Wall clock time and date at job start Mon Mar 30 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 115.55489 * 2 1 4 4 C 1.53079 * 117.51003 * 214.27778 * 2 1 3 5 5 C 1.53002 * 59.98602 * 252.52571 * 4 2 1 6 6 H 1.08995 * 117.49731 * 107.49665 * 5 4 2 7 7 C 1.50697 * 117.50200 * 252.50073 * 5 4 2 8 8 N 1.29954 * 126.28834 * 8.76893 * 7 5 4 9 9 O 1.21296 * 110.24970 * 179.68035 * 8 7 5 10 10 C 1.33638 * 109.81265 * 0.47626 * 9 8 7 11 11 C 1.50700 * 126.54840 * 179.80121 * 10 9 8 12 12 H 1.09005 * 109.46978 * 194.68127 * 11 10 9 13 13 N 1.46901 * 109.47070 * 314.67873 * 11 10 9 14 14 C 1.52993 * 109.47590 * 74.68359 * 11 10 9 15 15 C 1.52996 * 109.47473 * 174.99796 * 14 11 10 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 14 11 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 N 1.31130 * 106.89820 * 359.52872 * 10 9 8 26 26 H 1.08992 * 109.47183 * 274.33307 * 1 2 3 27 27 H 1.09002 * 109.46466 * 34.32833 * 1 2 3 28 28 H 1.08994 * 109.47188 * 154.32191 * 1 2 3 29 29 H 1.09003 * 117.51352 * 145.05044 * 4 2 1 30 30 H 1.08993 * 117.49813 * 0.02562 * 4 2 1 31 31 H 1.00896 * 110.99542 * 60.00609 * 13 11 10 32 32 H 1.00902 * 110.99903 * 183.95968 * 13 11 10 33 33 H 1.09000 * 109.47250 * 54.99811 * 14 11 10 34 34 H 1.09004 * 109.46862 * 294.99834 * 14 11 10 35 35 H 1.09004 * 109.47368 * 59.99787 * 15 14 11 36 36 H 1.08996 * 109.47261 * 300.00171 * 15 14 11 37 37 H 1.09000 * 109.46986 * 60.00254 * 16 15 14 38 38 H 1.08993 * 109.47662 * 300.00031 * 16 15 14 39 39 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2371 -1.1219 -0.7647 5 6 2.2364 -1.1209 0.7654 6 1 1.6111 -1.8581 1.2688 7 6 3.5289 -0.7807 1.4616 8 7 4.6107 -0.3318 0.8987 9 8 5.4735 -0.1508 1.7319 10 6 5.0133 -0.4868 2.9407 11 6 5.7711 -0.4146 4.2413 12 1 5.2415 -0.9874 5.0027 13 7 7.1168 -0.9738 4.0556 14 6 5.8823 1.0448 4.6866 15 6 6.5409 1.1085 6.0661 16 6 6.6526 2.5681 6.5112 17 6 7.3008 2.6306 7.8703 18 1 7.6032 1.7204 8.3667 19 6 7.5077 3.8499 8.4798 20 7 8.0738 3.9045 9.6656 21 14 6.9841 5.4242 7.6215 22 1 8.1045 5.9302 6.7887 23 1 5.8092 5.1487 6.7560 24 1 6.6220 6.4450 8.6374 25 7 3.7745 -0.8855 2.7797 26 1 -0.3633 0.0776 1.0246 27 1 -0.3632 0.8487 -0.5796 28 1 -0.3633 -0.9261 -0.4453 29 1 3.1725 -0.8766 -1.2677 30 1 1.6120 -1.8595 -1.2679 31 1 7.6283 -0.4596 3.3543 32 1 7.6226 -0.9962 4.9284 33 1 4.8868 1.4857 4.7387 34 1 6.4878 1.5985 3.9690 35 1 7.5364 0.6676 6.0142 36 1 5.9354 0.5548 6.7837 37 1 5.6573 3.0093 6.5631 38 1 7.2583 3.1214 5.7936 39 1 8.2197 4.7623 10.0943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848624250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:35 Heat of formation + Delta-G solvation = 70.556489 kcal Electronic energy + Delta-G solvation = -19321.189677 eV Core-core repulsion = 16267.149786 eV Total energy + Delta-G solvation = -3054.039891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.62485 -38.46920 -37.37801 -35.45816 -33.72743 -32.06413 -31.41991 -28.98815 -28.34975 -25.81264 -25.01878 -23.46367 -22.14037 -21.22536 -20.29089 -19.97730 -18.06796 -17.71544 -16.79263 -16.44771 -15.83989 -15.06948 -14.67669 -14.49219 -14.09838 -13.74935 -13.59975 -13.19031 -13.01781 -12.68917 -12.49761 -12.26584 -12.09896 -11.96512 -11.77096 -11.51889 -11.15514 -11.03542 -10.85244 -10.74087 -10.54754 -10.07384 -9.89336 -9.79525 -9.68776 -9.27714 -8.87642 -8.59108 -6.09600 -4.08306 1.08023 2.05511 2.75267 3.26363 3.26650 3.34769 3.37679 3.42681 3.89688 4.32124 4.40394 4.42913 4.45714 4.59255 4.89401 4.93707 5.03891 5.15637 5.24756 5.31041 5.37549 5.39066 5.53530 5.64247 5.67262 5.69804 5.74554 5.88591 5.93368 6.02673 6.35245 6.46419 6.74265 6.84733 7.17881 7.26348 7.31733 7.72691 8.11654 8.46990 8.94746 9.52788 11.03730 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026600 B = 0.003427 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.383951 B = 8167.347117 C = 8814.136282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.131 4.131 3 H 0.107 0.893 4 C -0.155 4.155 5 C -0.074 4.074 6 H 0.135 0.865 7 C 0.199 3.801 8 N -0.389 5.389 9 O 0.079 5.921 10 C 0.208 3.792 11 C 0.184 3.816 12 H 0.127 0.873 13 N -0.839 5.839 14 C -0.156 4.156 15 C -0.100 4.100 16 C -0.013 4.013 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.266 1.266 24 H -0.287 1.287 25 N -0.480 5.480 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.348 0.652 32 H 0.365 0.635 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.008 -9.616 -19.173 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.151 4.151 3 H 0.125 0.875 4 C -0.193 4.193 5 C -0.094 4.094 6 H 0.152 0.848 7 C -0.073 4.073 8 N -0.097 5.097 9 O 0.021 5.979 10 C -0.013 4.013 11 C 0.070 3.930 12 H 0.144 0.856 13 N -0.373 5.373 14 C -0.196 4.196 15 C -0.138 4.138 16 C -0.051 4.051 17 C -0.561 4.561 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.191 1.191 24 H -0.213 1.213 25 N -0.213 5.213 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.161 0.839 32 H 0.182 0.818 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.029 0.971 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.637 -10.190 -19.969 25.259 hybrid contribution 0.308 1.900 0.186 1.934 sum -11.329 -8.290 -19.783 24.258 Atomic orbital electron populations 1.21397 0.91725 1.02381 1.02514 1.22519 0.95813 0.94546 1.02172 0.87535 1.23256 1.03215 1.01196 0.91597 1.20168 0.91637 1.03961 0.93632 0.84765 1.24753 0.95911 0.99440 0.87164 1.74545 0.99643 1.20726 1.14818 1.85261 1.36054 1.61849 1.14693 1.28883 0.89688 0.92310 0.90394 1.20085 0.90000 0.97197 0.85685 0.85564 1.58901 1.03380 1.59336 1.15693 1.22593 1.03000 0.93764 1.00259 1.21481 0.99241 1.00648 0.92447 1.19559 0.96787 0.91724 0.96996 1.21125 1.39431 0.94548 1.00984 0.90941 1.25036 0.94579 0.99145 0.94715 1.69914 1.43555 1.25665 1.14970 0.86784 0.79601 0.83367 0.79562 1.20292 1.19089 1.21328 1.71816 1.12902 1.21358 1.15234 0.91635 0.91606 0.92089 0.87861 0.87464 0.83945 0.81810 0.91009 0.91318 0.92489 0.92015 0.96561 0.97076 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.19 37.16 0.38 -0.43 16 2 C -0.13 -1.15 6.11 -90.58 -0.55 -1.70 16 3 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.15 -1.30 9.79 -26.69 -0.26 -1.56 16 5 C -0.07 -0.77 6.05 -91.77 -0.56 -1.33 16 6 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 7 C 0.20 2.76 7.74 -156.37 -1.21 1.55 16 8 N -0.39 -5.65 11.77 30.90 0.36 -5.28 16 9 O 0.08 1.13 11.29 18.12 0.20 1.33 16 10 C 0.21 2.92 7.32 -13.06 -0.10 2.82 16 11 C 0.18 2.30 3.35 -68.87 -0.23 2.07 16 12 H 0.13 1.55 8.14 -51.93 -0.42 1.12 16 13 N -0.84 -9.38 9.17 -5.66 -0.05 -9.43 16 14 C -0.16 -2.21 4.84 -26.74 -0.13 -2.34 16 15 C -0.10 -1.74 4.92 -26.73 -0.13 -1.87 16 16 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 17 C -0.52 -14.44 9.66 -34.44 -0.33 -14.78 16 18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 21 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 N -0.48 -7.14 11.55 -9.87 -0.11 -7.25 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 29 H 0.10 0.97 7.92 -51.93 -0.41 0.56 16 30 H 0.11 0.66 8.05 -51.93 -0.42 0.24 16 31 H 0.35 3.60 8.98 -39.29 -0.35 3.24 16 32 H 0.36 3.81 7.55 -39.29 -0.30 3.51 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.93 6.87 -51.93 -0.36 0.57 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 38 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -31.43 328.91 -7.85 -39.28 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.98 Total: 2.46 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -3.33 Total: -16.16 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.97 Total: -48.65 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.43 -7.85 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848624250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.837 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds