Wall clock time and date at job start Mon Mar 30 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.46951 * 2 1 4 4 C 1.52994 * 109.47226 * 120.00316 * 2 1 3 5 5 C 1.53008 * 109.47085 * 64.99828 * 4 2 1 6 6 H 1.08997 * 109.46871 * 304.99875 * 5 4 2 7 7 C 1.53003 * 109.46946 * 65.00062 * 5 4 2 8 8 C 1.50696 * 109.46831 * 184.99747 * 5 4 2 9 9 O 1.21297 * 120.00357 * 0.02562 * 8 5 4 10 10 N 1.34779 * 120.00001 * 179.97438 * 8 5 4 11 11 C 1.40588 * 120.00316 * 180.02562 * 10 8 5 12 12 C 1.40654 * 126.08389 * 0.02562 * 11 10 8 13 13 N 1.30905 * 108.38683 * 179.72009 * 12 11 10 14 14 N 1.40064 * 108.40777 * 0.43987 * 13 12 11 15 15 C 1.37321 * 126.06857 * 179.82149 * 14 13 12 16 16 H 1.07998 * 120.00111 * 173.76490 * 15 14 13 17 17 C 1.38990 * 120.00353 * 354.03771 * 15 14 13 18 18 N 1.31294 * 119.99607 * 5.58222 * 17 15 14 19 19 Si 1.86794 * 120.00402 * 185.58712 * 17 15 14 20 20 H 1.48500 * 109.47486 * 94.97709 * 19 17 15 21 21 H 1.48508 * 109.47057 * 214.97869 * 19 17 15 22 22 H 1.48506 * 109.47163 * 334.97268 * 19 17 15 23 23 C 1.35688 * 126.08302 * 180.02562 * 11 10 8 24 24 H 1.09004 * 109.47370 * 299.99993 * 1 2 3 25 25 H 1.09005 * 109.47420 * 59.99595 * 1 2 3 26 26 H 1.09004 * 109.47555 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46830 * 240.00484 * 2 1 3 28 28 H 1.09002 * 109.47080 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47422 * 299.99867 * 3 2 1 30 30 H 1.09000 * 109.46958 * 60.00563 * 3 2 1 31 31 H 1.09000 * 109.47296 * 304.99808 * 4 2 1 32 32 H 1.08995 * 109.47418 * 184.99571 * 4 2 1 33 33 H 1.08998 * 109.47082 * 299.99784 * 7 5 4 34 34 H 1.09002 * 109.47136 * 59.99909 * 7 5 4 35 35 H 1.09005 * 109.46590 * 179.97438 * 7 5 4 36 36 H 0.97003 * 120.00020 * 0.02562 * 10 8 5 37 37 H 1.07997 * 125.80177 * 0.02562 * 12 11 10 38 38 H 0.96998 * 120.00233 * 180.02562 * 18 17 15 39 39 H 1.07997 * 126.24694 * 0.03480 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 -2.1956 1.1878 6 1 0.5562 -2.2707 1.0526 7 6 2.3448 -2.8708 0.0124 8 6 2.0294 -2.8785 2.4720 9 8 2.5795 -2.2480 3.3502 10 7 1.7697 -4.1896 2.6452 11 6 2.1370 -4.8267 3.8435 12 6 2.7772 -4.2225 4.9404 13 7 2.9492 -5.1291 5.8689 14 7 2.4370 -6.3454 5.3997 15 6 2.4331 -7.5377 6.0810 16 1 1.9222 -8.3944 5.6672 17 6 3.0821 -7.6404 7.3058 18 7 3.6043 -6.5726 7.8635 19 14 3.2115 -9.2974 8.1583 20 1 4.5111 -9.9296 7.8170 21 1 3.1251 -9.1058 9.6284 22 1 2.1009 -10.1741 7.7074 23 6 1.9368 -6.1339 4.1475 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9562 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1262 -0.6445 1.2950 33 1 2.0597 -2.3768 -0.9164 34 1 3.4238 -2.7955 0.1477 35 1 2.0567 -3.9212 -0.0310 36 1 1.3294 -4.6938 1.9431 37 1 3.0719 -3.1857 5.0074 38 1 4.0575 -6.6442 8.7181 39 1 1.4679 -6.8722 3.5140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765430819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:52 Heat of formation + Delta-G solvation = 20.749995 kcal Electronic energy + Delta-G solvation = -19806.476627 eV Core-core repulsion = 16750.276964 eV Total energy + Delta-G solvation = -3056.199663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00020 -38.90082 -36.79458 -34.14956 -33.24599 -32.43426 -30.16921 -27.73132 -27.29547 -26.63057 -25.02423 -23.44225 -20.96210 -20.25209 -19.37682 -19.16115 -17.45138 -16.50601 -15.73217 -15.41756 -15.09091 -14.76208 -14.17578 -14.01874 -13.62040 -13.47439 -13.07650 -12.95856 -12.86448 -12.39292 -12.26896 -11.94307 -11.65511 -11.53673 -11.36506 -11.29765 -11.21775 -10.89612 -10.71552 -10.54549 -10.50636 -10.49107 -10.07537 -9.12631 -8.99895 -8.75355 -8.01572 -6.64424 -6.53154 -4.19522 2.89600 3.06387 3.09082 3.11870 3.66735 3.72620 3.91876 4.46800 4.68358 4.69597 4.81273 4.91171 5.03921 5.10061 5.17054 5.23315 5.45884 5.50244 5.53282 5.68584 5.71150 5.83876 5.85713 5.95616 6.02632 6.06379 6.15075 6.28107 6.35992 6.43220 6.52469 6.95895 7.01536 7.18877 7.29882 7.89945 8.25094 8.35281 8.68511 8.95477 9.42197 9.71379 10.43215 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.057977 B = 0.003459 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.835768 B = 8093.970609 C = 8351.338452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.094 4.094 5 C -0.108 4.108 6 H 0.094 0.906 7 C -0.145 4.145 8 C 0.501 3.499 9 O -0.537 6.537 10 N -0.626 5.626 11 C -0.058 4.058 12 C -0.034 4.034 13 N -0.261 5.261 14 N -0.144 5.144 15 C -0.324 4.324 16 H 0.116 0.884 17 C 0.046 3.954 18 N -0.770 5.770 19 Si 0.934 3.066 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.085 4.085 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.395 0.605 37 H 0.175 0.825 38 H 0.274 0.726 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 6.907 -15.141 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.132 4.132 5 C -0.129 4.129 6 H 0.112 0.888 7 C -0.202 4.202 8 C 0.287 3.713 9 O -0.414 6.414 10 N -0.269 5.269 11 C -0.164 4.164 12 C -0.210 4.210 13 N -0.092 5.092 14 N 0.088 4.912 15 C -0.457 4.457 16 H 0.133 0.867 17 C -0.171 4.171 18 N -0.397 5.397 19 Si 0.758 3.242 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.235 4.235 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.228 0.772 37 H 0.192 0.808 38 H 0.085 0.915 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.961 7.202 -13.118 15.480 hybrid contribution -0.571 -0.947 -0.860 1.401 sum -4.532 6.255 -13.978 15.971 Atomic orbital electron populations 1.21915 0.95472 1.01788 1.01576 1.21198 0.95773 0.96197 0.98628 1.21824 1.01034 0.96020 1.01526 1.21441 1.01725 0.92348 0.97703 1.21315 1.01849 0.96473 0.93312 0.88816 1.21834 1.01139 1.00240 0.97026 1.20437 0.80215 0.81711 0.88937 1.90580 1.42543 1.64476 1.43836 1.42575 1.58491 1.09260 1.16528 1.17322 1.16443 0.92323 0.90310 1.24105 1.04798 1.00345 0.91749 1.78232 1.22270 0.88467 1.20273 1.44535 1.32041 1.07074 1.07580 1.19860 1.36359 0.86201 1.03242 0.86683 1.25638 0.95486 0.99238 0.96711 1.70227 1.26485 1.27974 1.15019 0.85821 0.79287 0.80443 0.78636 1.19668 1.20125 1.18817 1.21267 1.14547 0.95956 0.91776 0.92612 0.93037 0.92468 0.91018 0.92686 0.92987 0.92647 0.90996 0.91265 0.91583 0.92036 0.92290 0.77187 0.80776 0.91524 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.95 37.16 0.33 -0.93 16 2 C -0.10 -0.90 2.78 -90.63 -0.25 -1.15 16 3 C -0.15 -1.25 9.19 37.15 0.34 -0.91 16 4 C -0.09 -1.12 3.50 -26.73 -0.09 -1.21 16 5 C -0.11 -1.31 2.59 -91.77 -0.24 -1.54 16 6 H 0.09 0.98 6.34 -51.93 -0.33 0.65 16 7 C -0.14 -1.44 8.85 37.16 0.33 -1.12 16 8 C 0.50 8.82 7.12 -10.99 -0.08 8.74 16 9 O -0.54 -11.72 13.07 5.54 0.07 -11.65 16 10 N -0.63 -11.32 5.36 -10.00 -0.05 -11.38 16 11 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 12 C -0.03 -0.93 10.85 -17.04 -0.18 -1.12 16 13 N -0.26 -7.77 10.42 30.80 0.32 -7.45 16 14 N -0.14 -4.04 3.74 -11.41 -0.04 -4.08 16 15 C -0.32 -8.73 10.24 -14.81 -0.15 -8.88 16 16 H 0.12 2.77 7.84 -52.49 -0.41 2.35 16 17 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 18 N -0.77 -21.87 11.84 55.50 0.66 -21.21 16 19 Si 0.93 19.17 29.56 -169.99 -5.02 14.15 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.08 -2.03 11.49 -16.39 -0.19 -2.22 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.46 6.46 -51.93 -0.34 0.12 16 27 H 0.07 0.60 6.34 -51.93 -0.33 0.27 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.52 6.46 -51.93 -0.34 0.19 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 36 H 0.40 5.54 8.24 -40.82 -0.34 5.21 16 37 H 0.18 4.69 5.92 -52.49 -0.31 4.38 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.14 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -33.29 319.77 -5.82 -39.11 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.71 Total: 8.86 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.86 Total: -11.18 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.88 Total: -44.11 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.29 -5.82 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765430819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.857 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds