Wall clock time and date at job start Mon Mar 30 2020 06:27:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.47357 * 2 1
4 4 C 1.53004 * 109.47243 * 120.00207 * 2 1 3
5 5 C 1.53004 * 109.46921 * 65.93684 * 4 2 1
6 6 H 1.09003 * 109.47318 * 306.61393 * 5 4 2
7 7 C 1.52999 * 109.47047 * 186.61865 * 5 4 2
8 8 C 1.50703 * 109.47170 * 66.61948 * 5 4 2
9 9 O 1.21304 * 119.99819 * 359.97438 * 8 5 4
10 10 N 1.34768 * 120.00141 * 179.97438 * 8 5 4
11 11 C 1.40592 * 120.00128 * 179.97438 * 10 8 5
12 12 C 1.40647 * 126.07975 * 359.97438 * 11 10 8
13 13 N 1.30913 * 108.38508 * 179.77897 * 12 11 10
14 14 N 1.40064 * 108.40612 * 0.38155 * 13 12 11
15 15 C 1.37334 * 126.06794 * 179.87768 * 14 13 12
16 16 H 1.07992 * 119.99595 * 184.74230 * 15 14 13
17 17 C 1.38984 * 119.99592 * 4.47394 * 15 14 13
18 18 N 1.31289 * 120.00632 * 355.19729 * 17 15 14
19 19 Si 1.86801 * 119.99604 * 175.20601 * 17 15 14
20 20 H 1.48499 * 109.47401 * 94.99235 * 19 17 15
21 21 H 1.48506 * 109.46934 * 214.99597 * 19 17 15
22 22 H 1.48500 * 109.47064 * 334.99157 * 19 17 15
23 23 C 1.35679 * 126.08568 * 180.02562 * 11 10 8
24 24 H 1.08997 * 109.46919 * 64.75228 * 1 2 3
25 25 H 1.08999 * 109.47266 * 184.75497 * 1 2 3
26 26 H 1.09003 * 109.46780 * 304.75735 * 1 2 3
27 27 H 1.09003 * 109.46946 * 239.99825 * 2 1 3
28 28 H 1.09004 * 109.47058 * 179.97438 * 3 2 1
29 29 H 1.08993 * 109.47231 * 300.00343 * 3 2 1
30 30 H 1.09002 * 109.46715 * 59.99945 * 3 2 1
31 31 H 1.09006 * 109.46735 * 305.94296 * 4 2 1
32 32 H 1.08994 * 109.47587 * 185.94189 * 4 2 1
33 33 H 1.09007 * 109.47269 * 295.00534 * 7 5 4
34 34 H 1.08998 * 109.47357 * 55.00216 * 7 5 4
35 35 H 1.09001 * 109.47342 * 175.00745 * 7 5 4
36 36 H 0.97000 * 120.00232 * 359.97438 * 10 8 5
37 37 H 1.08002 * 125.80839 * 0.02562 * 12 11 10
38 38 H 0.97001 * 120.00726 * 180.02562 * 18 17 15
39 39 H 1.08004 * 126.24525 * 359.97438 * 23 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 1.6555 -2.2005 1.1768
6 1 0.5829 -2.2890 1.0041
7 6 2.0181 -2.8868 2.4952
8 6 2.4025 -2.8589 0.0456
9 8 3.1670 -2.2088 -0.6360
10 7 2.2213 -4.1699 -0.2088
11 6 2.9178 -4.7840 -1.2644
12 6 3.8294 -4.1555 -2.1317
13 7 4.2753 -5.0480 -2.9793
14 7 3.6621 -6.2745 -2.6936
15 6 3.8667 -7.4561 -3.3629
16 1 3.2835 -8.3287 -3.1085
17 6 4.8202 -7.5272 -4.3715
18 7 5.4587 -6.4439 -4.7491
19 14 5.1933 -9.1643 -5.1902
20 1 4.3866 -9.2929 -6.4303
21 1 6.6374 -9.2300 -5.5301
22 1 4.8526 -10.2714 -4.2611
23 6 2.8294 -6.0881 -1.6284
24 1 -0.3633 0.4383 -0.9295
25 1 -0.3634 -1.0241 0.0852
26 1 -0.3633 0.5859 0.8443
27 1 1.8933 -0.5139 -0.8900
28 1 3.1301 1.4424 0.0005
29 1 1.6767 1.9563 -0.8899
30 1 1.6767 1.9563 0.8900
31 1 1.5924 -0.2726 2.1361
32 1 3.1248 -0.6301 1.3041
33 1 3.1004 -2.8762 2.6248
34 1 1.5480 -2.3556 3.3227
35 1 1.6645 -3.9178 2.4774
36 1 1.6103 -4.6898 0.3364
37 1 4.1160 -3.1147 -2.1009
38 1 6.1240 -6.4935 -5.4533
39 1 2.2127 -6.8413 -1.1605
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000765430815.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:27:48
Heat of formation + Delta-G solvation = 21.848489 kcal
Electronic energy + Delta-G solvation = -20097.125478 eV
Core-core repulsion = 17040.973449 eV
Total energy + Delta-G solvation = -3056.152028 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.04716 -38.94189 -36.30417 -34.13662 -33.34237 -32.57252 -30.17142 -27.73188
-27.13139 -26.52058 -24.99656 -23.15627 -20.87705 -20.29869 -19.46613 -19.22204
-17.47166 -16.55018 -15.49616 -15.34760 -14.97449 -14.73525 -14.26380 -13.88419
-13.59188 -13.37903 -13.04107 -12.87786 -12.71620 -12.22948 -12.17265 -11.83196
-11.63651 -11.60019 -11.40742 -11.33254 -11.23687 -10.90799 -10.55581 -10.51260
-10.40715 -10.34524 -9.97676 -9.12027 -8.93619 -8.74550 -8.01628 -6.64105
-6.53119 -4.19442 2.89683 3.06457 3.08942 3.12127 3.68722 3.72747
3.92984 4.46866 4.69537 4.79726 4.92486 5.04370 5.04776 5.15926
5.29524 5.37160 5.50037 5.63536 5.66613 5.80378 5.87827 5.91177
5.92364 5.99228 6.07124 6.20360 6.27891 6.33322 6.48441 6.51968
6.67068 6.95952 7.01615 7.19510 7.30424 7.89849 8.25349 8.35667
8.68776 8.96276 9.42065 9.71523 10.43209
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.038572 B = 0.003977 C = 0.003770
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 725.732774 B = 7038.235155 C = 7424.845774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.107 4.107
3 C -0.142 4.142
4 C -0.091 4.091
5 C -0.111 4.111
6 H 0.094 0.906
7 C -0.144 4.144
8 C 0.502 3.498
9 O -0.533 6.533
10 N -0.627 5.627
11 C -0.058 4.058
12 C -0.034 4.034
13 N -0.261 5.261
14 N -0.144 5.144
15 C -0.325 4.325
16 H 0.115 0.885
17 C 0.047 3.953
18 N -0.771 5.771
19 Si 0.933 3.067
20 H -0.272 1.272
21 H -0.276 1.276
22 H -0.264 1.264
23 C -0.085 4.085
24 H 0.050 0.950
25 H 0.053 0.947
26 H 0.049 0.951
27 H 0.092 0.908
28 H 0.054 0.946
29 H 0.050 0.950
30 H 0.047 0.953
31 H 0.062 0.938
32 H 0.071 0.929
33 H 0.060 0.940
34 H 0.063 0.937
35 H 0.059 0.941
36 H 0.395 0.605
37 H 0.176 0.824
38 H 0.274 0.726
39 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.635 6.539 11.361 15.697
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.125 4.125
3 C -0.199 4.199
4 C -0.128 4.128
5 C -0.133 4.133
6 H 0.112 0.888
7 C -0.201 4.201
8 C 0.288 3.712
9 O -0.410 6.410
10 N -0.269 5.269
11 C -0.164 4.164
12 C -0.209 4.209
13 N -0.093 5.093
14 N 0.088 4.912
15 C -0.457 4.457
16 H 0.133 0.867
17 C -0.170 4.170
18 N -0.397 5.397
19 Si 0.757 3.243
20 H -0.197 1.197
21 H -0.201 1.201
22 H -0.188 1.188
23 C -0.236 4.236
24 H 0.070 0.930
25 H 0.072 0.928
26 H 0.068 0.932
27 H 0.111 0.889
28 H 0.074 0.926
29 H 0.069 0.931
30 H 0.066 0.934
31 H 0.080 0.920
32 H 0.089 0.911
33 H 0.080 0.920
34 H 0.082 0.918
35 H 0.078 0.922
36 H 0.228 0.772
37 H 0.192 0.808
38 H 0.085 0.915
39 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -7.132 6.874 9.709 13.870
hybrid contribution -0.818 -0.965 0.668 1.431
sum -7.950 5.909 10.377 14.346
Atomic orbital electron populations
1.21915 0.96086 1.01345 1.01182 1.21268 0.94897 0.96241 1.00132
1.21771 1.01163 0.96080 1.00876 1.21427 1.01867 0.92000 0.97539
1.21390 1.00958 0.96688 0.94234 0.88827 1.21779 1.02461 1.00269
0.95621 1.20388 0.83469 0.81625 0.85671 1.90556 1.37346 1.63023
1.50047 1.42591 1.43569 1.09265 1.31462 1.17313 1.07845 0.92402
0.98799 1.24103 1.00085 1.00331 0.96422 1.78237 1.20521 0.88300
1.22216 1.44529 1.22967 1.07137 1.16564 1.19858 1.22315 0.86283
1.17231 0.86700 1.25625 0.95597 0.99096 0.96695 1.70221 1.18947
1.27334 1.23231 0.85836 0.78412 0.80520 0.79517 1.19691 1.20062
1.18783 1.21265 1.07200 0.96128 0.99012 0.93042 0.92808 0.93202
0.88945 0.92638 0.93098 0.93421 0.91958 0.91074 0.92047 0.91818
0.92231 0.77244 0.80757 0.91528 0.83836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.59 9.07 37.16 0.34 -1.25 16
2 C -0.11 -1.35 2.71 -90.62 -0.25 -1.60 16
3 C -0.14 -1.60 9.19 37.16 0.34 -1.25 16
4 C -0.09 -1.07 3.78 -26.73 -0.10 -1.18 16
5 C -0.11 -1.34 2.62 -91.77 -0.24 -1.58 16
6 H 0.09 0.98 6.23 -51.93 -0.32 0.66 16
7 C -0.14 -1.43 9.05 37.16 0.34 -1.09 16
8 C 0.50 8.64 6.80 -10.99 -0.07 8.57 16
9 O -0.53 -11.16 11.25 5.54 0.06 -11.09 16
10 N -0.63 -11.20 5.37 -10.00 -0.05 -11.25 16
11 C -0.06 -1.36 6.90 -83.84 -0.58 -1.93 16
12 C -0.03 -0.91 10.85 -17.03 -0.18 -1.09 16
13 N -0.26 -7.73 10.41 30.80 0.32 -7.41 16
14 N -0.14 -4.01 3.74 -11.41 -0.04 -4.06 16
15 C -0.32 -8.72 10.24 -14.81 -0.15 -8.87 16
16 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16
17 C 0.05 1.23 5.50 -17.51 -0.10 1.13 16
18 N -0.77 -21.82 11.83 55.49 0.66 -21.17 16
19 Si 0.93 19.12 29.55 -169.99 -5.02 14.09 16
20 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16
21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16
22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16
23 C -0.09 -2.04 11.49 -16.40 -0.19 -2.23 16
24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
25 H 0.05 0.57 6.27 -51.93 -0.33 0.24 16
26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
27 H 0.09 1.49 6.02 -51.93 -0.31 1.18 16
28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16
33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.06 0.53 7.71 -51.93 -0.40 0.13 16
36 H 0.39 5.51 8.34 -40.82 -0.34 5.17 16
37 H 0.18 4.63 5.92 -52.49 -0.31 4.32 16
38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16
39 H 0.14 2.87 8.06 -52.48 -0.42 2.44 16
LS Contribution 319.40 15.07 4.81 4.81
Total: -1.00 -32.71 319.40 -5.89 -38.60
By element:
Atomic # 1 Polarization: 15.62 SS G_CDS: -5.77 Total: 9.84 kcal
Atomic # 6 Polarization: -11.53 SS G_CDS: -0.85 Total: -12.37 kcal
Atomic # 7 Polarization: -44.76 SS G_CDS: 0.88 Total: -43.88 kcal
Atomic # 8 Polarization: -11.16 SS G_CDS: 0.06 Total: -11.09 kcal
Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -32.71 -5.89 -38.60 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000765430815.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.448 kcal
(2) G-P(sol) polarization free energy of solvation -32.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.737 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds