Wall clock time and date at job start Mon Mar 30 2020 07:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00164 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99840 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99468 * 3 2 1 7 7 C 1.37871 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00409 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47535 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00065 * 180.02562 * 11 10 9 13 13 O 1.21613 * 119.99910 * 359.97438 * 12 11 10 14 14 C 1.47104 * 120.00058 * 180.02562 * 12 11 10 15 15 C 1.32991 * 119.99556 * 180.27387 * 14 12 11 16 16 C 1.50707 * 119.99627 * 179.71911 * 15 14 12 17 17 C 1.54244 * 108.89822 * 242.88231 * 16 15 14 18 18 C 1.50471 * 108.52435 * 159.26355 * 17 16 15 19 19 C 1.54073 * 112.49684 * 94.15164 * 18 17 16 20 20 C 1.54064 * 112.81409 * 318.28149 * 19 18 17 21 21 C 1.50468 * 112.49945 * 318.28306 * 20 19 18 22 22 C 1.45544 * 108.89483 * 119.99750 * 16 15 14 23 23 H 0.96999 * 119.99804 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47335 * 59.99852 * 9 7 2 25 25 H 1.08998 * 109.47423 * 300.00047 * 9 7 2 26 26 H 1.09002 * 109.46916 * 60.00589 * 10 9 7 27 27 H 1.08998 * 109.47285 * 300.00147 * 10 9 7 28 28 H 0.97000 * 120.00380 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.99781 * 359.97438 * 14 12 11 30 30 H 1.07992 * 120.00607 * 359.72198 * 15 14 12 31 31 H 1.08999 * 108.87327 * 1.39797 * 16 15 14 32 32 H 1.08997 * 109.62607 * 278.97701 * 17 16 15 33 33 H 1.08994 * 109.62444 * 39.55351 * 17 16 15 34 34 H 1.08995 * 108.87670 * 333.37686 * 18 17 16 35 35 H 1.08991 * 108.87388 * 214.92803 * 18 17 16 36 36 H 1.08999 * 108.81226 * 197.41834 * 19 18 17 37 37 H 1.08999 * 108.81144 * 79.14408 * 19 18 17 38 38 H 1.09002 * 108.87683 * 197.50540 * 20 19 18 39 39 H 1.08998 * 108.79671 * 79.01452 * 20 19 18 40 40 H 1.08999 * 109.63091 * 334.44762 * 21 20 19 41 41 H 1.09002 * 109.62981 * 213.86652 * 21 20 19 42 42 H 1.09007 * 108.89563 * 303.44884 * 22 16 15 43 43 H 1.09000 * 108.89228 * 61.93206 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1865 -6.0980 0.0003 13 8 3.4026 -6.0981 0.0007 14 6 1.4509 -7.3720 -0.0009 15 6 2.1159 -8.5237 0.0051 16 6 1.3623 -9.8288 0.0102 17 6 1.6872 -10.5881 1.3129 18 6 0.5969 -11.5941 1.5646 19 6 0.9397 -12.9877 1.0042 20 6 1.5983 -12.9266 -0.3873 21 6 0.9461 -11.9139 -1.2890 22 6 1.7240 -10.5866 -1.1785 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.5427 -4.9308 0.0000 29 1 0.3709 -7.3719 -0.0016 30 1 3.1958 -8.5238 0.0062 31 1 0.2931 -9.6187 -0.0170 32 1 2.6427 -11.1021 1.2084 33 1 1.7356 -9.8849 2.1442 34 1 -0.3224 -11.2422 1.0965 35 1 0.4342 -11.6763 2.6391 36 1 0.0232 -13.5735 0.9340 37 1 1.6209 -13.4861 1.6939 38 1 1.5298 -13.9096 -0.8533 39 1 2.6499 -12.6664 -0.2670 40 1 -0.0874 -11.7593 -0.9790 41 1 0.9731 -12.2695 -2.3190 42 1 1.5156 -9.9807 -2.0604 43 1 2.7915 -10.8047 -1.1468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844474568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:22 Heat of formation + Delta-G solvation = -82.022850 kcal Electronic energy + Delta-G solvation = -19303.302854 eV Core-core repulsion = 16346.186970 eV Total energy + Delta-G solvation = -2957.115884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78682 -39.97349 -36.67436 -35.39189 -34.82194 -32.99450 -32.17215 -31.11444 -27.18308 -25.83251 -25.50051 -23.46995 -22.49908 -21.27107 -20.51648 -20.07179 -18.65947 -18.14129 -16.83654 -16.65056 -16.43268 -16.42380 -15.54477 -15.45093 -14.98210 -14.89092 -14.74656 -14.31205 -13.86538 -13.81368 -13.42970 -13.24361 -12.99542 -12.94450 -12.68440 -12.55017 -12.26194 -11.85056 -11.71731 -11.68087 -11.54044 -11.47392 -11.30318 -11.16236 -11.07153 -10.80161 -10.61518 -10.41004 -9.95497 -8.25252 -6.36139 0.41818 1.40956 1.43525 1.51558 2.29117 2.33462 2.47250 3.09197 3.55525 3.70598 3.95605 4.07034 4.13300 4.28460 4.31444 4.37241 4.43766 4.46253 4.49591 4.51701 4.58297 4.76554 4.82562 4.96533 5.00943 5.11575 5.14166 5.23885 5.27719 5.36248 5.38507 5.39865 5.40871 5.44215 5.49038 5.53868 5.55846 5.62511 5.64235 5.77422 6.14640 6.65530 6.76722 7.27909 7.33140 8.86485 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.054886 B = 0.002518 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.025860 B =11119.036086 C =11203.764056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.139 3.861 11 N -0.713 5.713 12 C 0.531 3.469 13 O -0.602 6.602 14 C -0.219 4.219 15 C -0.050 4.050 16 C -0.052 4.052 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.114 4.114 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.412 0.588 29 H 0.155 0.845 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 -27.055 0.276 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.016 3.984 11 N -0.363 5.363 12 C 0.322 3.678 13 O -0.486 6.486 14 C -0.240 4.240 15 C -0.070 4.070 16 C -0.071 4.071 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.152 4.152 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.248 0.752 29 H 0.172 0.828 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.087 -26.904 0.278 26.927 hybrid contribution 0.029 1.320 0.009 1.320 sum -1.057 -25.584 0.286 25.607 Atomic orbital electron populations 1.70051 1.07541 1.28129 1.50839 1.25889 0.95839 1.03149 0.94334 0.85481 0.78303 0.78022 0.79140 1.19335 1.20452 1.19324 1.21442 0.93579 0.91980 1.51808 0.92362 1.19126 0.94180 0.91708 0.96378 1.21226 0.95114 0.82432 0.99667 1.46077 1.11116 1.05608 1.73487 1.19374 0.87242 0.85716 0.75489 1.90719 1.15897 1.88681 1.53292 1.22658 1.01376 0.90399 1.09528 1.23955 1.00329 0.94241 0.88514 1.19445 1.00019 0.91027 0.96564 1.21340 0.99973 0.97516 0.95679 1.21309 0.98443 0.94740 1.00990 1.21914 1.00796 0.96519 0.96147 1.21364 0.99927 0.99326 0.95215 1.21284 0.99793 0.93955 0.99837 1.20502 1.00842 0.96900 0.96940 0.92471 0.97275 0.97262 0.93686 0.93694 0.75219 0.82755 0.87435 0.89365 0.91276 0.92186 0.91572 0.91861 0.91763 0.92278 0.91786 0.92475 0.91104 0.91308 0.92324 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 2 C 0.01 0.38 5.46 84.65 0.46 0.85 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -31.29 9.11 25.60 0.23 -31.06 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.21 5.09 29.85 0.15 1.37 16 10 C 0.14 6.26 5.61 86.38 0.48 6.75 16 11 N -0.71 -26.11 5.55 -466.70 -2.59 -28.70 16 12 C 0.53 19.00 7.76 86.57 0.67 19.67 16 13 O -0.60 -26.49 16.22 -4.07 -0.07 -26.56 16 14 C -0.22 -5.47 9.63 23.43 0.23 -5.24 16 15 C -0.05 -1.11 8.10 24.52 0.20 -0.91 16 16 C -0.05 -0.80 2.00 -13.39 -0.03 -0.83 16 17 C -0.11 -1.53 4.97 30.20 0.15 -1.38 16 18 C -0.12 -1.35 5.31 30.14 0.16 -1.19 16 19 C -0.12 -1.19 5.85 31.32 0.18 -1.01 16 20 C -0.12 -1.28 5.32 30.13 0.16 -1.12 16 21 C -0.11 -1.24 5.61 30.19 0.17 -1.07 16 22 C -0.11 -1.62 4.43 28.74 0.13 -1.49 16 23 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.41 12.75 8.46 -92.71 -0.78 11.97 16 29 H 0.15 2.85 7.85 -2.91 -0.02 2.83 16 30 H 0.11 2.79 7.49 -2.91 -0.02 2.76 16 31 H 0.09 1.20 7.10 -2.39 -0.02 1.18 16 32 H 0.07 0.99 6.97 -2.39 -0.02 0.97 16 33 H 0.06 0.95 7.97 -2.39 -0.02 0.93 16 34 H 0.07 0.72 6.63 -2.39 -0.02 0.71 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 0.67 6.63 -2.39 -0.02 0.65 16 40 H 0.07 0.75 6.98 -2.39 -0.02 0.73 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.90 8.10 -2.38 -0.02 0.88 16 43 H 0.06 0.91 7.47 -2.39 -0.02 0.90 16 Total: -1.00 -67.50 341.14 3.19 -64.31 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.19 Total: 16.08 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 3.35 Total: -16.67 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.31 Total: -83.22 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.07 Total: -26.56 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.50 3.19 -64.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844474568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.711 kcal (2) G-P(sol) polarization free energy of solvation -67.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds