359.97438 * 20 19 17 37 37 H 1.08997 * 117.49910 * 145.01943 * 20 19 17 38 38 H 1.08998 * 117.50279 * 214.98090 * 21 19 17 39 39 H 1.09010 * 117.49884 * 0.02562 * 21 19 17 40 40 H 1.08994 * 117.49849 * 215.00516 * 23 9 7 41 41 H 1.08999 * 117.49377 * 0.03058 * 23 9 7 42 42 H 1.08999 * 117.49357 * 359.97438 * 24 9 7 43 43 H 1.08997 * 117.49622 * 145.00005 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0786 -1.1975 -0.1124 9 6 1.2593 -2.4942 0.1587 10 6 0.6847 -3.0865 -1.1297 11 7 1.7840 -3.4625 -2.0287 12 6 1.2755 -4.1497 -3.2233 13 6 2.4468 -4.5242 -4.1336 14 1 3.1553 -5.1552 -3.5971 15 6 1.9316 -5.2506 -5.4016 16 6 3.0822 -4.9511 -6.4008 17 6 3.5324 -3.5370 -5.9756 18 1 3.0720 -2.7917 -6.6243 19 6 5.0563 -3.4301 -6.0595 20 6 5.8288 -3.3016 -4.7451 21 6 5.6930 -2.0933 -5.6746 22 8 3.0991 -3.3401 -4.6193 23 6 1.7625 -3.4721 1.2226 24 6 0.4608 -2.6986 1.4477 25 1 -0.4850 0.8367 -0.0739 26 1 0.0520 -2.3461 -1.6193 27 1 0.0923 -3.9698 -0.8910 28 1 2.3353 -2.6564 -2.2825 29 1 0.5950 -3.4890 -3.7605 30 1 0.7441 -5.0532 -2.9241 31 1 0.9909 -4.8209 -5.7456 32 1 1.8316 -6.3219 -5.2272 33 1 3.8945 -5.6685 -6.2833 34 1 2.7143 -4.9490 -7.4268 35 1 5.5236 -3.9965 -6.8650 36 1 5.2514 -3.2928 -3.8207 37 1 6.8047 -3.7836 -4.6857 38 1 6.5795 -1.7806 -6.2264 39 1 5.0262 -1.2899 -5.3611 40 1 1.6841 -4.5371 1.0046 41 1 2.6323 -3.1746 1.8083 42 1 0.4749 -1.8928 2.1815 43 1 -0.4739 -3.2549 1.3778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722332255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:03 Heat of formation + Delta-G solvation = -4.768767 kcal Electronic energy + Delta-G solvation = -20666.364630 eV Core-core repulsion = 17712.598734 eV Total energy + Delta-G solvation = -2953.765896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.77980 -36.96187 -36.31450 -34.02052 -32.09018 -31.83457 -29.72876 -26.20373 -25.19912 -23.35050 -22.27620 -21.60865 -21.24320 -20.83863 -19.79038 -18.93389 -16.98812 -16.09617 -15.68556 -15.22406 -14.71474 -14.64348 -14.52523 -13.80126 -13.66173 -13.25227 -12.81675 -12.57297 -12.45351 -11.91837 -11.59707 -11.54358 -11.30647 -11.20581 -11.11687 -10.90377 -10.85936 -10.80263 -10.70876 -10.35553 -10.15749 -10.05300 -9.93702 -9.36538 -9.26351 -8.66894 -8.34568 -7.98644 -7.38321 -5.95305 -4.00443 3.33784 3.40628 3.45128 3.81549 3.89018 4.46753 4.50772 4.64609 4.68393 4.96446 5.06031 5.11936 5.23618 5.33546 5.42265 5.43287 5.53484 5.60290 5.65812 5.72906 5.76898 5.78611 5.91325 5.99279 6.05086 6.14394 6.24085 6.27947 6.37405 6.45383 6.55592 6.66054 6.91555 6.92702 7.00272 7.23906 7.27254 7.60375 7.64400 7.96158 8.09877 8.44009 8.58464 9.02634 9.64767 11.12807 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.005551 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.346143 B = 5043.046308 C = 5984.679986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.070 3.930 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.490 4.490 8 H 0.060 0.940 9 C 0.051 3.949 10 C 0.106 3.894 11 N -0.678 5.678 12 C 0.061 3.939 13 C 0.087 3.913 14 H 0.076 0.924 15 C -0.152 4.152 16 C -0.146 4.146 17 C 0.109 3.891 18 H 0.079 0.921 19 C -0.175 4.175 20 C -0.165 4.165 21 C -0.176 4.176 22 O -0.364 6.364 23 C -0.200 4.200 24 C -0.163 4.163 25 H 0.258 0.742 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.355 0.645 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.592 -9.409 -12.957 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.051 3.949 10 C -0.023 4.023 11 N -0.310 5.310 12 C -0.069 4.069 13 C 0.029 3.971 14 H 0.094 0.906 15 C -0.190 4.190 16 C -0.184 4.184 17 C 0.051 3.949 18 H 0.097 0.903 19 C -0.193 4.193 20 C -0.202 4.202 21 C -0.213 4.213 22 O -0.283 6.283 23 C -0.238 4.238 24 C -0.201 4.201 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.174 0.826 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.591 -9.664 -12.426 16.705 hybrid contribution -0.057 1.489 -0.691 1.643 sum 5.534 -8.174 -13.117 16.416 Atomic orbital electron populations 1.69993 1.05867 1.26485 1.49566 1.24992 0.94756 0.98787 0.94739 0.86682 0.80051 0.83761 0.78099 1.20737 1.21347 1.19804 1.20464 0.93137 0.88829 1.50360 0.92192 1.18730 0.97236 0.93341 0.85627 1.21425 0.91104 0.95755 0.94040 1.60454 1.23709 1.32922 1.13951 1.22037 0.94375 0.99023 0.91466 1.23043 0.94173 0.86380 0.93494 0.90609 1.23291 0.98795 1.01513 0.95396 1.23096 0.98518 0.96877 0.99864 1.22205 0.91818 0.96263 0.84601 0.90318 1.22722 0.94450 1.01914 1.00239 1.22920 1.00624 1.01351 0.95271 1.22907 1.02500 0.91953 1.03896 1.88572 1.76465 1.36557 1.26738 1.22864 0.97570 0.95817 1.07524 1.22531 0.92421 1.01331 1.03835 0.93213 0.94778 0.94701 0.82586 0.95604 0.91022 0.90460 0.90080 0.90494 0.90453 0.87712 0.87044 0.89594 0.89431 0.88429 0.91744 0.90945 0.90381 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.36 12.95 55.43 0.72 -24.64 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.49 -13.51 8.33 -34.44 -0.29 -13.80 16 8 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 9 C 0.05 1.30 1.56 -155.66 -0.24 1.05 16 10 C 0.11 2.44 5.54 -3.82 -0.02 2.42 16 11 N -0.68 -13.93 6.47 -113.78 -0.74 -14.67 16 12 C 0.06 1.02 5.42 -3.82 -0.02 1.00 16 13 C 0.09 1.23 3.69 -25.70 -0.09 1.13 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 15 C -0.15 -1.63 6.57 -24.48 -0.16 -1.79 16 16 C -0.15 -1.42 6.52 -24.79 -0.16 -1.58 16 17 C 0.11 1.33 3.91 -26.01 -0.10 1.23 16 18 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.17 -1.99 5.56 -90.63 -0.50 -2.49 16 20 C -0.16 -2.08 9.89 -26.71 -0.26 -2.34 16 21 C -0.18 -2.12 10.22 -26.71 -0.27 -2.39 16 22 O -0.36 -5.66 8.67 -35.23 -0.31 -5.96 16 23 C -0.20 -4.61 9.96 -26.69 -0.27 -4.88 16 24 C -0.16 -3.98 9.46 -26.69 -0.25 -4.23 16 25 H 0.26 7.12 8.32 -40.82 -0.34 6.79 16 26 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.35 7.95 7.88 -39.29 -0.31 7.64 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.00 8.12 -51.93 -0.42 0.58 16 36 H 0.11 1.68 7.07 -51.93 -0.37 1.31 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -28.70 348.14 -10.65 -39.36 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.81 Total: 8.99 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -2.74 Total: -24.83 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: -0.02 Total: -39.31 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.31 Total: -5.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.70 -10.65 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722332255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.586 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds