Wall clock time and date at job start Mon Mar 30 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47357 * 2 1 4 4 C 1.53004 * 109.47243 * 120.00207 * 2 1 3 5 5 C 1.53004 * 109.46921 * 65.93684 * 4 2 1 6 6 H 1.09003 * 109.47318 * 306.61393 * 5 4 2 7 7 C 1.52999 * 109.47047 * 186.61865 * 5 4 2 8 8 C 1.50703 * 109.47170 * 66.61948 * 5 4 2 9 9 O 1.21304 * 119.99819 * 359.97438 * 8 5 4 10 10 N 1.34768 * 120.00141 * 179.97438 * 8 5 4 11 11 C 1.40592 * 120.00128 * 179.97438 * 10 8 5 12 12 C 1.40647 * 126.07975 * 359.97438 * 11 10 8 13 13 N 1.30913 * 108.38508 * 179.77897 * 12 11 10 14 14 N 1.40064 * 108.40612 * 0.38155 * 13 12 11 15 15 C 1.37334 * 126.06794 * 179.87768 * 14 13 12 16 16 H 1.07992 * 119.99595 * 184.74230 * 15 14 13 17 17 C 1.38984 * 119.99592 * 4.47394 * 15 14 13 18 18 N 1.31289 * 120.00632 * 355.19729 * 17 15 14 19 19 Si 1.86801 * 119.99604 * 175.20601 * 17 15 14 20 20 H 1.48499 * 109.47401 * 94.99235 * 19 17 15 21 21 H 1.48506 * 109.46934 * 214.99597 * 19 17 15 22 22 H 1.48500 * 109.47064 * 334.99157 * 19 17 15 23 23 C 1.35679 * 126.08568 * 180.02562 * 11 10 8 24 24 H 1.08997 * 109.46919 * 64.75228 * 1 2 3 25 25 H 1.08999 * 109.47266 * 184.75497 * 1 2 3 26 26 H 1.09003 * 109.46780 * 304.75735 * 1 2 3 27 27 H 1.09003 * 109.46946 * 239.99825 * 2 1 3 28 28 H 1.09004 * 109.47058 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47231 * 300.00343 * 3 2 1 30 30 H 1.09002 * 109.46715 * 59.99945 * 3 2 1 31 31 H 1.09006 * 109.46735 * 305.94296 * 4 2 1 32 32 H 1.08994 * 109.47587 * 185.94189 * 4 2 1 33 33 H 1.09007 * 109.47269 * 295.00534 * 7 5 4 34 34 H 1.08998 * 109.47357 * 55.00216 * 7 5 4 35 35 H 1.09001 * 109.47342 * 175.00745 * 7 5 4 36 36 H 0.97000 * 120.00232 * 359.97438 * 10 8 5 37 37 H 1.08002 * 125.80839 * 0.02562 * 12 11 10 38 38 H 0.97001 * 120.00726 * 180.02562 * 18 17 15 39 39 H 1.08004 * 126.24525 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6555 -2.2005 1.1768 6 1 0.5829 -2.2890 1.0041 7 6 2.0181 -2.8868 2.4952 8 6 2.4025 -2.8589 0.0456 9 8 3.1670 -2.2088 -0.6360 10 7 2.2213 -4.1699 -0.2088 11 6 2.9178 -4.7840 -1.2644 12 6 3.8294 -4.1555 -2.1317 13 7 4.2753 -5.0480 -2.9793 14 7 3.6621 -6.2745 -2.6936 15 6 3.8667 -7.4561 -3.3629 16 1 3.2835 -8.3287 -3.1085 17 6 4.8202 -7.5272 -4.3715 18 7 5.4587 -6.4439 -4.7491 19 14 5.1933 -9.1643 -5.1902 20 1 4.3866 -9.2929 -6.4303 21 1 6.6374 -9.2300 -5.5301 22 1 4.8526 -10.2714 -4.2611 23 6 2.8294 -6.0881 -1.6284 24 1 -0.3633 0.4383 -0.9295 25 1 -0.3634 -1.0241 0.0852 26 1 -0.3633 0.5859 0.8443 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.5924 -0.2726 2.1361 32 1 3.1248 -0.6301 1.3041 33 1 3.1004 -2.8762 2.6248 34 1 1.5480 -2.3556 3.3227 35 1 1.6645 -3.9178 2.4774 36 1 1.6103 -4.6898 0.3364 37 1 4.1160 -3.1147 -2.1009 38 1 6.1240 -6.4935 -5.4533 39 1 2.2127 -6.8413 -1.1605 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765430815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:48 Heat of formation + Delta-G solvation = 21.848489 kcal Electronic energy + Delta-G solvation = -20097.125478 eV Core-core repulsion = 17040.973449 eV Total energy + Delta-G solvation = -3056.152028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04716 -38.94189 -36.30417 -34.13662 -33.34237 -32.57252 -30.17142 -27.73188 -27.13139 -26.52058 -24.99656 -23.15627 -20.87705 -20.29869 -19.46613 -19.22204 -17.47166 -16.55018 -15.49616 -15.34760 -14.97449 -14.73525 -14.26380 -13.88419 -13.59188 -13.37903 -13.04107 -12.87786 -12.71620 -12.22948 -12.17265 -11.83196 -11.63651 -11.60019 -11.40742 -11.33254 -11.23687 -10.90799 -10.55581 -10.51260 -10.40715 -10.34524 -9.97676 -9.12027 -8.93619 -8.74550 -8.01628 -6.64105 -6.53119 -4.19442 2.89683 3.06457 3.08942 3.12127 3.68722 3.72747 3.92984 4.46866 4.69537 4.79726 4.92486 5.04370 5.04776 5.15926 5.29524 5.37160 5.50037 5.63536 5.66613 5.80378 5.87827 5.91177 5.92364 5.99228 6.07124 6.20360 6.27891 6.33322 6.48441 6.51968 6.67068 6.95952 7.01615 7.19510 7.30424 7.89849 8.25349 8.35667 8.68776 8.96276 9.42065 9.71523 10.43209 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038572 B = 0.003977 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.732774 B = 7038.235155 C = 7424.845774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.142 4.142 4 C -0.091 4.091 5 C -0.111 4.111 6 H 0.094 0.906 7 C -0.144 4.144 8 C 0.502 3.498 9 O -0.533 6.533 10 N -0.627 5.627 11 C -0.058 4.058 12 C -0.034 4.034 13 N -0.261 5.261 14 N -0.144 5.144 15 C -0.325 4.325 16 H 0.115 0.885 17 C 0.047 3.953 18 N -0.771 5.771 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.085 4.085 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.395 0.605 37 H 0.176 0.824 38 H 0.274 0.726 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 6.539 11.361 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.199 4.199 4 C -0.128 4.128 5 C -0.133 4.133 6 H 0.112 0.888 7 C -0.201 4.201 8 C 0.288 3.712 9 O -0.410 6.410 10 N -0.269 5.269 11 C -0.164 4.164 12 C -0.209 4.209 13 N -0.093 5.093 14 N 0.088 4.912 15 C -0.457 4.457 16 H 0.133 0.867 17 C -0.170 4.170 18 N -0.397 5.397 19 Si 0.757 3.243 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.236 4.236 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.228 0.772 37 H 0.192 0.808 38 H 0.085 0.915 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.132 6.874 9.709 13.870 hybrid contribution -0.818 -0.965 0.668 1.431 sum -7.950 5.909 10.377 14.346 Atomic orbital electron populations 1.21915 0.96086 1.01345 1.01182 1.21268 0.94897 0.96241 1.00132 1.21771 1.01163 0.96080 1.00876 1.21427 1.01867 0.92000 0.97539 1.21390 1.00958 0.96688 0.94234 0.88827 1.21779 1.02461 1.00269 0.95621 1.20388 0.83469 0.81625 0.85671 1.90556 1.37346 1.63023 1.50047 1.42591 1.43569 1.09265 1.31462 1.17313 1.07845 0.92402 0.98799 1.24103 1.00085 1.00331 0.96422 1.78237 1.20521 0.88300 1.22216 1.44529 1.22967 1.07137 1.16564 1.19858 1.22315 0.86283 1.17231 0.86700 1.25625 0.95597 0.99096 0.96695 1.70221 1.18947 1.27334 1.23231 0.85836 0.78412 0.80520 0.79517 1.19691 1.20062 1.18783 1.21265 1.07200 0.96128 0.99012 0.93042 0.92808 0.93202 0.88945 0.92638 0.93098 0.93421 0.91958 0.91074 0.92047 0.91818 0.92231 0.77244 0.80757 0.91528 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.07 37.16 0.34 -1.25 16 2 C -0.11 -1.35 2.71 -90.62 -0.25 -1.60 16 3 C -0.14 -1.60 9.19 37.16 0.34 -1.25 16 4 C -0.09 -1.07 3.78 -26.73 -0.10 -1.18 16 5 C -0.11 -1.34 2.62 -91.77 -0.24 -1.58 16 6 H 0.09 0.98 6.23 -51.93 -0.32 0.66 16 7 C -0.14 -1.43 9.05 37.16 0.34 -1.09 16 8 C 0.50 8.64 6.80 -10.99 -0.07 8.57 16 9 O -0.53 -11.16 11.25 5.54 0.06 -11.09 16 10 N -0.63 -11.20 5.37 -10.00 -0.05 -11.25 16 11 C -0.06 -1.36 6.90 -83.84 -0.58 -1.93 16 12 C -0.03 -0.91 10.85 -17.03 -0.18 -1.09 16 13 N -0.26 -7.73 10.41 30.80 0.32 -7.41 16 14 N -0.14 -4.01 3.74 -11.41 -0.04 -4.06 16 15 C -0.32 -8.72 10.24 -14.81 -0.15 -8.87 16 16 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 17 C 0.05 1.23 5.50 -17.51 -0.10 1.13 16 18 N -0.77 -21.82 11.83 55.49 0.66 -21.17 16 19 Si 0.93 19.12 29.55 -169.99 -5.02 14.09 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.09 -2.04 11.49 -16.40 -0.19 -2.23 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.57 6.27 -51.93 -0.33 0.24 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 1.49 6.02 -51.93 -0.31 1.18 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.53 7.71 -51.93 -0.40 0.13 16 36 H 0.39 5.51 8.34 -40.82 -0.34 5.17 16 37 H 0.18 4.63 5.92 -52.49 -0.31 4.32 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.14 2.87 8.06 -52.48 -0.42 2.44 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -32.71 319.40 -5.89 -38.60 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.77 Total: 9.84 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.85 Total: -12.37 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.88 Total: -43.88 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.06 Total: -11.09 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.71 -5.89 -38.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765430815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.448 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds