Wall clock time and date at job start Mon Mar 30 2020 06:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86796 * 120.00288 * 2 1 4 4 H 1.48493 * 109.47211 * 270.00041 * 3 2 1 5 5 H 1.48497 * 109.46904 * 30.00102 * 3 2 1 6 6 H 1.48504 * 109.47000 * 150.00061 * 3 2 1 7 7 C 1.37882 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47195 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46938 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00216 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99805 * 180.02562 * 12 11 10 15 15 C 1.48216 * 127.77354 * 359.97438 * 14 12 11 16 16 C 1.54598 * 104.65032 * 140.95210 * 15 14 12 17 17 C 1.53461 * 104.65367 * 23.72639 * 16 15 14 18 18 C 1.53445 * 110.83352 * 119.90864 * 17 16 15 19 19 C 1.55085 * 103.98518 * 98.47021 * 18 17 16 20 20 C 1.54961 * 102.86193 * 37.20772 * 19 18 17 21 21 C 1.53059 * 111.03686 * 239.28904 * 17 16 15 22 22 C 1.48339 * 127.77008 * 180.02562 * 14 12 11 23 23 H 0.97001 * 120.00333 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47142 * 60.00506 * 9 7 2 25 25 H 1.08992 * 109.47490 * 299.99959 * 9 7 2 26 26 H 1.09003 * 109.47134 * 59.99817 * 10 9 7 27 27 H 1.09002 * 109.46916 * 300.00483 * 10 9 7 28 28 H 1.09001 * 109.47092 * 60.00651 * 11 10 9 29 29 H 1.08992 * 109.47460 * 300.00153 * 11 10 9 30 30 H 1.08995 * 110.40240 * 22.15772 * 15 14 12 31 31 H 1.09001 * 110.50314 * 259.79198 * 15 14 12 32 32 H 1.09008 * 110.39889 * 264.93902 * 16 15 14 33 33 H 1.08995 * 110.40727 * 142.52340 * 16 15 14 34 34 H 1.08994 * 110.52632 * 217.09685 * 18 17 16 35 35 H 1.08997 * 110.51859 * 339.84589 * 18 17 16 36 36 H 1.08996 * 110.73629 * 278.85786 * 19 18 17 37 37 H 1.08999 * 110.88224 * 155.62450 * 19 18 17 38 38 H 1.09002 * 110.48252 * 203.81917 * 20 19 18 39 39 H 1.09002 * 110.59607 * 81.24607 * 20 19 18 40 40 H 1.09002 * 110.09614 * 357.54075 * 21 17 16 41 41 H 1.08995 * 110.09770 * 119.14815 * 21 17 16 42 42 H 1.09000 * 110.44392 * 100.06510 * 22 14 12 43 43 H 1.08993 * 110.44653 * 337.53070 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0005 13 8 3.6517 -5.9111 0.0001 14 7 2.0100 -7.4033 0.0004 15 6 0.6027 -7.8686 0.0014 16 6 0.5955 -9.0939 -0.9413 17 6 2.0443 -9.5996 -0.9319 18 6 2.1151 -11.0433 -0.4169 19 6 2.1855 -11.8989 -1.7085 20 6 3.0696 -11.0374 -2.6452 21 6 2.6407 -9.5846 -2.3415 22 6 2.8125 -8.6508 0.0004 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 2.8717 -3.6045 0.8905 27 1 2.8717 -3.6044 -0.8894 28 1 0.8531 -5.0451 -0.8886 29 1 0.8536 -5.0446 0.8913 30 1 -0.0554 -7.0895 -0.3831 31 1 0.2979 -8.1607 1.0063 32 1 0.3034 -8.7966 -1.9486 33 1 -0.0776 -9.8622 -0.5608 34 1 3.0100 -11.1899 0.1878 35 1 1.2210 -11.2889 0.1560 36 1 1.1918 -12.0369 -2.1346 37 1 2.6564 -12.8620 -1.5114 38 1 2.8720 -11.2831 -3.6887 39 1 4.1253 -11.1797 -2.4141 40 1 1.8910 -9.2571 -3.0618 41 1 3.5068 -8.9238 -2.3747 42 1 2.8684 -9.0676 1.0060 43 1 3.8122 -8.4603 -0.3899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846898327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:37 Heat of formation + Delta-G solvation = -65.763988 kcal Electronic energy + Delta-G solvation = -20128.943871 eV Core-core repulsion = 17172.533024 eV Total energy + Delta-G solvation = -2956.410847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52431 -38.60847 -35.73694 -34.15956 -32.04809 -30.96336 -29.37911 -29.04176 -27.81115 -25.12718 -23.23798 -22.91563 -21.01401 -20.22451 -19.28174 -18.74541 -16.79627 -16.37398 -16.15127 -15.34965 -15.23285 -14.95661 -14.50823 -14.35836 -13.97858 -13.30876 -13.15012 -12.83690 -12.62953 -12.28605 -12.04483 -11.83889 -11.78830 -11.38764 -11.34842 -11.31194 -10.99951 -10.81729 -10.78468 -10.73491 -10.64942 -10.52664 -10.50725 -9.64155 -9.63232 -9.23529 -8.98844 -8.63137 -8.29881 -5.95602 -3.96805 2.95213 3.07741 3.36397 3.41999 3.47166 4.14863 4.20462 4.24214 4.51189 4.73952 4.80703 4.90865 5.06295 5.10569 5.14130 5.19744 5.36755 5.40470 5.45368 5.50641 5.52689 5.60762 5.64302 5.66751 5.73325 5.74949 5.77917 5.83236 5.89625 5.97744 6.05563 6.09346 6.24436 6.38333 6.76190 6.96919 7.19000 7.68170 7.74408 7.86565 8.05400 8.46300 8.49713 9.10305 9.66985 11.15990 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046931 B = 0.003124 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.483283 B = 8961.345470 C = 9134.871524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.133 4.133 12 C 0.534 3.466 13 O -0.539 6.539 14 N -0.631 5.631 15 C 0.099 3.901 16 C -0.123 4.123 17 C -0.078 4.078 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.112 4.112 22 C 0.115 3.885 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 -25.662 -2.444 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.172 4.172 12 C 0.325 3.675 13 O -0.415 6.415 14 N -0.367 5.367 15 C -0.024 4.024 16 C -0.161 4.161 17 C -0.079 4.079 18 C -0.148 4.148 19 C -0.161 4.161 20 C -0.163 4.163 21 C -0.150 4.150 22 C -0.008 4.008 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.416 -25.267 -2.434 25.387 hybrid contribution 0.284 0.890 0.008 0.934 sum 0.701 -24.377 -2.426 24.507 Atomic orbital electron populations 1.69960 1.06040 1.26519 1.51275 1.25019 0.94856 0.99242 0.95409 0.86589 0.79910 0.83415 0.78096 1.20681 1.21263 1.19831 1.21281 0.93205 0.91019 1.50062 0.92573 1.19125 0.93950 0.91437 0.97089 1.21460 0.98656 0.91526 1.01680 1.21817 0.98076 0.93793 1.03544 1.20960 0.90069 0.82027 0.74480 1.90677 1.17380 1.83763 1.49654 1.49209 1.07751 1.04983 1.74802 1.22430 0.83649 0.96682 0.99663 1.22713 0.95593 0.97276 1.00545 1.21566 0.95443 0.95057 0.95788 1.22404 1.02110 0.92898 0.97379 1.22522 0.99973 0.98026 0.95614 1.22427 0.99650 0.94869 0.99364 1.22265 1.00840 0.96896 0.94948 1.22377 0.96061 0.83656 0.98729 0.93083 0.96642 0.96610 0.92714 0.92719 0.89520 0.89496 0.89842 0.91192 0.90670 0.90262 0.91270 0.91204 0.91517 0.91704 0.91802 0.91682 0.91456 0.91431 0.91560 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.28 55.43 0.74 -26.66 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.13 4.44 -26.73 -0.12 -2.25 16 11 C -0.13 -2.33 4.68 -27.88 -0.13 -2.46 16 12 C 0.53 9.35 7.91 -10.98 -0.09 9.26 16 13 O -0.54 -11.52 16.26 5.56 0.09 -11.43 16 14 N -0.63 -8.47 3.32 -169.44 -0.56 -9.04 16 15 C 0.10 0.97 6.93 -2.26 -0.02 0.95 16 16 C -0.12 -0.98 6.31 -25.65 -0.16 -1.14 16 17 C -0.08 -0.67 0.88 -153.69 -0.14 -0.80 16 18 C -0.11 -0.75 5.80 -25.40 -0.15 -0.90 16 19 C -0.12 -0.78 6.92 -24.59 -0.17 -0.95 16 20 C -0.13 -0.91 6.85 -24.91 -0.17 -1.08 16 21 C -0.11 -1.00 6.15 -25.92 -0.16 -1.16 16 22 C 0.11 1.30 6.01 -2.71 -0.02 1.28 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 27 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 28 H 0.09 1.40 7.95 -51.93 -0.41 0.99 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.08 0.80 7.31 -51.93 -0.38 0.42 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.61 7.16 -51.92 -0.37 0.23 16 33 H 0.08 0.49 7.29 -51.93 -0.38 0.11 16 34 H 0.07 0.47 7.82 -51.93 -0.41 0.07 16 35 H 0.07 0.42 7.37 -51.93 -0.38 0.04 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.60 7.14 -51.93 -0.37 0.23 16 41 H 0.07 0.72 7.28 -51.93 -0.38 0.34 16 42 H 0.07 0.69 7.81 -51.93 -0.41 0.28 16 43 H 0.08 1.05 7.14 -51.93 -0.37 0.68 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -33.37 337.79 -9.15 -42.52 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -7.62 Total: -4.89 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.86 Total: -12.85 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.17 Total: -35.69 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.37 -9.15 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846898327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.244 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds