Wall clock time and date at job start Mon Mar 30 2020 07:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99739 * 2 1 4 4 H 1.48501 * 109.47155 * 269.99859 * 3 2 1 5 5 H 1.48495 * 109.47222 * 29.99538 * 3 2 1 6 6 H 1.48502 * 109.47345 * 149.99976 * 3 2 1 7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99769 * 173.06253 * 7 2 1 9 9 C 1.50693 * 119.99769 * 353.06567 * 7 2 1 10 10 C 1.53003 * 115.55171 * 84.96502 * 9 7 2 11 11 N 1.46900 * 109.47041 * 65.16672 * 10 9 7 12 12 C 1.46900 * 111.00030 * 174.70266 * 11 10 9 13 13 C 1.53003 * 109.47264 * 179.97438 * 12 11 10 14 14 H 1.08994 * 110.27029 * 57.90512 * 13 12 11 15 15 C 1.54943 * 110.30828 * 180.02562 * 13 12 11 16 16 C 1.55303 * 100.93788 * 155.35542 * 15 13 12 17 17 C 1.54377 * 102.44235 * 325.76736 * 16 15 13 18 18 H 1.09005 * 109.82973 * 261.94398 * 17 16 15 19 19 C 1.52994 * 109.83435 * 140.97191 * 17 16 15 20 20 C 1.53001 * 117.49787 * 248.62367 * 19 17 16 21 21 C 1.52994 * 117.50341 * 179.97438 * 19 17 16 22 22 O 1.43646 * 110.30627 * 295.71230 * 13 12 11 23 23 C 1.53008 * 117.49709 * 230.62943 * 9 7 2 24 24 C 1.53005 * 117.50145 * 299.28814 * 9 7 2 25 25 H 0.96995 * 120.00298 * 5.05020 * 1 2 3 26 26 H 1.08995 * 109.46947 * 305.16669 * 10 9 7 27 27 H 1.09000 * 109.46844 * 185.16130 * 10 9 7 28 28 H 1.00905 * 110.99777 * 298.65503 * 11 10 9 29 29 H 1.09002 * 109.46632 * 59.99721 * 12 11 10 30 30 H 1.09003 * 109.46749 * 300.00070 * 12 11 10 31 31 H 1.08997 * 111.12647 * 37.44054 * 15 13 12 32 32 H 1.08998 * 111.12470 * 273.27342 * 15 13 12 33 33 H 1.09006 * 110.84489 * 84.05827 * 16 15 13 34 34 H 1.09000 * 110.84871 * 207.47049 * 16 15 13 35 35 H 1.09002 * 115.55289 * 34.32700 * 19 17 16 36 36 H 1.08998 * 117.49664 * 359.97438 * 20 19 17 37 37 H 1.08997 * 117.49910 * 145.01943 * 20 19 17 38 38 H 1.08998 * 117.50279 * 214.98090 * 21 19 17 39 39 H 1.09010 * 117.49884 * 0.02562 * 21 19 17 40 40 H 1.08994 * 117.49849 * 215.00516 * 23 9 7 41 41 H 1.08999 * 117.49377 * 0.03058 * 23 9 7 42 42 H 1.08999 * 117.49357 * 359.97438 * 24 9 7 43 43 H 1.08997 * 117.49622 * 145.00005 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0786 -1.1975 -0.1124 9 6 1.2593 -2.4942 0.1587 10 6 0.6847 -3.0865 -1.1297 11 7 1.7840 -3.4625 -2.0287 12 6 1.2755 -4.1497 -3.2233 13 6 2.4468 -4.5242 -4.1336 14 1 3.1553 -5.1552 -3.5971 15 6 1.9316 -5.2506 -5.4016 16 6 3.0822 -4.9511 -6.4008 17 6 3.5324 -3.5370 -5.9756 18 1 3.0720 -2.7917 -6.6243 19 6 5.0563 -3.4301 -6.0595 20 6 5.8288 -3.3016 -4.7451 21 6 5.6930 -2.0933 -5.6746 22 8 3.0991 -3.3401 -4.6193 23 6 1.7625 -3.4721 1.2226 24 6 0.4608 -2.6986 1.4477 25 1 -0.4850 0.8367 -0.0739 26 1 0.0520 -2.3461 -1.6193 27 1 0.0923 -3.9698 -0.8910 28 1 2.3353 -2.6564 -2.2825 29 1 0.5950 -3.4890 -3.7605 30 1 0.7441 -5.0532 -2.9241 31 1 0.9909 -4.8209 -5.7456 32 1 1.8316 -6.3219 -5.2272 33 1 3.8945 -5.6685 -6.2833 34 1 2.7143 -4.9490 -7.4268 35 1 5.5236 -3.9965 -6.8650 36 1 5.2514 -3.2928 -3.8207 37 1 6.8047 -3.7836 -4.6857 38 1 6.5795 -1.7806 -6.2264 39 1 5.0262 -1.2899 -5.3611 40 1 1.6841 -4.5371 1.0046 41 1 2.6323 -3.1746 1.8083 42 1 0.4749 -1.8928 2.1815 43 1 -0.4739 -3.2549 1.3778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722332255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:02 Heat of formation + Delta-G solvation = -20.789339 kcal Electronic energy + Delta-G solvation = -20667.059334 eV Core-core repulsion = 17712.598734 eV Total energy + Delta-G solvation = -2954.460600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79641 -38.74603 -37.44013 -35.57138 -33.96463 -33.04428 -30.95901 -27.87348 -27.00327 -24.79361 -23.24931 -22.90314 -22.53887 -22.31089 -20.97597 -20.70427 -18.04680 -17.93457 -16.97924 -16.64580 -16.30474 -16.08465 -15.71397 -15.54229 -15.25620 -14.55955 -14.13090 -14.04965 -13.52487 -13.36469 -13.10044 -12.96399 -12.89580 -12.78951 -12.49513 -12.32798 -12.30833 -12.20115 -12.03481 -11.89906 -11.68685 -11.28251 -11.09847 -10.87082 -10.71941 -10.42282 -10.34997 -9.92619 -9.10133 -8.09216 -6.19450 1.38329 1.40144 1.49848 2.42081 2.82259 2.93996 3.18574 3.30581 3.61969 3.70501 3.77691 4.02738 4.11810 4.15305 4.19655 4.32052 4.39952 4.42658 4.53295 4.63205 4.64878 4.71497 4.76281 4.83565 4.84792 4.93003 4.99582 5.01869 5.05853 5.07991 5.09975 5.17395 5.26841 5.28887 5.36232 5.41683 5.67307 5.69529 5.80294 6.23869 6.39785 6.49132 6.64788 6.89014 7.48037 8.98320 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.005551 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.346143 B = 5043.046308 C = 5984.679986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.026 3.974 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.501 4.501 8 H 0.048 0.952 9 C 0.023 3.977 10 C 0.120 3.880 11 N -0.677 5.677 12 C 0.061 3.939 13 C 0.087 3.913 14 H 0.071 0.929 15 C -0.144 4.144 16 C -0.135 4.135 17 C 0.096 3.904 18 H 0.076 0.924 19 C -0.160 4.160 20 C -0.175 4.175 21 C -0.182 4.182 22 O -0.396 6.396 23 C -0.177 4.177 24 C -0.166 4.166 25 H 0.258 0.742 26 H -0.001 1.001 27 H 0.049 0.951 28 H 0.340 0.660 29 H 0.014 0.986 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 -10.963 -14.498 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.022 3.978 10 C -0.009 4.009 11 N -0.307 5.307 12 C -0.069 4.069 13 C 0.030 3.970 14 H 0.089 0.911 15 C -0.182 4.182 16 C -0.172 4.172 17 C 0.038 3.962 18 H 0.094 0.906 19 C -0.178 4.178 20 C -0.212 4.212 21 C -0.219 4.219 22 O -0.316 6.316 23 C -0.214 4.214 24 C -0.204 4.204 25 H 0.067 0.933 26 H 0.017 0.983 27 H 0.068 0.932 28 H 0.158 0.842 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.151 0.849 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.477 -11.234 -13.971 19.062 hybrid contribution -0.325 1.969 -0.203 2.006 sum 6.152 -9.266 -14.175 18.017 Atomic orbital electron populations 1.70091 1.06984 1.27099 1.50512 1.25635 0.95505 1.01686 0.94605 0.85767 0.78940 0.80172 0.78081 1.20442 1.20937 1.19445 1.20663 0.92783 0.90368 1.50114 0.93358 1.18894 0.98304 0.93619 0.86937 1.21168 0.91226 0.95122 0.93405 1.60466 1.22735 1.31912 1.15582 1.22183 0.95543 0.98775 0.90383 1.23000 0.93086 0.86320 0.94627 0.91098 1.23269 0.99055 1.02313 0.93544 1.23081 0.98361 0.95073 1.00689 1.22457 0.92437 0.98095 0.83173 0.90603 1.22839 0.93919 1.01123 0.99931 1.22844 1.01360 1.02390 0.94621 1.22924 1.03106 0.91625 1.04269 1.88557 1.76835 1.37561 1.28635 1.22839 0.96555 0.96550 1.05490 1.22455 0.93741 1.01302 1.02917 0.93273 0.98297 0.93218 0.84212 0.96795 0.89320 0.90439 0.87851 0.89263 0.88101 0.84880 0.90222 0.87817 0.87335 0.90851 0.89435 0.91099 0.92566 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.30 12.95 21.45 0.28 -53.02 16 2 C 0.03 1.44 5.39 84.66 0.46 1.90 16 3 Si 0.94 44.97 29.55 68.60 2.03 47.00 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.50 -28.21 8.33 25.60 0.21 -28.00 16 8 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 9 C 0.02 1.18 1.56 -52.92 -0.08 1.10 16 10 C 0.12 5.62 5.54 86.30 0.48 6.10 16 11 N -0.68 -28.13 6.47 -513.88 -3.33 -31.45 16 12 C 0.06 2.00 5.42 86.30 0.47 2.47 16 13 C 0.09 2.39 3.69 31.26 0.12 2.51 16 14 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 15 C -0.14 -2.72 6.57 32.05 0.21 -2.51 16 16 C -0.13 -2.19 6.52 31.85 0.21 -1.99 16 17 C 0.10 2.20 3.91 31.06 0.12 2.32 16 18 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 19 C -0.16 -3.34 5.56 -10.80 -0.06 -3.40 16 20 C -0.18 -4.31 9.89 30.61 0.30 -4.01 16 21 C -0.18 -4.28 10.22 30.61 0.31 -3.97 16 22 O -0.40 -12.37 8.67 -148.98 -1.29 -13.66 16 23 C -0.18 -8.00 9.96 30.62 0.30 -7.69 16 24 C -0.17 -8.11 9.46 30.62 0.29 -7.82 16 25 H 0.26 14.51 8.32 -92.71 -0.77 13.74 16 26 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16 27 H 0.05 2.14 8.08 -2.39 -0.02 2.12 16 28 H 0.34 15.81 7.88 -89.69 -0.71 15.10 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.27 7.85 -2.38 -0.02 1.25 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.13 2.05 8.12 -2.39 -0.02 2.03 16 36 H 0.08 2.49 7.07 -2.39 -0.02 2.47 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.06 2.95 8.14 -2.39 -0.02 2.94 16 43 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -62.78 348.14 1.28 -61.50 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.25 Total: 32.61 kcal Atomic # 6 Polarization: -46.32 SS G_CDS: 3.34 Total: -42.99 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.05 Total: -84.47 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.29 Total: -13.66 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -62.78 1.28 -61.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722332255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.712 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds