Wall clock time and date at job start Mon Mar 30 2020 07:55:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86798 * 119.99739 * 2 1
4 4 H 1.48501 * 109.47155 * 269.99859 * 3 2 1
5 5 H 1.48495 * 109.47222 * 29.99538 * 3 2 1
6 6 H 1.48502 * 109.47345 * 149.99976 * 3 2 1
7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99769 * 173.06253 * 7 2 1
9 9 C 1.50693 * 119.99769 * 353.06567 * 7 2 1
10 10 C 1.53003 * 115.55171 * 84.96502 * 9 7 2
11 11 N 1.46900 * 109.47041 * 65.16672 * 10 9 7
12 12 C 1.46900 * 111.00030 * 174.70266 * 11 10 9
13 13 C 1.53003 * 109.47264 * 179.97438 * 12 11 10
14 14 H 1.08994 * 110.27029 * 57.90512 * 13 12 11
15 15 C 1.54943 * 110.30828 * 180.02562 * 13 12 11
16 16 C 1.55303 * 100.93788 * 155.35542 * 15 13 12
17 17 C 1.54377 * 102.44235 * 325.76736 * 16 15 13
18 18 H 1.09005 * 109.82973 * 261.94398 * 17 16 15
19 19 C 1.52994 * 109.83435 * 140.97191 * 17 16 15
20 20 C 1.53001 * 117.49787 * 248.62367 * 19 17 16
21 21 C 1.52994 * 117.50341 * 179.97438 * 19 17 16
22 22 O 1.43646 * 110.30627 * 295.71230 * 13 12 11
23 23 C 1.53008 * 117.49709 * 230.62943 * 9 7 2
24 24 C 1.53005 * 117.50145 * 299.28814 * 9 7 2
25 25 H 0.96995 * 120.00298 * 5.05020 * 1 2 3
26 26 H 1.08995 * 109.46947 * 305.16669 * 10 9 7
27 27 H 1.09000 * 109.46844 * 185.16130 * 10 9 7
28 28 H 1.00905 * 110.99777 * 298.65503 * 11 10 9
29 29 H 1.09002 * 109.46632 * 59.99721 * 12 11 10
30 30 H 1.09003 * 109.46749 * 300.00070 * 12 11 10
31 31 H 1.08997 * 111.12647 * 37.44054 * 15 13 12
32 32 H 1.08998 * 111.12470 * 273.27342 * 15 13 12
33 33 H 1.09006 * 110.84489 * 84.05827 * 16 15 13
34 34 H 1.09000 * 110.84871 * 207.47049 * 16 15 13
35 35 H 1.09002 * 115.55289 * 34.32700 * 19 17 16
36 36 H 1.08998 * 117.49664 * 359.97438 * 20 19 17
37 37 H 1.08997 * 117.49910 * 145.01943 * 20 19 17
38 38 H 1.08998 * 117.50279 * 214.98090 * 21 19 17
39 39 H 1.09010 * 117.49884 * 0.02562 * 21 19 17
40 40 H 1.08994 * 117.49849 * 215.00516 * 23 9 7
41 41 H 1.08999 * 117.49377 * 0.03058 * 23 9 7
42 42 H 1.08999 * 117.49357 * 359.97438 * 24 9 7
43 43 H 1.08997 * 117.49622 * 145.00005 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 3.0786 -1.1975 -0.1124
9 6 1.2593 -2.4942 0.1587
10 6 0.6847 -3.0865 -1.1297
11 7 1.7840 -3.4625 -2.0287
12 6 1.2755 -4.1497 -3.2233
13 6 2.4468 -4.5242 -4.1336
14 1 3.1553 -5.1552 -3.5971
15 6 1.9316 -5.2506 -5.4016
16 6 3.0822 -4.9511 -6.4008
17 6 3.5324 -3.5370 -5.9756
18 1 3.0720 -2.7917 -6.6243
19 6 5.0563 -3.4301 -6.0595
20 6 5.8288 -3.3016 -4.7451
21 6 5.6930 -2.0933 -5.6746
22 8 3.0991 -3.3401 -4.6193
23 6 1.7625 -3.4721 1.2226
24 6 0.4608 -2.6986 1.4477
25 1 -0.4850 0.8367 -0.0739
26 1 0.0520 -2.3461 -1.6193
27 1 0.0923 -3.9698 -0.8910
28 1 2.3353 -2.6564 -2.2825
29 1 0.5950 -3.4890 -3.7605
30 1 0.7441 -5.0532 -2.9241
31 1 0.9909 -4.8209 -5.7456
32 1 1.8316 -6.3219 -5.2272
33 1 3.8945 -5.6685 -6.2833
34 1 2.7143 -4.9490 -7.4268
35 1 5.5236 -3.9965 -6.8650
36 1 5.2514 -3.2928 -3.8207
37 1 6.8047 -3.7836 -4.6857
38 1 6.5795 -1.7806 -6.2264
39 1 5.0262 -1.2899 -5.3611
40 1 1.6841 -4.5371 1.0046
41 1 2.6323 -3.1746 1.8083
42 1 0.4749 -1.8928 2.1815
43 1 -0.4739 -3.2549 1.3778
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000722332255.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:55:02
Heat of formation + Delta-G solvation = -20.789339 kcal
Electronic energy + Delta-G solvation = -20667.059334 eV
Core-core repulsion = 17712.598734 eV
Total energy + Delta-G solvation = -2954.460600 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.79641 -38.74603 -37.44013 -35.57138 -33.96463 -33.04428 -30.95901 -27.87348
-27.00327 -24.79361 -23.24931 -22.90314 -22.53887 -22.31089 -20.97597 -20.70427
-18.04680 -17.93457 -16.97924 -16.64580 -16.30474 -16.08465 -15.71397 -15.54229
-15.25620 -14.55955 -14.13090 -14.04965 -13.52487 -13.36469 -13.10044 -12.96399
-12.89580 -12.78951 -12.49513 -12.32798 -12.30833 -12.20115 -12.03481 -11.89906
-11.68685 -11.28251 -11.09847 -10.87082 -10.71941 -10.42282 -10.34997 -9.92619
-9.10133 -8.09216 -6.19450 1.38329 1.40144 1.49848 2.42081 2.82259
2.93996 3.18574 3.30581 3.61969 3.70501 3.77691 4.02738 4.11810
4.15305 4.19655 4.32052 4.39952 4.42658 4.53295 4.63205 4.64878
4.71497 4.76281 4.83565 4.84792 4.93003 4.99582 5.01869 5.05853
5.07991 5.09975 5.17395 5.26841 5.28887 5.36232 5.41683 5.67307
5.69529 5.80294 6.23869 6.39785 6.49132 6.64788 6.89014 7.48037
8.98320
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.017244 B = 0.005551 C = 0.004677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1623.346143 B = 5043.046308 C = 5984.679986
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C 0.026 3.974
3 Si 0.944 3.056
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.270 1.270
7 C -0.501 4.501
8 H 0.048 0.952
9 C 0.023 3.977
10 C 0.120 3.880
11 N -0.677 5.677
12 C 0.061 3.939
13 C 0.087 3.913
14 H 0.071 0.929
15 C -0.144 4.144
16 C -0.135 4.135
17 C 0.096 3.904
18 H 0.076 0.924
19 C -0.160 4.160
20 C -0.175 4.175
21 C -0.182 4.182
22 O -0.396 6.396
23 C -0.177 4.177
24 C -0.166 4.166
25 H 0.258 0.742
26 H -0.001 1.001
27 H 0.049 0.951
28 H 0.340 0.660
29 H 0.014 0.986
30 H 0.089 0.911
31 H 0.077 0.923
32 H 0.103 0.897
33 H 0.089 0.911
34 H 0.100 0.900
35 H 0.133 0.867
36 H 0.079 0.921
37 H 0.103 0.897
38 H 0.108 0.892
39 H 0.073 0.927
40 H 0.087 0.913
41 H 0.070 0.930
42 H 0.056 0.944
43 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.474 -10.963 -14.498 19.294
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.174 4.174
3 Si 0.770 3.230
4 H -0.204 1.204
5 H -0.209 1.209
6 H -0.194 1.194
7 C -0.539 4.539
8 H 0.066 0.934
9 C 0.022 3.978
10 C -0.009 4.009
11 N -0.307 5.307
12 C -0.069 4.069
13 C 0.030 3.970
14 H 0.089 0.911
15 C -0.182 4.182
16 C -0.172 4.172
17 C 0.038 3.962
18 H 0.094 0.906
19 C -0.178 4.178
20 C -0.212 4.212
21 C -0.219 4.219
22 O -0.316 6.316
23 C -0.214 4.214
24 C -0.204 4.204
25 H 0.067 0.933
26 H 0.017 0.983
27 H 0.068 0.932
28 H 0.158 0.842
29 H 0.032 0.968
30 H 0.107 0.893
31 H 0.096 0.904
32 H 0.121 0.879
33 H 0.107 0.893
34 H 0.119 0.881
35 H 0.151 0.849
36 H 0.098 0.902
37 H 0.122 0.878
38 H 0.127 0.873
39 H 0.091 0.909
40 H 0.106 0.894
41 H 0.089 0.911
42 H 0.074 0.926
43 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 6.477 -11.234 -13.971 19.062
hybrid contribution -0.325 1.969 -0.203 2.006
sum 6.152 -9.266 -14.175 18.017
Atomic orbital electron populations
1.70091 1.06984 1.27099 1.50512 1.25635 0.95505 1.01686 0.94605
0.85767 0.78940 0.80172 0.78081 1.20442 1.20937 1.19445 1.20663
0.92783 0.90368 1.50114 0.93358 1.18894 0.98304 0.93619 0.86937
1.21168 0.91226 0.95122 0.93405 1.60466 1.22735 1.31912 1.15582
1.22183 0.95543 0.98775 0.90383 1.23000 0.93086 0.86320 0.94627
0.91098 1.23269 0.99055 1.02313 0.93544 1.23081 0.98361 0.95073
1.00689 1.22457 0.92437 0.98095 0.83173 0.90603 1.22839 0.93919
1.01123 0.99931 1.22844 1.01360 1.02390 0.94621 1.22924 1.03106
0.91625 1.04269 1.88557 1.76835 1.37561 1.28635 1.22839 0.96555
0.96550 1.05490 1.22455 0.93741 1.01302 1.02917 0.93273 0.98297
0.93218 0.84212 0.96795 0.89320 0.90439 0.87851 0.89263 0.88101
0.84880 0.90222 0.87817 0.87335 0.90851 0.89435 0.91099 0.92566
0.90916
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -53.30 12.95 21.45 0.28 -53.02 16
2 C 0.03 1.44 5.39 84.66 0.46 1.90 16
3 Si 0.94 44.97 29.55 68.60 2.03 47.00 16
4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16
5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16
6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16
7 C -0.50 -28.21 8.33 25.60 0.21 -28.00 16
8 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16
9 C 0.02 1.18 1.56 -52.92 -0.08 1.10 16
10 C 0.12 5.62 5.54 86.30 0.48 6.10 16
11 N -0.68 -28.13 6.47 -513.88 -3.33 -31.45 16
12 C 0.06 2.00 5.42 86.30 0.47 2.47 16
13 C 0.09 2.39 3.69 31.26 0.12 2.51 16
14 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
15 C -0.14 -2.72 6.57 32.05 0.21 -2.51 16
16 C -0.13 -2.19 6.52 31.85 0.21 -1.99 16
17 C 0.10 2.20 3.91 31.06 0.12 2.32 16
18 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16
19 C -0.16 -3.34 5.56 -10.80 -0.06 -3.40 16
20 C -0.18 -4.31 9.89 30.61 0.30 -4.01 16
21 C -0.18 -4.28 10.22 30.61 0.31 -3.97 16
22 O -0.40 -12.37 8.67 -148.98 -1.29 -13.66 16
23 C -0.18 -8.00 9.96 30.62 0.30 -7.69 16
24 C -0.17 -8.11 9.46 30.62 0.29 -7.82 16
25 H 0.26 14.51 8.32 -92.71 -0.77 13.74 16
26 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16
27 H 0.05 2.14 8.08 -2.39 -0.02 2.12 16
28 H 0.34 15.81 7.88 -89.69 -0.71 15.10 16
29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16
30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16
31 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16
32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16
33 H 0.09 1.27 7.85 -2.38 -0.02 1.25 16
34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
35 H 0.13 2.05 8.12 -2.39 -0.02 2.03 16
36 H 0.08 2.49 7.07 -2.39 -0.02 2.47 16
37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16
38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16
39 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16
40 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16
41 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16
42 H 0.06 2.95 8.14 -2.39 -0.02 2.94 16
43 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16
Total: -1.00 -62.78 348.14 1.28 -61.50
By element:
Atomic # 1 Polarization: 32.36 SS G_CDS: 0.25 Total: 32.61 kcal
Atomic # 6 Polarization: -46.32 SS G_CDS: 3.34 Total: -42.99 kcal
Atomic # 7 Polarization: -81.42 SS G_CDS: -3.05 Total: -84.47 kcal
Atomic # 8 Polarization: -12.37 SS G_CDS: -1.29 Total: -13.66 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal
Total: -62.78 1.28 -61.50 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000722332255.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.712 kcal
(2) G-P(sol) polarization free energy of solvation -62.782 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.070 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.789 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds