Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21303 * 120.00017 * 239.99853 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.40764 * 120.00253 * 179.97438 * 14 12 2 16 16 C 1.40255 * 126.07907 * 0.02562 * 15 14 12 17 17 N 1.30835 * 108.33172 * 179.97438 * 16 15 14 18 18 N 1.40067 * 108.37242 * 0.02562 * 17 16 15 19 19 C 1.46494 * 126.05598 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47254 * 254.97885 * 19 18 17 21 21 C 1.53007 * 109.46799 * 14.97018 * 19 18 17 22 22 C 1.52990 * 109.47453 * 134.97342 * 19 18 17 23 23 C 1.35753 * 126.07951 * 179.71572 * 15 14 12 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 1.07995 * 125.83112 * 359.94482 * 16 15 14 30 30 H 1.09002 * 109.47560 * 59.99103 * 20 19 18 31 31 H 1.08998 * 109.47208 * 179.97438 * 20 19 18 32 32 H 1.09006 * 109.46450 * 299.99493 * 20 19 18 33 33 H 1.08998 * 109.47028 * 60.00563 * 21 19 18 34 34 H 1.08998 * 109.46920 * 180.02562 * 21 19 18 35 35 H 1.08995 * 109.47691 * 300.00242 * 21 19 18 36 36 H 1.08999 * 109.47402 * 60.00259 * 22 19 18 37 37 H 1.08998 * 109.47378 * 180.02562 * 22 19 18 38 38 H 1.08998 * 109.47199 * 299.99941 * 22 19 18 39 39 H 1.07999 * 126.21950 * 0.03487 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7297 -1.6966 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1763 -0.9130 -3.6040 16 6 2.9861 -2.0580 -3.6240 17 7 3.2134 -2.3794 -4.8717 18 7 2.5587 -1.4525 -5.6928 19 6 2.5559 -1.4491 -7.1577 20 6 3.4774 -0.3389 -7.6669 21 6 3.0544 -2.8013 -7.6717 22 6 1.1334 -1.2038 -7.6645 23 6 1.9212 -0.5614 -4.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 3.3586 -2.5841 -2.7576 30 1 4.4909 -0.5137 -7.3058 31 1 3.4757 -0.3367 -8.7569 32 1 3.1222 0.6244 -7.3007 33 1 2.3980 -3.5923 -7.3090 34 1 3.0528 -2.7987 -8.7617 35 1 4.0679 -2.9762 -7.3107 36 1 0.7783 -0.2405 -7.2983 37 1 1.1313 -1.2017 -8.7545 38 1 0.4770 -1.9947 -7.3018 39 1 1.3227 0.2765 -5.2160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824348831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = 11.718115 kcal Electronic energy + Delta-G solvation = -20057.812405 eV Core-core repulsion = 17001.221090 eV Total energy + Delta-G solvation = -3056.591314 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.36325 -40.41772 -37.68222 -35.77061 -35.35673 -32.52705 -31.52053 -29.60658 -28.30282 -28.15468 -27.17645 -24.77074 -23.64489 -22.01571 -21.29323 -19.82894 -18.55424 -18.10003 -17.45914 -16.71283 -16.39747 -16.32096 -15.76375 -15.37304 -14.95484 -14.74467 -14.63997 -14.37351 -13.78400 -13.50435 -13.18031 -13.14721 -13.09513 -12.93006 -12.70743 -12.68776 -12.54715 -12.29400 -12.18580 -12.15201 -11.99700 -11.58510 -11.57926 -11.02539 -10.57962 -10.27971 -10.27358 -8.60592 -8.13822 -6.23424 0.84885 1.42099 1.42892 1.48753 1.53231 1.55254 2.31141 2.37071 2.54949 3.16349 3.52117 3.82084 3.89172 3.93763 4.12973 4.32428 4.53747 4.63463 4.65793 4.71552 4.75167 4.78224 4.85472 4.87480 4.88434 4.96509 5.04940 5.12995 5.22190 5.28993 5.36701 5.51968 5.76066 5.90056 5.99128 6.20678 6.23347 6.64114 6.80205 6.89631 7.41414 7.54495 8.92098 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.046386 B = 0.003849 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.486985 B = 7272.149914 C = 7616.946416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.030 3.970 3 H 0.047 0.953 4 C -0.529 4.529 5 H 0.049 0.951 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.520 3.480 13 O -0.570 6.570 14 N -0.639 5.639 15 C -0.017 4.017 16 C 0.018 3.982 17 N -0.307 5.307 18 N -0.356 5.356 19 C 0.172 3.828 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.154 4.154 23 C 0.032 3.968 24 H 0.021 0.979 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.265 0.735 28 H 0.421 0.579 29 H 0.175 0.825 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 1.605 -23.291 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 H 0.064 0.936 4 C -0.567 4.567 5 H 0.068 0.932 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.310 3.690 13 O -0.448 6.448 14 N -0.286 5.286 15 C -0.121 4.121 16 C -0.168 4.168 17 N -0.130 5.130 18 N -0.142 5.142 19 C 0.091 3.909 20 C -0.213 4.213 21 C -0.200 4.200 22 C -0.212 4.212 23 C -0.117 4.117 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.259 0.741 29 H 0.192 0.808 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.724 0.222 -23.959 23.971 hybrid contribution -0.170 0.334 1.970 2.006 sum -0.893 0.556 -21.988 22.014 Atomic orbital electron populations 1.21581 0.94821 0.99491 1.01981 1.18785 0.95433 0.96029 0.88900 0.93552 1.21292 1.31603 1.12759 0.91053 0.93235 1.25558 0.95220 0.95728 1.01307 1.69940 1.37233 1.23482 1.24301 0.85617 0.78617 0.78541 0.79239 1.20060 1.20461 1.19979 1.21718 0.78408 0.83932 0.84945 1.90409 1.39255 1.28253 1.86859 1.42950 1.52081 1.30957 1.02613 1.18128 1.07141 0.99209 0.87613 1.24242 0.99919 0.97382 0.95210 1.77224 1.19947 1.14881 1.00991 1.49077 1.38088 1.20464 1.06616 1.21153 0.98984 0.98638 0.72094 1.22262 0.98289 0.97204 1.03504 1.21920 1.01350 0.94079 1.02603 1.22253 0.92112 1.03092 1.03785 1.22263 1.02461 0.99051 0.87899 0.95951 0.90907 0.92619 0.92588 0.74094 0.80834 0.93640 0.87523 0.91151 0.93211 0.87774 0.93024 0.90378 0.87396 0.92774 0.76826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.87 71.98 0.64 -4.77 16 2 C 0.03 1.49 2.64 -12.29 -0.03 1.46 16 3 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.53 -30.64 8.37 25.60 0.21 -30.42 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -50.82 11.32 21.45 0.24 -50.57 16 8 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 9 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.52 24.17 7.12 87.66 0.62 24.80 16 13 O -0.57 -30.48 12.62 -3.10 -0.04 -30.52 16 14 N -0.64 -22.72 5.37 -304.05 -1.63 -24.35 16 15 C -0.02 -0.57 6.90 37.62 0.26 -0.31 16 16 C 0.02 0.71 10.84 85.33 0.92 1.63 16 17 N -0.31 -10.64 11.65 -56.77 -0.66 -11.30 16 18 N -0.36 -9.14 3.45 -306.80 -1.06 -10.20 16 19 C 0.17 2.83 1.24 3.60 0.00 2.84 16 20 C -0.15 -1.97 8.74 71.98 0.63 -1.34 16 21 C -0.14 -2.35 8.09 71.98 0.58 -1.77 16 22 C -0.15 -1.64 8.29 71.98 0.60 -1.04 16 23 C 0.03 0.79 10.67 83.50 0.89 1.68 16 24 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 26 H 0.05 1.96 7.57 -2.38 -0.02 1.94 16 27 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.42 11.70 8.24 -92.70 -0.76 10.93 16 29 H 0.17 7.86 5.92 -2.91 -0.02 7.84 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 1.07 8.04 -2.39 -0.02 1.05 16 36 H 0.08 0.66 7.38 -2.39 -0.02 0.64 16 37 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.22 3.19 7.57 -2.91 -0.02 3.17 16 Total: -1.00 -72.50 321.45 4.94 -67.56 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.28 Total: 17.79 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 5.78 Total: -5.62 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -3.11 Total: -96.42 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.04 Total: -30.52 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -72.50 4.94 -67.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824348831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.280 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds