Wall clock time and date at job start Mon Mar 30 2020 08:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53236 * 108.53353 * 231.61797 * 3 2 1 5 5 C 1.52954 * 109.40515 * 305.37271 * 4 3 2 6 6 C 1.52998 * 109.41554 * 183.70552 * 5 4 3 7 7 N 1.46495 * 109.47262 * 64.64504 * 6 5 4 8 8 C 1.34776 * 120.00353 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99928 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00510 * 180.02562 * 8 7 6 11 11 C 1.52995 * 109.47609 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47482 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47260 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00249 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99782 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00389 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47470 * 120.00083 * 17 15 13 20 20 H 1.48502 * 109.47344 * 239.99992 * 17 15 13 21 21 C 1.52962 * 109.81860 * 63.59882 * 5 4 3 22 22 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 23 23 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 24 24 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 25 25 H 1.08996 * 109.62853 * 351.32771 * 3 2 1 26 26 H 1.08994 * 109.62831 * 111.90784 * 3 2 1 27 27 H 1.09002 * 109.48366 * 185.39419 * 4 3 2 28 28 H 1.09001 * 109.48205 * 65.35438 * 4 3 2 29 29 H 1.09007 * 109.41410 * 303.49063 * 5 4 3 30 30 H 1.09004 * 109.47531 * 184.64460 * 6 5 4 31 31 H 1.09004 * 109.46854 * 304.64828 * 6 5 4 32 32 H 0.97005 * 120.00280 * 0.02562 * 7 6 5 33 33 H 1.09004 * 109.46585 * 299.99875 * 10 8 7 34 34 H 1.09001 * 109.47245 * 59.99286 * 10 8 7 35 35 H 1.09004 * 109.46846 * 300.00107 * 11 10 8 36 36 H 1.09001 * 109.47264 * 59.99464 * 11 10 8 37 37 H 1.08994 * 109.46982 * 300.00194 * 12 11 10 38 38 H 1.09004 * 109.46706 * 60.00166 * 12 11 10 39 39 H 0.96996 * 120.00061 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.48320 * 176.42559 * 21 5 4 41 41 H 1.08997 * 109.49150 * 56.38933 * 21 5 4 42 42 H 1.08997 * 109.62461 * 248.09547 * 22 2 1 43 43 H 1.08996 * 109.62473 * 8.47434 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1099 1.2542 -1.1389 5 6 3.9767 0.0023 -0.9943 6 6 5.0584 0.0048 -2.0764 7 7 5.9614 1.1381 -1.8615 8 6 6.9974 1.3426 -2.6991 9 8 7.1822 0.5880 -3.6304 10 6 7.9268 2.5080 -2.4777 11 6 9.0083 2.5107 -3.5598 12 6 9.9515 3.6943 -3.3355 13 6 11.0171 3.6965 -4.4010 14 1 11.0210 2.9306 -5.1623 15 6 11.9871 4.6763 -4.4039 16 7 11.9826 5.6088 -3.4765 17 14 13.3076 4.6795 -5.7251 18 1 13.0920 3.5324 -6.6432 19 1 13.2368 5.9487 -6.4928 20 1 14.6443 4.5596 -5.0893 21 6 3.1098 -1.2489 -1.1449 22 6 2.0857 -1.2987 -0.0062 23 1 -0.5400 -0.9354 -0.0046 24 1 -0.5399 0.9352 0.0045 25 1 1.4021 2.1334 -0.1548 26 1 2.6023 1.4165 0.9525 27 1 3.7420 2.1411 -1.0942 28 1 2.5886 1.2269 -2.0958 29 1 4.4488 -0.0001 -0.0117 30 1 5.6245 -0.9254 -2.0265 31 1 4.5909 0.0936 -3.0571 32 1 5.8139 1.7415 -1.1164 33 1 7.3608 3.4384 -2.5269 34 1 8.3945 2.4187 -1.4972 35 1 9.5741 1.5803 -3.5103 36 1 8.5409 2.5998 -4.5405 37 1 9.3854 4.6244 -3.3853 38 1 10.4190 3.6055 -2.3548 39 1 12.6648 6.2984 -3.4787 40 1 3.7418 -2.1361 -1.1044 41 1 2.5886 -1.2173 -2.1016 42 1 2.6023 -1.4212 0.9457 43 1 1.4017 -2.1330 -0.1615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830985602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:28 Heat of formation + Delta-G solvation = -86.672184 kcal Electronic energy + Delta-G solvation = -19361.510668 eV Core-core repulsion = 16404.193173 eV Total energy + Delta-G solvation = -2957.317495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89507 -39.58653 -36.35088 -35.94109 -34.05996 -33.42415 -31.95458 -30.09452 -28.47135 -25.92967 -24.44968 -23.92529 -22.20628 -21.58997 -21.03654 -19.27036 -18.60866 -17.75367 -16.91072 -16.82977 -16.47662 -15.85720 -15.71357 -15.49536 -14.94436 -14.77817 -14.58761 -14.26490 -14.10286 -13.73382 -13.58658 -13.19297 -13.09746 -12.90272 -12.61403 -12.51432 -12.39663 -12.36587 -11.90278 -11.78012 -11.54998 -11.46435 -11.34172 -11.24353 -11.04120 -10.72040 -10.54468 -10.05360 -9.87512 -8.20278 -6.30020 1.39404 1.39664 1.40038 1.53612 1.68536 2.25813 2.42491 3.12580 3.69161 3.73109 3.81120 3.94011 4.11996 4.20518 4.26927 4.28440 4.42120 4.44287 4.53931 4.62927 4.67478 4.77214 4.86834 4.92223 4.98719 5.04534 5.05538 5.07536 5.12358 5.19675 5.20771 5.24838 5.26939 5.41921 5.52595 5.56856 5.76294 5.80916 5.87571 6.02733 6.28090 6.59181 6.85648 7.30992 7.38644 8.91440 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.054896 B = 0.002563 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.930722 B =10921.908835 C =11244.561843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.085 4.085 4 C -0.111 4.111 5 C -0.087 4.087 6 C 0.123 3.877 7 N -0.717 5.717 8 C 0.514 3.486 9 O -0.588 6.588 10 C -0.131 4.131 11 C -0.083 4.083 12 C 0.025 3.975 13 C -0.546 4.546 14 H 0.050 0.950 15 C 0.002 3.998 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.108 4.108 22 C -0.083 4.083 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.415 0.585 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.001 0.999 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.444 -11.111 11.176 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.129 4.129 3 C -0.122 4.122 4 C -0.149 4.149 5 C -0.106 4.106 6 C 0.000 4.000 7 N -0.370 5.370 8 C 0.302 3.698 9 O -0.468 6.468 10 C -0.170 4.170 11 C -0.121 4.121 12 C -0.012 4.012 13 C -0.584 4.584 14 H 0.069 0.931 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.146 4.146 22 C -0.120 4.120 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.253 0.747 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.242 -11.510 10.576 28.009 hybrid contribution 0.714 0.467 -0.449 0.964 sum -22.528 -11.043 10.127 27.056 Atomic orbital electron populations 1.23773 0.95166 1.02285 1.03004 1.22144 0.95316 0.96323 0.99142 1.20822 0.97525 0.94727 0.99159 1.21611 0.97140 0.97457 0.98684 1.21311 0.94449 0.96263 0.98552 1.21412 0.90698 0.88786 0.99131 1.45934 1.28385 1.31162 1.31542 1.21071 0.81403 0.86109 0.81257 1.90662 1.73966 1.49155 1.33009 1.21679 0.96438 0.96971 1.01944 1.21161 0.95504 0.98326 0.97122 1.19028 0.93454 0.93122 0.95565 1.21721 1.12274 1.11505 1.12943 0.93147 1.25915 1.00290 0.95059 0.98337 1.70072 1.35904 1.15495 1.35468 0.85440 0.78663 0.78219 0.78984 1.19286 1.20035 1.20039 1.21497 0.97042 0.97062 0.98951 1.20801 0.97437 0.94724 0.99062 0.88022 0.88232 0.91018 0.90065 0.90970 0.92530 0.89197 0.92466 0.92962 0.74720 0.87368 0.87330 0.94192 0.94236 0.98017 0.98005 0.92658 0.90811 0.92087 0.90219 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.44 13.99 67.78 0.95 -1.49 16 2 C -0.13 -1.58 5.35 -16.13 -0.09 -1.67 16 3 C -0.09 -0.97 6.03 30.11 0.18 -0.79 16 4 C -0.11 -1.42 5.13 30.66 0.16 -1.26 16 5 C -0.09 -1.14 2.12 -10.82 -0.02 -1.16 16 6 C 0.12 2.44 5.06 86.38 0.44 2.87 16 7 N -0.72 -15.51 5.24 -463.07 -2.43 -17.93 16 8 C 0.51 16.29 7.83 87.66 0.69 16.97 16 9 O -0.59 -24.26 15.98 -3.03 -0.05 -24.31 16 10 C -0.13 -4.23 5.70 29.85 0.17 -4.06 16 11 C -0.08 -3.70 4.44 30.59 0.14 -3.56 16 12 C 0.03 1.36 4.97 29.85 0.15 1.51 16 13 C -0.55 -32.46 9.11 25.60 0.23 -32.23 16 14 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 17 Si 0.96 45.53 29.54 68.60 2.03 47.55 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 C -0.11 -1.31 5.22 30.66 0.16 -1.15 16 22 C -0.08 -0.90 6.03 30.11 0.18 -0.72 16 23 H 0.10 1.06 7.92 -2.91 -0.02 1.03 16 24 H 0.10 1.09 7.92 -2.91 -0.02 1.06 16 25 H 0.07 0.79 7.89 -2.39 -0.02 0.77 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.86 7.07 -2.39 -0.02 0.85 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.42 6.25 7.63 -92.70 -0.71 5.55 16 33 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 34 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 36 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 39 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.73 7.89 -2.39 -0.02 0.72 16 Total: -1.00 -71.92 348.07 3.88 -68.04 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.25 Total: 9.15 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 3.79 Total: -26.17 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -2.14 Total: -74.27 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.31 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.92 3.88 -68.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830985602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.628 kcal (2) G-P(sol) polarization free energy of solvation -71.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds