Wall clock time and date at job start Mon Mar 30 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47357 * 2 1 4 4 C 1.53004 * 109.47243 * 120.00207 * 2 1 3 5 5 C 1.53004 * 109.46921 * 65.93684 * 4 2 1 6 6 H 1.09003 * 109.47318 * 306.61393 * 5 4 2 7 7 C 1.52999 * 109.47047 * 186.61865 * 5 4 2 8 8 C 1.50703 * 109.47170 * 66.61948 * 5 4 2 9 9 O 1.21304 * 119.99819 * 359.97438 * 8 5 4 10 10 N 1.34768 * 120.00141 * 179.97438 * 8 5 4 11 11 C 1.40592 * 120.00128 * 179.97438 * 10 8 5 12 12 C 1.40647 * 126.07975 * 359.97438 * 11 10 8 13 13 N 1.30913 * 108.38508 * 179.77897 * 12 11 10 14 14 N 1.40064 * 108.40612 * 0.38155 * 13 12 11 15 15 C 1.37334 * 126.06794 * 179.87768 * 14 13 12 16 16 H 1.07992 * 119.99595 * 184.74230 * 15 14 13 17 17 C 1.38984 * 119.99592 * 4.47394 * 15 14 13 18 18 N 1.31289 * 120.00632 * 355.19729 * 17 15 14 19 19 Si 1.86801 * 119.99604 * 175.20601 * 17 15 14 20 20 H 1.48499 * 109.47401 * 94.99235 * 19 17 15 21 21 H 1.48506 * 109.46934 * 214.99597 * 19 17 15 22 22 H 1.48500 * 109.47064 * 334.99157 * 19 17 15 23 23 C 1.35679 * 126.08568 * 180.02562 * 11 10 8 24 24 H 1.08997 * 109.46919 * 64.75228 * 1 2 3 25 25 H 1.08999 * 109.47266 * 184.75497 * 1 2 3 26 26 H 1.09003 * 109.46780 * 304.75735 * 1 2 3 27 27 H 1.09003 * 109.46946 * 239.99825 * 2 1 3 28 28 H 1.09004 * 109.47058 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47231 * 300.00343 * 3 2 1 30 30 H 1.09002 * 109.46715 * 59.99945 * 3 2 1 31 31 H 1.09006 * 109.46735 * 305.94296 * 4 2 1 32 32 H 1.08994 * 109.47587 * 185.94189 * 4 2 1 33 33 H 1.09007 * 109.47269 * 295.00534 * 7 5 4 34 34 H 1.08998 * 109.47357 * 55.00216 * 7 5 4 35 35 H 1.09001 * 109.47342 * 175.00745 * 7 5 4 36 36 H 0.97000 * 120.00232 * 359.97438 * 10 8 5 37 37 H 1.08002 * 125.80839 * 0.02562 * 12 11 10 38 38 H 0.97001 * 120.00726 * 180.02562 * 18 17 15 39 39 H 1.08004 * 126.24525 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6555 -2.2005 1.1768 6 1 0.5829 -2.2890 1.0041 7 6 2.0181 -2.8868 2.4952 8 6 2.4025 -2.8589 0.0456 9 8 3.1670 -2.2088 -0.6360 10 7 2.2213 -4.1699 -0.2088 11 6 2.9178 -4.7840 -1.2644 12 6 3.8294 -4.1555 -2.1317 13 7 4.2753 -5.0480 -2.9793 14 7 3.6621 -6.2745 -2.6936 15 6 3.8667 -7.4561 -3.3629 16 1 3.2835 -8.3287 -3.1085 17 6 4.8202 -7.5272 -4.3715 18 7 5.4587 -6.4439 -4.7491 19 14 5.1933 -9.1643 -5.1902 20 1 4.3866 -9.2929 -6.4303 21 1 6.6374 -9.2300 -5.5301 22 1 4.8526 -10.2714 -4.2611 23 6 2.8294 -6.0881 -1.6284 24 1 -0.3633 0.4383 -0.9295 25 1 -0.3634 -1.0241 0.0852 26 1 -0.3633 0.5859 0.8443 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.5924 -0.2726 2.1361 32 1 3.1248 -0.6301 1.3041 33 1 3.1004 -2.8762 2.6248 34 1 1.5480 -2.3556 3.3227 35 1 1.6645 -3.9178 2.4774 36 1 1.6103 -4.6898 0.3364 37 1 4.1160 -3.1147 -2.1009 38 1 6.1240 -6.4935 -5.4533 39 1 2.2127 -6.8413 -1.1605 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765430815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:47 Heat of formation + Delta-G solvation = 0.488332 kcal Electronic energy + Delta-G solvation = -20098.051724 eV Core-core repulsion = 17040.973449 eV Total energy + Delta-G solvation = -3057.078274 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74813 -40.56207 -37.43504 -35.83614 -35.03416 -33.73866 -32.18730 -29.58180 -28.00208 -27.39830 -26.89588 -24.46914 -22.79201 -21.55751 -21.09276 -20.59793 -19.25145 -17.90564 -17.40297 -16.94909 -16.25911 -15.91724 -15.77347 -15.31495 -15.09208 -14.80758 -14.63083 -14.31687 -13.60499 -13.48546 -13.32658 -13.10647 -12.99710 -12.91999 -12.82397 -12.71127 -12.53338 -12.29801 -12.07803 -11.85582 -11.46523 -11.29630 -11.25894 -10.96826 -10.80916 -10.35844 -10.09080 -8.49254 -8.46888 -6.23710 1.24443 1.39609 1.56829 1.59402 1.90225 2.08185 2.38457 2.56411 2.95149 3.08751 3.75027 3.93006 3.99251 4.20013 4.39278 4.44480 4.46970 4.52181 4.63895 4.81252 4.85525 4.92594 4.98001 5.00199 5.02996 5.06538 5.13090 5.13878 5.21307 5.30586 5.35761 5.42720 5.50073 5.59780 5.69498 5.97079 6.34525 6.75200 6.84625 7.46179 7.52501 7.70656 8.52842 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038572 B = 0.003977 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.732774 B = 7038.235155 C = 7424.845774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.140 4.140 4 C -0.089 4.089 5 C -0.098 4.098 6 H 0.121 0.879 7 C -0.141 4.141 8 C 0.496 3.504 9 O -0.573 6.573 10 N -0.620 5.620 11 C -0.042 4.042 12 C -0.061 4.061 13 N -0.312 5.312 14 N -0.169 5.169 15 C -0.356 4.356 16 H 0.141 0.859 17 C -0.006 4.006 18 N -0.826 5.826 19 Si 1.019 2.981 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.243 1.243 23 C -0.083 4.083 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.417 0.583 37 H 0.165 0.835 38 H 0.276 0.724 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 5.406 13.673 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.197 4.197 4 C -0.127 4.127 5 C -0.119 4.119 6 H 0.138 0.862 7 C -0.198 4.198 8 C 0.285 3.715 9 O -0.452 6.452 10 N -0.265 5.265 11 C -0.148 4.148 12 C -0.237 4.237 13 N -0.145 5.145 14 N 0.062 4.938 15 C -0.487 4.487 16 H 0.158 0.842 17 C -0.218 4.218 18 N -0.455 5.455 19 Si 0.838 3.162 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.166 1.166 23 C -0.233 4.233 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.254 0.746 37 H 0.182 0.818 38 H 0.085 0.915 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.501 5.747 12.078 16.407 hybrid contribution -0.155 -0.475 0.039 0.502 sum -9.656 5.271 12.117 16.366 Atomic orbital electron populations 1.21880 0.94170 1.02006 1.02030 1.21233 0.96505 0.96508 0.98690 1.21754 1.00249 0.95663 1.02036 1.21455 1.00673 0.92080 0.98449 1.21443 1.01375 0.96231 0.92897 0.86171 1.21812 1.01719 1.01352 0.94964 1.21547 0.82769 0.81033 0.86144 1.90558 1.39145 1.63876 1.51668 1.42598 1.43634 1.09844 1.30470 1.17406 1.06395 0.92145 0.98896 1.24129 1.01810 0.99925 0.97797 1.78128 1.22512 0.89781 1.24057 1.44827 1.24054 1.06939 1.18025 1.20627 1.23343 0.86794 1.17953 0.84195 1.26887 0.94697 1.03316 0.96879 1.70407 1.20171 1.30445 1.24433 0.84580 0.77848 0.75295 0.78470 1.18954 1.20219 1.16579 1.22008 1.06307 0.97180 0.97844 0.93532 0.92463 0.90795 0.93435 0.94128 0.93133 0.91020 0.88436 0.93433 0.93764 0.88678 0.90846 0.74591 0.81814 0.91456 0.79585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.07 71.98 0.65 -2.09 16 2 C -0.11 -2.72 2.71 -10.79 -0.03 -2.74 16 3 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 4 C -0.09 -1.94 3.78 30.60 0.12 -1.82 16 5 C -0.10 -2.12 2.62 -11.54 -0.03 -2.15 16 6 H 0.12 2.04 6.23 -2.39 -0.01 2.02 16 7 C -0.14 -2.30 9.05 71.98 0.65 -1.65 16 8 C 0.50 16.86 6.80 87.66 0.60 17.45 16 9 O -0.57 -25.03 11.25 -3.10 -0.03 -25.06 16 10 N -0.62 -21.40 5.37 -303.94 -1.63 -23.04 16 11 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 12 C -0.06 -3.45 10.85 85.42 0.93 -2.52 16 13 N -0.31 -19.36 10.41 -56.46 -0.59 -19.95 16 14 N -0.17 -9.59 3.74 -190.02 -0.71 -10.30 16 15 C -0.36 -19.20 10.24 84.01 0.86 -18.34 16 16 H 0.14 6.52 7.84 -2.91 -0.02 6.50 16 17 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 18 N -0.83 -48.70 11.83 21.66 0.26 -48.44 16 19 Si 1.02 39.13 29.55 68.60 2.03 41.16 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 21 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 22 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 23 C -0.08 -3.92 11.49 83.38 0.96 -2.96 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.03 6.27 -2.39 -0.01 1.02 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.60 6.02 -2.39 -0.01 1.59 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.26 7.90 -2.39 -0.02 1.25 16 33 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.01 7.71 -2.39 -0.02 0.99 16 36 H 0.42 10.45 8.34 -92.71 -0.77 9.67 16 37 H 0.16 9.36 5.92 -2.91 -0.02 9.34 16 38 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 Total: -1.00 -76.87 319.40 5.69 -71.18 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.28 Total: 35.27 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 6.09 Total: -20.81 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -2.67 Total: -101.73 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.03 Total: -25.06 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -76.87 5.69 -71.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765430815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.669 kcal (2) G-P(sol) polarization free energy of solvation -76.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds