Wall clock time and date at job start Mon Mar 30 2020 08:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53236 * 108.53353 * 231.61797 * 3 2 1 5 5 C 1.52954 * 109.40515 * 305.37271 * 4 3 2 6 6 C 1.52998 * 109.41554 * 183.70552 * 5 4 3 7 7 N 1.46495 * 109.47262 * 64.64504 * 6 5 4 8 8 C 1.34776 * 120.00353 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99928 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00510 * 180.02562 * 8 7 6 11 11 C 1.52995 * 109.47609 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47482 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47260 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00249 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99782 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00389 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47470 * 120.00083 * 17 15 13 20 20 H 1.48502 * 109.47344 * 239.99992 * 17 15 13 21 21 C 1.52962 * 109.81860 * 63.59882 * 5 4 3 22 22 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 23 23 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 24 24 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 25 25 H 1.08996 * 109.62853 * 351.32771 * 3 2 1 26 26 H 1.08994 * 109.62831 * 111.90784 * 3 2 1 27 27 H 1.09002 * 109.48366 * 185.39419 * 4 3 2 28 28 H 1.09001 * 109.48205 * 65.35438 * 4 3 2 29 29 H 1.09007 * 109.41410 * 303.49063 * 5 4 3 30 30 H 1.09004 * 109.47531 * 184.64460 * 6 5 4 31 31 H 1.09004 * 109.46854 * 304.64828 * 6 5 4 32 32 H 0.97005 * 120.00280 * 0.02562 * 7 6 5 33 33 H 1.09004 * 109.46585 * 299.99875 * 10 8 7 34 34 H 1.09001 * 109.47245 * 59.99286 * 10 8 7 35 35 H 1.09004 * 109.46846 * 300.00107 * 11 10 8 36 36 H 1.09001 * 109.47264 * 59.99464 * 11 10 8 37 37 H 1.08994 * 109.46982 * 300.00194 * 12 11 10 38 38 H 1.09004 * 109.46706 * 60.00166 * 12 11 10 39 39 H 0.96996 * 120.00061 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.48320 * 176.42559 * 21 5 4 41 41 H 1.08997 * 109.49150 * 56.38933 * 21 5 4 42 42 H 1.08997 * 109.62461 * 248.09547 * 22 2 1 43 43 H 1.08996 * 109.62473 * 8.47434 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1099 1.2542 -1.1389 5 6 3.9767 0.0023 -0.9943 6 6 5.0584 0.0048 -2.0764 7 7 5.9614 1.1381 -1.8615 8 6 6.9974 1.3426 -2.6991 9 8 7.1822 0.5880 -3.6304 10 6 7.9268 2.5080 -2.4777 11 6 9.0083 2.5107 -3.5598 12 6 9.9515 3.6943 -3.3355 13 6 11.0171 3.6965 -4.4010 14 1 11.0210 2.9306 -5.1623 15 6 11.9871 4.6763 -4.4039 16 7 11.9826 5.6088 -3.4765 17 14 13.3076 4.6795 -5.7251 18 1 13.0920 3.5324 -6.6432 19 1 13.2368 5.9487 -6.4928 20 1 14.6443 4.5596 -5.0893 21 6 3.1098 -1.2489 -1.1449 22 6 2.0857 -1.2987 -0.0062 23 1 -0.5400 -0.9354 -0.0046 24 1 -0.5399 0.9352 0.0045 25 1 1.4021 2.1334 -0.1548 26 1 2.6023 1.4165 0.9525 27 1 3.7420 2.1411 -1.0942 28 1 2.5886 1.2269 -2.0958 29 1 4.4488 -0.0001 -0.0117 30 1 5.6245 -0.9254 -2.0265 31 1 4.5909 0.0936 -3.0571 32 1 5.8139 1.7415 -1.1164 33 1 7.3608 3.4384 -2.5269 34 1 8.3945 2.4187 -1.4972 35 1 9.5741 1.5803 -3.5103 36 1 8.5409 2.5998 -4.5405 37 1 9.3854 4.6244 -3.3853 38 1 10.4190 3.6055 -2.3548 39 1 12.6648 6.2984 -3.4787 40 1 3.7418 -2.1361 -1.1044 41 1 2.5886 -1.2173 -2.1016 42 1 2.6023 -1.4212 0.9457 43 1 1.4017 -2.1330 -0.1615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830985602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:29 Heat of formation + Delta-G solvation = -67.132554 kcal Electronic energy + Delta-G solvation = -19360.663366 eV Core-core repulsion = 16404.193173 eV Total energy + Delta-G solvation = -2956.470193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.81408 -38.76146 -35.28340 -34.12454 -32.72057 -31.93825 -31.41574 -28.65698 -27.26953 -24.42774 -23.52110 -23.07365 -20.86486 -20.55222 -19.68276 -18.71954 -16.87354 -16.06747 -15.79556 -15.59891 -15.21063 -15.10870 -14.54654 -14.37628 -14.17613 -13.76644 -13.44696 -13.17064 -12.70890 -12.62259 -12.29137 -12.22336 -11.83255 -11.76440 -11.37957 -11.28693 -11.11921 -10.80176 -10.73924 -10.56546 -10.49809 -10.49294 -9.64918 -9.64848 -9.37134 -9.23132 -8.97457 -8.95466 -8.30372 -5.95902 -3.97030 1.90769 2.98386 3.34743 3.34991 3.42238 3.48349 4.24429 4.34630 4.42640 4.51142 4.68494 4.77927 4.95636 5.02919 5.06349 5.18093 5.23929 5.34284 5.40210 5.46286 5.53067 5.57248 5.58703 5.71423 5.74440 5.75402 5.76413 5.81235 5.87059 6.05663 6.30001 6.30865 6.53170 6.54029 6.76371 6.96910 7.19639 7.65009 7.73990 7.86519 8.05250 8.49086 8.51680 9.10420 9.66854 11.15682 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.054896 B = 0.002563 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.930722 B =10921.908835 C =11244.561843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.113 4.113 5 C -0.099 4.099 6 C 0.123 3.877 7 N -0.740 5.740 8 C 0.511 3.489 9 O -0.539 6.539 10 C -0.139 4.139 11 C -0.095 4.095 12 C 0.020 3.980 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.109 4.109 22 C -0.086 4.086 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.836 -10.958 10.384 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.118 4.118 3 C -0.124 4.124 4 C -0.150 4.150 5 C -0.117 4.117 6 C -0.001 4.001 7 N -0.394 5.394 8 C 0.299 3.701 9 O -0.415 6.415 10 C -0.179 4.179 11 C -0.133 4.133 12 C -0.017 4.017 13 C -0.554 4.554 14 H 0.075 0.925 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.147 4.147 22 C -0.123 4.123 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.594 -11.367 9.738 27.102 hybrid contribution 0.579 0.415 -0.237 0.751 sum -22.015 -10.952 9.501 26.361 Atomic orbital electron populations 1.23630 0.95046 1.01771 1.03372 1.22002 0.95049 0.95942 0.98791 1.20829 0.97682 0.94716 0.99201 1.21629 0.97013 0.97567 0.98809 1.21385 0.95338 0.95697 0.99322 1.21322 0.90454 0.89833 0.98472 1.46156 1.29938 1.30941 1.32344 1.21257 0.80678 0.86824 0.81334 1.90673 1.72509 1.47565 1.30775 1.21841 0.97414 0.95544 1.03062 1.21440 0.94952 1.01056 0.95850 1.19141 0.93417 0.92106 0.97080 1.21318 1.10828 1.11213 1.12087 0.92525 1.25029 0.97984 0.95613 0.95994 1.69975 1.34920 1.14961 1.33930 0.86535 0.81666 0.77904 0.81921 1.19686 1.21053 1.21062 1.21510 0.96965 0.97270 0.98905 1.20805 0.97573 0.94754 0.99139 0.88587 0.88542 0.91235 0.90836 0.91314 0.91508 0.90389 0.91706 0.91731 0.76756 0.89437 0.89429 0.92734 0.92741 0.96613 0.96615 0.93151 0.91245 0.91431 0.90871 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 13.99 29.01 0.41 -0.95 16 2 C -0.12 -0.83 5.35 -100.51 -0.54 -1.37 16 3 C -0.09 -0.58 6.03 -27.49 -0.17 -0.75 16 4 C -0.11 -0.82 5.13 -26.63 -0.14 -0.96 16 5 C -0.10 -0.74 2.12 -90.66 -0.19 -0.93 16 6 C 0.12 1.28 5.06 -4.05 -0.02 1.26 16 7 N -0.74 -8.63 5.24 -60.30 -0.32 -8.94 16 8 C 0.51 8.32 7.83 -10.99 -0.09 8.23 16 9 O -0.54 -11.04 15.98 5.56 0.09 -10.95 16 10 C -0.14 -2.32 5.70 -27.89 -0.16 -2.48 16 11 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 12 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 17 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.11 -0.74 5.22 -26.63 -0.14 -0.88 16 22 C -0.09 -0.55 6.03 -27.48 -0.17 -0.71 16 23 H 0.10 0.57 7.92 -52.48 -0.42 0.16 16 24 H 0.10 0.59 7.92 -52.49 -0.42 0.18 16 25 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.49 7.07 -51.93 -0.37 0.12 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.40 3.54 7.63 -40.82 -0.31 3.23 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.05 1.25 8.10 -51.93 -0.42 0.82 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -33.31 348.07 -8.92 -42.23 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.78 Total: -2.93 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -1.87 Total: -15.27 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.42 Total: -35.51 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.31 -8.92 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830985602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.904 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds