Wall clock time and date at job start Mon Mar 30 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 115.55489 * 2 1 4 4 C 1.53079 * 117.51003 * 214.27778 * 2 1 3 5 5 C 1.53002 * 59.98602 * 252.52571 * 4 2 1 6 6 H 1.08995 * 117.49731 * 107.49665 * 5 4 2 7 7 C 1.50697 * 117.50200 * 252.50073 * 5 4 2 8 8 N 1.29954 * 126.28834 * 8.76893 * 7 5 4 9 9 O 1.21296 * 110.24970 * 179.68035 * 8 7 5 10 10 C 1.33638 * 109.81265 * 0.47626 * 9 8 7 11 11 C 1.50700 * 126.54840 * 179.80121 * 10 9 8 12 12 H 1.09005 * 109.46978 * 194.68127 * 11 10 9 13 13 N 1.46901 * 109.47070 * 314.67873 * 11 10 9 14 14 C 1.52993 * 109.47590 * 74.68359 * 11 10 9 15 15 C 1.52996 * 109.47473 * 174.99796 * 14 11 10 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 14 11 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 N 1.31130 * 106.89820 * 359.52872 * 10 9 8 26 26 H 1.08992 * 109.47183 * 274.33307 * 1 2 3 27 27 H 1.09002 * 109.46466 * 34.32833 * 1 2 3 28 28 H 1.08994 * 109.47188 * 154.32191 * 1 2 3 29 29 H 1.09003 * 117.51352 * 145.05044 * 4 2 1 30 30 H 1.08993 * 117.49813 * 0.02562 * 4 2 1 31 31 H 1.00896 * 110.99542 * 60.00609 * 13 11 10 32 32 H 1.00902 * 110.99903 * 183.95968 * 13 11 10 33 33 H 1.09000 * 109.47250 * 54.99811 * 14 11 10 34 34 H 1.09004 * 109.46862 * 294.99834 * 14 11 10 35 35 H 1.09004 * 109.47368 * 59.99787 * 15 14 11 36 36 H 1.08996 * 109.47261 * 300.00171 * 15 14 11 37 37 H 1.09000 * 109.46986 * 60.00254 * 16 15 14 38 38 H 1.08993 * 109.47662 * 300.00031 * 16 15 14 39 39 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2371 -1.1219 -0.7647 5 6 2.2364 -1.1209 0.7654 6 1 1.6111 -1.8581 1.2688 7 6 3.5289 -0.7807 1.4616 8 7 4.6107 -0.3318 0.8987 9 8 5.4735 -0.1508 1.7319 10 6 5.0133 -0.4868 2.9407 11 6 5.7711 -0.4146 4.2413 12 1 5.2415 -0.9874 5.0027 13 7 7.1168 -0.9738 4.0556 14 6 5.8823 1.0448 4.6866 15 6 6.5409 1.1085 6.0661 16 6 6.6526 2.5681 6.5112 17 6 7.3008 2.6306 7.8703 18 1 7.6032 1.7204 8.3667 19 6 7.5077 3.8499 8.4798 20 7 8.0738 3.9045 9.6656 21 14 6.9841 5.4242 7.6215 22 1 8.1045 5.9302 6.7887 23 1 5.8092 5.1487 6.7560 24 1 6.6220 6.4450 8.6374 25 7 3.7745 -0.8855 2.7797 26 1 -0.3633 0.0776 1.0246 27 1 -0.3632 0.8487 -0.5796 28 1 -0.3633 -0.9261 -0.4453 29 1 3.1725 -0.8766 -1.2677 30 1 1.6120 -1.8595 -1.2679 31 1 7.6283 -0.4596 3.3543 32 1 7.6226 -0.9962 4.9284 33 1 4.8868 1.4857 4.7387 34 1 6.4878 1.5985 3.9690 35 1 7.5364 0.6676 6.0142 36 1 5.9354 0.5548 6.7837 37 1 5.6573 3.0093 6.5631 38 1 7.2583 3.1214 5.7936 39 1 8.2197 4.7623 10.0943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848624250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:35 Heat of formation + Delta-G solvation = 48.550564 kcal Electronic energy + Delta-G solvation = -19322.143925 eV Core-core repulsion = 16267.149786 eV Total energy + Delta-G solvation = -3054.994140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.69183 -39.20840 -38.52156 -36.51621 -35.48534 -33.66551 -32.67113 -29.82587 -29.58573 -27.18582 -25.96147 -24.76503 -23.41154 -21.97040 -21.81077 -20.90753 -19.18010 -18.85281 -18.71396 -17.51268 -16.70232 -16.37406 -16.25177 -15.50499 -15.20441 -15.00536 -14.62418 -14.35360 -14.16899 -13.84258 -13.76215 -13.52824 -13.13063 -13.04221 -12.84996 -12.56917 -12.46307 -12.41797 -12.19343 -11.85025 -11.76406 -11.48835 -11.45076 -11.29012 -11.22840 -10.76081 -10.62907 -9.87531 -8.29073 -6.32530 0.01209 1.03126 1.34988 1.37123 1.48111 1.69509 2.34001 2.35549 2.67215 2.95886 3.06814 3.49869 3.59499 3.72177 3.77616 3.82098 4.02877 4.15384 4.28926 4.37716 4.47368 4.59125 4.68043 4.70824 4.80072 4.89212 4.91180 4.98373 5.02481 5.04451 5.11669 5.12086 5.34159 5.51528 5.59115 5.67386 5.93211 6.28833 6.40655 6.76526 7.05487 7.32407 8.87542 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026600 B = 0.003427 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.383951 B = 8167.347117 C = 8814.136282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.126 4.126 3 H 0.091 0.909 4 C -0.141 4.141 5 C -0.096 4.096 6 H 0.146 0.854 7 C 0.196 3.804 8 N -0.404 5.404 9 O 0.072 5.928 10 C 0.208 3.792 11 C 0.196 3.804 12 H 0.131 0.869 13 N -0.837 5.837 14 C -0.143 4.143 15 C -0.092 4.092 16 C -0.014 4.014 17 C -0.530 4.530 18 H 0.038 0.962 19 C 0.003 3.997 20 N -0.951 5.951 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.249 1.249 24 H -0.286 1.286 25 N -0.499 5.499 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.354 0.646 32 H 0.370 0.630 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.018 0.982 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -9.636 -21.323 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.146 4.146 3 H 0.109 0.891 4 C -0.178 4.178 5 C -0.115 4.115 6 H 0.164 0.836 7 C -0.076 4.076 8 N -0.114 5.114 9 O 0.017 5.983 10 C -0.013 4.013 11 C 0.081 3.919 12 H 0.149 0.851 13 N -0.372 5.372 14 C -0.183 4.183 15 C -0.130 4.130 16 C -0.052 4.052 17 C -0.568 4.568 18 H 0.056 0.944 19 C -0.194 4.194 20 N -0.592 5.592 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.173 1.173 24 H -0.212 1.212 25 N -0.233 5.233 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.153 0.847 31 H 0.168 0.832 32 H 0.188 0.812 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.037 0.963 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.959 -10.222 -22.131 27.608 hybrid contribution 0.749 1.830 0.887 2.167 sum -12.210 -8.392 -21.245 25.901 Atomic orbital electron populations 1.21413 0.89846 1.03671 1.02718 1.22572 0.97116 0.93554 1.01319 0.89095 1.23337 1.02995 1.01390 0.90125 1.20443 0.90823 1.05452 0.94821 0.83633 1.25379 0.96783 0.98456 0.86998 1.74533 1.00027 1.21741 1.15115 1.85236 1.36174 1.62076 1.14775 1.29076 0.89668 0.91929 0.90613 1.19943 0.90676 0.96074 0.85165 0.85103 1.58886 1.02949 1.59166 1.16190 1.22405 1.02442 0.95126 0.98376 1.21312 1.00296 0.97233 0.94141 1.19543 0.95974 0.95323 0.94336 1.21537 1.38944 0.93288 1.03032 0.94408 1.26003 0.94796 1.03169 0.95412 1.70068 1.45538 1.26693 1.16939 0.85699 0.79969 0.78602 0.78613 1.19173 1.17287 1.21222 1.71826 1.13366 1.22090 1.15978 0.91891 0.90742 0.90463 0.89078 0.84740 0.83222 0.81214 0.91453 0.90579 0.91517 0.92290 0.96680 0.96330 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.19 71.98 0.73 -0.55 16 2 C -0.13 -2.01 6.11 -10.76 -0.07 -2.07 16 3 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.14 -2.09 9.79 30.62 0.30 -1.79 16 5 C -0.10 -1.85 6.05 -11.54 -0.07 -1.92 16 6 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 7 C 0.20 5.25 7.74 138.46 1.07 6.32 16 8 N -0.40 -11.45 11.77 -60.33 -0.71 -12.16 16 9 O 0.07 2.01 11.29 74.89 0.85 2.85 16 10 C 0.21 5.59 7.32 88.38 0.65 6.23 16 11 C 0.20 4.58 3.35 44.17 0.15 4.73 16 12 H 0.13 2.99 8.14 -2.38 -0.02 2.97 16 13 N -0.84 -17.27 9.17 -171.80 -1.58 -18.84 16 14 C -0.14 -3.80 4.84 30.59 0.15 -3.65 16 15 C -0.09 -3.06 4.92 30.59 0.15 -2.91 16 16 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 17 C -0.53 -29.55 9.66 25.60 0.25 -29.30 16 18 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 19 C 0.00 0.16 5.47 84.66 0.46 0.63 16 20 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 21 Si 0.95 43.79 27.47 68.60 1.88 45.67 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.25 -10.74 6.54 99.48 0.65 -10.08 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 25 N -0.50 -14.36 11.55 -303.20 -3.50 -17.87 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.59 7.90 -2.39 -0.02 0.57 16 29 H 0.09 1.60 7.92 -2.39 -0.02 1.58 16 30 H 0.13 1.23 8.05 -2.39 -0.02 1.21 16 31 H 0.35 6.67 8.98 -89.70 -0.81 5.87 16 32 H 0.37 7.09 7.55 -89.69 -0.68 6.41 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.07 2.08 6.87 -2.39 -0.02 2.06 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 38 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 39 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -67.97 328.91 0.66 -67.32 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -0.48 Total: 16.64 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 3.89 Total: -24.79 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -5.49 Total: -107.69 kcal Atomic # 8 Polarization: 2.01 SS G_CDS: 0.85 Total: 2.85 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -67.97 0.66 -67.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848624250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.866 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds