Wall clock time and date at job start Mon Mar 30 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21303 * 120.00017 * 239.99853 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.40764 * 120.00253 * 179.97438 * 14 12 2 16 16 C 1.40255 * 126.07907 * 0.02562 * 15 14 12 17 17 N 1.30835 * 108.33172 * 179.97438 * 16 15 14 18 18 N 1.40067 * 108.37242 * 0.02562 * 17 16 15 19 19 C 1.46494 * 126.05598 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47254 * 254.97885 * 19 18 17 21 21 C 1.53007 * 109.46799 * 14.97018 * 19 18 17 22 22 C 1.52990 * 109.47453 * 134.97342 * 19 18 17 23 23 C 1.35753 * 126.07951 * 179.71572 * 15 14 12 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 1.07995 * 125.83112 * 359.94482 * 16 15 14 30 30 H 1.09002 * 109.47560 * 59.99103 * 20 19 18 31 31 H 1.08998 * 109.47208 * 179.97438 * 20 19 18 32 32 H 1.09006 * 109.46450 * 299.99493 * 20 19 18 33 33 H 1.08998 * 109.47028 * 60.00563 * 21 19 18 34 34 H 1.08998 * 109.46920 * 180.02562 * 21 19 18 35 35 H 1.08995 * 109.47691 * 300.00242 * 21 19 18 36 36 H 1.08999 * 109.47402 * 60.00259 * 22 19 18 37 37 H 1.08998 * 109.47378 * 180.02562 * 22 19 18 38 38 H 1.08998 * 109.47199 * 299.99941 * 22 19 18 39 39 H 1.07999 * 126.21950 * 0.03487 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7297 -1.6966 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1763 -0.9130 -3.6040 16 6 2.9861 -2.0580 -3.6240 17 7 3.2134 -2.3794 -4.8717 18 7 2.5587 -1.4525 -5.6928 19 6 2.5559 -1.4491 -7.1577 20 6 3.4774 -0.3389 -7.6669 21 6 3.0544 -2.8013 -7.6717 22 6 1.1334 -1.2038 -7.6645 23 6 1.9212 -0.5614 -4.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 3.3586 -2.5841 -2.7576 30 1 4.4909 -0.5137 -7.3058 31 1 3.4757 -0.3367 -8.7569 32 1 3.1222 0.6244 -7.3007 33 1 2.3980 -3.5923 -7.3090 34 1 3.0528 -2.7987 -8.7617 35 1 4.0679 -2.9762 -7.3107 36 1 0.7783 -0.2405 -7.2983 37 1 1.1313 -1.2017 -8.7545 38 1 0.4770 -1.9947 -7.3018 39 1 1.3227 0.2765 -5.2160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824348831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:43 Heat of formation + Delta-G solvation = 32.507127 kcal Electronic energy + Delta-G solvation = -20056.910926 eV Core-core repulsion = 17001.221090 eV Total energy + Delta-G solvation = -3055.689835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11137 -38.78252 -36.74450 -33.80569 -33.76715 -30.58208 -30.33486 -28.37855 -27.69208 -27.32099 -25.14143 -23.06553 -22.39925 -20.50062 -20.01132 -18.49126 -17.18532 -16.24665 -15.95445 -15.28823 -15.22122 -14.51947 -14.33307 -14.24846 -13.88491 -13.51505 -13.03456 -12.73883 -12.55360 -12.46638 -12.35628 -12.30963 -12.02175 -11.60098 -11.41625 -11.35422 -11.00831 -10.75429 -10.65857 -10.42379 -10.36689 -10.06720 -9.95963 -9.08115 -8.98511 -8.62275 -8.32860 -7.25323 -6.03323 -4.06356 2.05981 2.53772 3.05700 3.35245 3.40912 3.47949 3.90719 3.93239 4.32437 4.48913 4.53119 4.63268 4.91874 5.17275 5.18463 5.30398 5.31632 5.38090 5.46235 5.54120 5.56378 5.71073 5.83954 5.88829 5.92927 6.11354 6.23710 6.60233 6.71250 6.81603 6.91532 7.21640 7.40900 7.47638 7.74567 7.94528 8.01221 8.14774 8.41927 9.02686 9.17749 9.59272 11.04417 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.046386 B = 0.003849 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.486985 B = 7272.149914 C = 7616.946416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.501 4.501 5 H 0.076 0.924 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.287 1.287 12 C 0.521 3.479 13 O -0.532 6.532 14 N -0.661 5.661 15 C 0.024 3.976 16 C 0.047 3.953 17 N -0.289 5.289 18 N -0.369 5.369 19 C 0.188 3.812 20 C -0.159 4.159 21 C -0.143 4.143 22 C -0.159 4.159 23 C -0.006 4.006 24 H 0.032 0.968 25 H 0.094 0.906 26 H 0.012 0.988 27 H 0.261 0.739 28 H 0.405 0.595 29 H 0.205 0.795 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 0.186 -20.576 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.539 4.539 5 H 0.094 0.906 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.213 1.213 12 C 0.312 3.688 13 O -0.407 6.407 14 N -0.307 5.307 15 C -0.081 4.081 16 C -0.141 4.141 17 N -0.111 5.111 18 N -0.157 5.157 19 C 0.105 3.895 20 C -0.217 4.217 21 C -0.201 4.201 22 C -0.217 4.217 23 C -0.152 4.152 24 H 0.051 0.949 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.239 0.761 29 H 0.222 0.778 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.469 -1.216 -21.189 21.229 hybrid contribution -0.550 0.765 1.347 1.644 sum -0.080 -0.451 -19.842 19.848 Atomic orbital electron populations 1.21766 0.96398 0.99980 1.01014 1.18875 0.94204 0.96895 0.88894 0.92730 1.21138 1.31061 1.12856 0.88874 0.90621 1.24947 0.95101 0.95038 0.99138 1.69869 1.37141 1.23061 1.23575 0.86438 0.79494 0.79224 0.81992 1.20672 1.19682 1.21330 1.22141 0.78411 0.84335 0.83900 1.90405 1.37489 1.26654 1.86129 1.43463 1.52708 1.30892 1.03653 1.17993 1.04975 0.98454 0.86726 1.24593 0.98215 0.96073 0.95186 1.77270 1.18938 1.13578 1.01302 1.48471 1.40235 1.21934 1.05030 1.20550 0.96558 0.97697 0.74692 1.22263 1.00056 0.97904 1.01493 1.21897 1.03047 0.94674 1.00450 1.22229 0.94629 1.02957 1.01866 1.21642 1.04739 0.99343 0.89509 0.94861 0.88710 0.96900 0.92947 0.76070 0.77826 0.91641 0.90755 0.91864 0.91651 0.91263 0.90999 0.91651 0.90445 0.91532 0.81531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.87 37.16 0.33 -2.68 16 2 C 0.03 0.80 2.64 -92.93 -0.25 0.55 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.04 8.37 -34.44 -0.29 -14.33 16 5 H 0.08 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.95 11.32 55.43 0.63 -24.33 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.52 11.81 7.12 -10.99 -0.08 11.73 16 13 O -0.53 -13.46 12.62 5.54 0.07 -13.39 16 14 N -0.66 -11.95 5.37 -10.04 -0.05 -12.00 16 15 C 0.02 0.41 6.90 -83.88 -0.58 -0.17 16 16 C 0.05 0.88 10.84 -17.22 -0.19 0.69 16 17 N -0.29 -4.94 11.65 30.70 0.36 -4.58 16 18 N -0.37 -5.10 3.45 -48.33 -0.17 -5.27 16 19 C 0.19 1.85 1.24 -131.82 -0.16 1.69 16 20 C -0.16 -1.31 8.74 37.16 0.32 -0.99 16 21 C -0.14 -1.33 8.09 37.16 0.30 -1.03 16 22 C -0.16 -1.20 8.29 37.15 0.31 -0.90 16 23 C -0.01 -0.08 10.67 -16.68 -0.18 -0.26 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.40 6.06 8.24 -40.82 -0.34 5.73 16 29 H 0.21 4.22 5.92 -52.49 -0.31 3.91 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 36 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.17 1.71 7.57 -52.49 -0.40 1.32 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -31.64 321.45 -5.74 -37.38 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.85 Total: 4.83 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.55 Total: -4.19 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.76 Total: -46.18 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.07 Total: -13.39 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.64 -5.74 -37.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824348831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.884 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds