Wall clock time and date at job start Mon Mar 30 2020 06:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.46951 * 2 1 4 4 C 1.52994 * 109.47226 * 120.00316 * 2 1 3 5 5 C 1.53008 * 109.47085 * 64.99828 * 4 2 1 6 6 H 1.08997 * 109.46871 * 304.99875 * 5 4 2 7 7 C 1.53003 * 109.46946 * 65.00062 * 5 4 2 8 8 C 1.50696 * 109.46831 * 184.99747 * 5 4 2 9 9 O 1.21297 * 120.00357 * 0.02562 * 8 5 4 10 10 N 1.34779 * 120.00001 * 179.97438 * 8 5 4 11 11 C 1.40588 * 120.00316 * 180.02562 * 10 8 5 12 12 C 1.40654 * 126.08389 * 0.02562 * 11 10 8 13 13 N 1.30905 * 108.38683 * 179.72009 * 12 11 10 14 14 N 1.40064 * 108.40777 * 0.43987 * 13 12 11 15 15 C 1.37321 * 126.06857 * 179.82149 * 14 13 12 16 16 H 1.07998 * 120.00111 * 173.76490 * 15 14 13 17 17 C 1.38990 * 120.00353 * 354.03771 * 15 14 13 18 18 N 1.31294 * 119.99607 * 5.58222 * 17 15 14 19 19 Si 1.86794 * 120.00402 * 185.58712 * 17 15 14 20 20 H 1.48500 * 109.47486 * 94.97709 * 19 17 15 21 21 H 1.48508 * 109.47057 * 214.97869 * 19 17 15 22 22 H 1.48506 * 109.47163 * 334.97268 * 19 17 15 23 23 C 1.35688 * 126.08302 * 180.02562 * 11 10 8 24 24 H 1.09004 * 109.47370 * 299.99993 * 1 2 3 25 25 H 1.09005 * 109.47420 * 59.99595 * 1 2 3 26 26 H 1.09004 * 109.47555 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46830 * 240.00484 * 2 1 3 28 28 H 1.09002 * 109.47080 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47422 * 299.99867 * 3 2 1 30 30 H 1.09000 * 109.46958 * 60.00563 * 3 2 1 31 31 H 1.09000 * 109.47296 * 304.99808 * 4 2 1 32 32 H 1.08995 * 109.47418 * 184.99571 * 4 2 1 33 33 H 1.08998 * 109.47082 * 299.99784 * 7 5 4 34 34 H 1.09002 * 109.47136 * 59.99909 * 7 5 4 35 35 H 1.09005 * 109.46590 * 179.97438 * 7 5 4 36 36 H 0.97003 * 120.00020 * 0.02562 * 10 8 5 37 37 H 1.07997 * 125.80177 * 0.02562 * 12 11 10 38 38 H 0.96998 * 120.00233 * 180.02562 * 18 17 15 39 39 H 1.07997 * 126.24694 * 0.03480 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 -2.1956 1.1878 6 1 0.5562 -2.2707 1.0526 7 6 2.3448 -2.8708 0.0124 8 6 2.0294 -2.8785 2.4720 9 8 2.5795 -2.2480 3.3502 10 7 1.7697 -4.1896 2.6452 11 6 2.1370 -4.8267 3.8435 12 6 2.7772 -4.2225 4.9404 13 7 2.9492 -5.1291 5.8689 14 7 2.4370 -6.3454 5.3997 15 6 2.4331 -7.5377 6.0810 16 1 1.9222 -8.3944 5.6672 17 6 3.0821 -7.6404 7.3058 18 7 3.6043 -6.5726 7.8635 19 14 3.2115 -9.2974 8.1583 20 1 4.5111 -9.9296 7.8170 21 1 3.1251 -9.1058 9.6284 22 1 2.1009 -10.1741 7.7074 23 6 1.9368 -6.1339 4.1475 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9562 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1262 -0.6445 1.2950 33 1 2.0597 -2.3768 -0.9164 34 1 3.4238 -2.7955 0.1477 35 1 2.0567 -3.9212 -0.0310 36 1 1.3294 -4.6938 1.9431 37 1 3.0719 -3.1857 5.0074 38 1 4.0575 -6.6442 8.7181 39 1 1.4679 -6.8722 3.5140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765430819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:51 Heat of formation + Delta-G solvation = -1.107017 kcal Electronic energy + Delta-G solvation = -19807.424418 eV Core-core repulsion = 16750.276964 eV Total energy + Delta-G solvation = -3057.147454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74616 -40.51247 -37.80461 -35.90116 -35.00474 -33.49134 -32.18744 -29.58562 -27.95370 -27.50195 -26.91219 -24.70880 -22.83712 -21.65551 -21.10701 -20.20803 -19.27083 -17.91213 -17.39766 -16.98534 -16.48069 -16.00633 -15.70817 -15.32737 -15.02595 -14.87655 -14.58494 -14.22006 -13.99337 -13.50215 -13.32199 -13.16604 -13.09284 -12.96403 -12.78923 -12.71351 -12.29550 -12.11745 -12.06605 -11.80368 -11.54825 -11.36789 -11.31175 -11.00586 -10.82265 -10.48146 -10.10002 -8.51372 -8.47245 -6.24388 1.23243 1.39630 1.55876 1.58174 1.88329 2.07130 2.35365 2.54040 2.93527 3.08110 3.77365 3.83472 3.98366 4.21270 4.30676 4.43110 4.44122 4.50606 4.63303 4.76502 4.84653 4.92637 4.96621 5.00721 5.05967 5.09438 5.12598 5.17694 5.27863 5.29704 5.32010 5.39010 5.50323 5.56399 5.62947 5.96518 6.32845 6.74101 6.81151 7.44347 7.49521 7.69052 8.52405 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.057977 B = 0.003459 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.835768 B = 8093.970609 C = 8351.338452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.093 4.093 5 C -0.094 4.094 6 H 0.122 0.878 7 C -0.142 4.142 8 C 0.495 3.505 9 O -0.583 6.583 10 N -0.617 5.617 11 C -0.044 4.044 12 C -0.063 4.063 13 N -0.312 5.312 14 N -0.169 5.169 15 C -0.355 4.355 16 H 0.141 0.859 17 C -0.008 4.008 18 N -0.826 5.826 19 Si 1.021 2.979 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.242 1.242 23 C -0.081 4.081 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.419 0.581 37 H 0.164 0.836 38 H 0.276 0.724 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.449 5.398 -17.904 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.131 4.131 5 C -0.115 4.115 6 H 0.139 0.861 7 C -0.199 4.199 8 C 0.284 3.716 9 O -0.463 6.463 10 N -0.263 5.263 11 C -0.150 4.150 12 C -0.238 4.238 13 N -0.144 5.144 14 N 0.062 4.938 15 C -0.486 4.486 16 H 0.159 0.841 17 C -0.219 4.219 18 N -0.454 5.454 19 Si 0.839 3.161 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.165 1.165 23 C -0.232 4.232 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.256 0.744 37 H 0.181 0.819 38 H 0.086 0.914 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.513 5.699 -15.951 17.813 hybrid contribution -0.123 -0.350 -0.101 0.385 sum -5.636 5.349 -16.052 17.834 Atomic orbital electron populations 1.21927 0.94593 1.02382 1.01887 1.21166 0.96403 0.96097 0.97368 1.21843 1.00867 0.95941 1.01929 1.21428 1.00565 0.92644 0.98478 1.21353 1.03604 0.95779 0.90774 0.86078 1.21868 0.99914 1.01224 0.96928 1.21616 0.78552 0.81232 0.90206 1.90570 1.44354 1.65446 1.45960 1.42561 1.58642 1.09682 1.15365 1.17418 1.14286 0.92188 0.91154 1.24134 1.06455 0.99924 0.93332 1.78128 1.24201 0.89925 1.22151 1.44848 1.33058 1.06904 1.09034 1.20632 1.37226 0.86639 1.04104 0.84130 1.26914 0.94245 1.03607 0.97143 1.70411 1.28113 1.31102 1.15771 0.84560 0.79913 0.74805 0.76794 1.19158 1.20185 1.16454 1.22017 1.13226 0.96912 0.90996 0.93670 0.91444 0.91713 0.89264 0.93059 0.91273 0.93567 0.93427 0.93053 0.88523 0.93534 0.90903 0.74406 0.81885 0.91433 0.79423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.95 71.98 0.64 -1.44 16 2 C -0.09 -1.45 2.78 -10.80 -0.03 -1.48 16 3 C -0.15 -2.31 9.19 71.98 0.66 -1.65 16 4 C -0.09 -2.15 3.50 30.59 0.11 -2.04 16 5 C -0.09 -2.08 2.59 -11.54 -0.03 -2.11 16 6 H 0.12 2.09 6.34 -2.39 -0.02 2.07 16 7 C -0.14 -2.36 8.85 71.98 0.64 -1.72 16 8 C 0.50 17.20 7.12 87.66 0.62 17.83 16 9 O -0.58 -26.39 13.07 -3.08 -0.04 -26.43 16 10 N -0.62 -21.43 5.36 -303.93 -1.63 -23.06 16 11 C -0.04 -2.08 6.90 37.73 0.26 -1.82 16 12 C -0.06 -3.58 10.85 85.42 0.93 -2.65 16 13 N -0.31 -19.35 10.42 -56.47 -0.59 -19.94 16 14 N -0.17 -9.59 3.74 -190.01 -0.71 -10.30 16 15 C -0.36 -19.08 10.24 84.01 0.86 -18.22 16 16 H 0.14 6.52 7.84 -2.91 -0.02 6.50 16 17 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 18 N -0.83 -48.61 11.84 21.66 0.26 -48.36 16 19 Si 1.02 39.07 29.56 68.60 2.03 41.10 16 20 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 21 H -0.28 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.24 -8.28 7.11 99.48 0.71 -7.58 16 23 C -0.08 -3.82 11.49 83.38 0.96 -2.87 16 24 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.06 0.80 6.46 -2.39 -0.02 0.78 16 27 H 0.09 1.13 6.34 -2.39 -0.02 1.12 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 1.32 7.95 -2.39 -0.02 1.30 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.07 6.46 -2.39 -0.02 1.05 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.03 7.56 -2.38 -0.02 1.01 16 36 H 0.42 10.42 8.24 -92.71 -0.76 9.66 16 37 H 0.16 9.40 5.92 -2.91 -0.02 9.38 16 38 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 Total: -1.00 -77.38 319.77 5.69 -71.69 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.29 Total: 33.41 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 6.09 Total: -18.11 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -2.67 Total: -101.66 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.04 Total: -26.43 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -77.38 5.69 -71.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765430819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.580 kcal (2) G-P(sol) polarization free energy of solvation -77.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds