Wall clock time and date at job start Mon Mar 30 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86796 * 120.00288 * 2 1 4 4 H 1.48493 * 109.47211 * 270.00041 * 3 2 1 5 5 H 1.48497 * 109.46904 * 30.00102 * 3 2 1 6 6 H 1.48504 * 109.47000 * 150.00061 * 3 2 1 7 7 C 1.37882 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47195 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46938 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00216 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99805 * 180.02562 * 12 11 10 15 15 C 1.48216 * 127.77354 * 359.97438 * 14 12 11 16 16 C 1.54598 * 104.65032 * 140.95210 * 15 14 12 17 17 C 1.53461 * 104.65367 * 23.72639 * 16 15 14 18 18 C 1.53445 * 110.83352 * 119.90864 * 17 16 15 19 19 C 1.55085 * 103.98518 * 98.47021 * 18 17 16 20 20 C 1.54961 * 102.86193 * 37.20772 * 19 18 17 21 21 C 1.53059 * 111.03686 * 239.28904 * 17 16 15 22 22 C 1.48339 * 127.77008 * 180.02562 * 14 12 11 23 23 H 0.97001 * 120.00333 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47142 * 60.00506 * 9 7 2 25 25 H 1.08992 * 109.47490 * 299.99959 * 9 7 2 26 26 H 1.09003 * 109.47134 * 59.99817 * 10 9 7 27 27 H 1.09002 * 109.46916 * 300.00483 * 10 9 7 28 28 H 1.09001 * 109.47092 * 60.00651 * 11 10 9 29 29 H 1.08992 * 109.47460 * 300.00153 * 11 10 9 30 30 H 1.08995 * 110.40240 * 22.15772 * 15 14 12 31 31 H 1.09001 * 110.50314 * 259.79198 * 15 14 12 32 32 H 1.09008 * 110.39889 * 264.93902 * 16 15 14 33 33 H 1.08995 * 110.40727 * 142.52340 * 16 15 14 34 34 H 1.08994 * 110.52632 * 217.09685 * 18 17 16 35 35 H 1.08997 * 110.51859 * 339.84589 * 18 17 16 36 36 H 1.08996 * 110.73629 * 278.85786 * 19 18 17 37 37 H 1.08999 * 110.88224 * 155.62450 * 19 18 17 38 38 H 1.09002 * 110.48252 * 203.81917 * 20 19 18 39 39 H 1.09002 * 110.59607 * 81.24607 * 20 19 18 40 40 H 1.09002 * 110.09614 * 357.54075 * 21 17 16 41 41 H 1.08995 * 110.09770 * 119.14815 * 21 17 16 42 42 H 1.09000 * 110.44392 * 100.06510 * 22 14 12 43 43 H 1.08993 * 110.44653 * 337.53070 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0005 13 8 3.6517 -5.9111 0.0001 14 7 2.0100 -7.4033 0.0004 15 6 0.6027 -7.8686 0.0014 16 6 0.5955 -9.0939 -0.9413 17 6 2.0443 -9.5996 -0.9319 18 6 2.1151 -11.0433 -0.4169 19 6 2.1855 -11.8989 -1.7085 20 6 3.0696 -11.0374 -2.6452 21 6 2.6407 -9.5846 -2.3415 22 6 2.8125 -8.6508 0.0004 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 2.8717 -3.6045 0.8905 27 1 2.8717 -3.6044 -0.8894 28 1 0.8531 -5.0451 -0.8886 29 1 0.8536 -5.0446 0.8913 30 1 -0.0554 -7.0895 -0.3831 31 1 0.2979 -8.1607 1.0063 32 1 0.3034 -8.7966 -1.9486 33 1 -0.0776 -9.8622 -0.5608 34 1 3.0100 -11.1899 0.1878 35 1 1.2210 -11.2889 0.1560 36 1 1.1918 -12.0369 -2.1346 37 1 2.6564 -12.8620 -1.5114 38 1 2.8720 -11.2831 -3.6887 39 1 4.1253 -11.1797 -2.4141 40 1 1.8910 -9.2571 -3.0618 41 1 3.5068 -8.9238 -2.3747 42 1 2.8684 -9.0676 1.0060 43 1 3.8122 -8.4603 -0.3899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846898327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:36 Heat of formation + Delta-G solvation = -84.854100 kcal Electronic energy + Delta-G solvation = -20129.771680 eV Core-core repulsion = 17172.533024 eV Total energy + Delta-G solvation = -2957.238656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45957 -39.77985 -36.65848 -36.14048 -34.05498 -31.95505 -30.34004 -29.65500 -29.43680 -26.54547 -24.88163 -23.64327 -22.14229 -21.55108 -20.28428 -19.74146 -18.48609 -17.91127 -17.27764 -16.58039 -16.40828 -16.32501 -15.74055 -15.47125 -15.02260 -14.47317 -14.35341 -14.02967 -13.86663 -13.78842 -13.29379 -13.15133 -13.01213 -12.64531 -12.53248 -12.50850 -12.42136 -11.97220 -11.90728 -11.72709 -11.59753 -11.49593 -11.42433 -11.40179 -11.29182 -11.20880 -10.77643 -10.55714 -9.73284 -8.21490 -6.31634 1.38664 1.39993 1.51623 1.59588 1.95780 2.40891 3.11321 3.36820 3.54823 3.57744 3.81158 4.06749 4.15184 4.18960 4.27807 4.30485 4.38052 4.41426 4.56313 4.63062 4.73161 4.79011 4.82383 4.86691 4.90723 4.93109 5.00600 5.05879 5.07990 5.11185 5.16173 5.18729 5.27252 5.29688 5.42004 5.50486 5.51768 5.52613 5.72530 5.84276 6.25767 6.51795 6.83212 7.13978 7.36959 8.90190 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046931 B = 0.003124 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.483283 B = 8961.345470 C = 9134.871524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.122 4.122 12 C 0.531 3.469 13 O -0.590 6.590 14 N -0.628 5.628 15 C 0.090 3.910 16 C -0.116 4.116 17 C -0.072 4.072 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.115 4.115 22 C 0.110 3.890 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 -27.203 -2.306 27.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.162 4.162 12 C 0.322 3.678 13 O -0.471 6.471 14 N -0.361 5.361 15 C -0.032 4.032 16 C -0.154 4.154 17 C -0.073 4.073 18 C -0.144 4.144 19 C -0.156 4.156 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.013 4.013 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.692 -26.862 -2.299 26.969 hybrid contribution 0.592 1.320 -0.042 1.447 sum -0.100 -25.542 -2.342 25.650 Atomic orbital electron populations 1.70060 1.07487 1.27853 1.51482 1.25908 0.95851 1.03068 0.94603 0.85487 0.78611 0.78628 0.78584 1.19660 1.20133 1.19345 1.21683 0.93318 0.92822 1.50906 0.93153 1.18996 0.94097 0.92237 0.95546 1.21170 0.97678 0.92973 1.00177 1.21622 0.97761 0.91484 1.05298 1.20771 0.89107 0.83381 0.74557 1.90652 1.19165 1.84784 1.52506 1.49198 1.10123 1.04285 1.72519 1.22786 0.81249 0.97599 1.01535 1.22731 0.95380 0.97023 1.00260 1.21552 0.95400 0.95644 0.94697 1.22407 1.02976 0.91238 0.97772 1.22513 1.00214 0.98042 0.94820 1.22424 0.99765 0.93869 1.00172 1.22275 0.99865 0.97655 0.95511 1.22582 0.95200 0.83290 1.00191 0.92586 0.98055 0.97982 0.94186 0.94258 0.87779 0.87634 0.89442 0.89084 0.90679 0.87369 0.91378 0.89413 0.90598 0.90653 0.91214 0.92092 0.91461 0.94072 0.90140 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.28 21.45 0.28 -56.64 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.55 -33.01 9.11 25.60 0.23 -32.78 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.08 -3.78 4.44 30.59 0.14 -3.65 16 11 C -0.12 -4.29 4.68 29.85 0.14 -4.15 16 12 C 0.53 18.83 7.91 87.66 0.69 19.52 16 13 O -0.59 -26.30 16.26 -3.04 -0.05 -26.35 16 14 N -0.63 -16.35 3.32 -808.38 -2.69 -19.04 16 15 C 0.09 1.53 6.93 86.59 0.60 2.13 16 16 C -0.12 -1.49 6.31 31.29 0.20 -1.29 16 17 C -0.07 -1.10 0.88 -51.65 -0.05 -1.15 16 18 C -0.11 -1.13 5.80 31.46 0.18 -0.95 16 19 C -0.12 -1.15 6.92 31.98 0.22 -0.93 16 20 C -0.12 -1.64 6.85 31.77 0.22 -1.43 16 21 C -0.12 -2.00 6.15 31.12 0.19 -1.81 16 22 C 0.11 2.41 6.01 86.23 0.52 2.93 16 23 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 27 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 28 H 0.10 3.28 7.95 -2.39 -0.02 3.26 16 29 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.09 1.44 7.31 -2.39 -0.02 1.43 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.00 7.16 -2.38 -0.02 0.99 16 33 H 0.11 0.83 7.29 -2.39 -0.02 0.81 16 34 H 0.07 0.76 7.82 -2.39 -0.02 0.74 16 35 H 0.09 0.67 7.37 -2.39 -0.02 0.65 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.15 7.14 -2.39 -0.02 1.13 16 41 H 0.04 0.92 7.28 -2.39 -0.02 0.90 16 42 H 0.08 1.55 7.81 -2.39 -0.02 1.54 16 43 H 0.06 1.53 7.14 -2.39 -0.02 1.51 16 Total: -1.00 -73.63 337.79 4.43 -69.20 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.96 Total: 6.19 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 3.90 Total: -21.17 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -2.40 Total: -75.68 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.63 4.43 -69.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846898327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.652 kcal (2) G-P(sol) polarization free energy of solvation -73.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds