Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 115.55205 * 2 1 4 4 C 1.53075 * 117.53043 * 214.29228 * 2 1 3 5 5 C 1.52997 * 59.98367 * 252.53189 * 4 2 1 6 6 H 1.09003 * 117.49873 * 252.50231 * 5 4 2 7 7 C 1.50705 * 117.50300 * 107.50260 * 5 4 2 8 8 N 1.29943 * 126.28491 * 351.22792 * 7 5 4 9 9 O 1.21299 * 110.25099 * 180.02562 * 8 7 5 10 10 C 1.33645 * 109.80816 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.54647 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46611 * 165.02284 * 11 10 9 13 13 N 1.46892 * 109.47166 * 45.02717 * 11 10 9 14 14 C 1.52993 * 109.47027 * 285.02468 * 11 10 9 15 15 C 1.53008 * 109.46915 * 185.00274 * 14 11 10 16 16 C 1.53002 * 109.46805 * 179.97438 * 15 14 11 17 17 C 1.50702 * 109.46521 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00453 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99785 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00122 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47368 * 59.99960 * 21 19 17 23 23 H 1.48503 * 109.47357 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47142 * 299.99846 * 21 19 17 25 25 N 1.31129 * 106.90119 * 0.22881 * 10 9 8 26 26 H 1.09004 * 109.47040 * 274.32820 * 1 2 3 27 27 H 1.09000 * 109.47656 * 34.32464 * 1 2 3 28 28 H 1.09004 * 109.47824 * 154.32643 * 1 2 3 29 29 H 1.08996 * 117.49550 * 145.04656 * 4 2 1 30 30 H 1.09005 * 117.51296 * 0.02562 * 4 2 1 31 31 H 1.00901 * 111.00494 * 299.99722 * 13 11 10 32 32 H 1.00901 * 111.00555 * 63.95142 * 13 11 10 33 33 H 1.09005 * 109.47601 * 304.99720 * 14 11 10 34 34 H 1.08998 * 109.47582 * 65.00209 * 14 11 10 35 35 H 1.08999 * 109.46674 * 299.99713 * 15 14 11 36 36 H 1.08996 * 109.47104 * 60.00149 * 15 14 11 37 37 H 1.08992 * 109.47611 * 299.99744 * 16 15 14 38 38 H 1.08996 * 109.47078 * 60.00243 * 16 15 14 39 39 H 0.96993 * 119.99535 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2375 -1.1215 -0.7648 5 6 2.2364 -1.1209 0.7652 6 1 3.1711 -0.8747 1.2691 7 6 1.3719 -2.1406 1.4609 8 7 0.5007 -2.9229 0.8975 9 8 -0.0308 -3.6276 1.7295 10 6 0.4665 -3.3538 2.9394 11 6 0.0740 -4.0066 4.2398 12 1 0.8190 -3.7761 5.0013 13 7 -0.0021 -5.4617 4.0538 14 6 -1.2907 -3.4772 4.6845 15 6 -1.6328 -4.0441 6.0639 16 6 -2.9974 -3.5141 6.5090 17 6 -3.3345 -4.0731 7.8673 18 1 -2.6448 -4.7399 8.3633 19 6 -4.5241 -3.7339 8.4764 20 7 -5.3643 -2.9222 7.8722 21 14 -4.9424 -4.4273 10.1597 22 1 -3.9064 -4.0098 11.1385 23 1 -6.2668 -3.9128 10.5919 24 1 -4.9863 -5.9099 10.0875 25 7 1.3573 -2.4049 2.7795 26 1 -0.3633 0.0776 1.0248 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3635 -0.9262 -0.4452 29 1 3.1728 -0.8754 -1.2675 30 1 1.6130 -1.8593 -1.2685 31 1 -0.6864 -5.7013 3.3521 32 1 0.9023 -5.8446 3.8224 33 1 -1.2589 -2.3888 4.7368 34 1 -2.0513 -3.7843 3.9667 35 1 -1.6647 -5.1324 6.0116 36 1 -0.8724 -3.7369 6.7818 37 1 -2.9651 -2.4259 6.5613 38 1 -3.7581 -3.8210 5.7912 39 1 -6.2009 -2.6834 8.3009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848624252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 69.816342 kcal Electronic energy + Delta-G solvation = -19503.399556 eV Core-core repulsion = 16449.327570 eV Total energy + Delta-G solvation = -3054.071986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.65558 -38.54412 -37.11106 -35.37590 -33.65742 -31.84011 -31.29443 -28.96754 -28.03485 -25.49910 -25.09805 -23.51613 -22.21041 -21.24478 -20.08510 -19.73373 -18.13085 -17.55607 -16.42202 -16.13167 -15.99261 -15.45258 -14.66690 -14.57341 -14.31312 -13.57310 -13.35231 -13.00199 -12.66822 -12.47294 -12.30909 -12.04634 -11.85572 -11.71179 -11.69275 -11.21134 -11.12585 -10.77400 -10.69151 -10.56156 -10.50603 -10.42191 -9.82162 -9.63512 -9.22720 -9.15153 -8.97358 -8.28862 -5.94629 -3.96402 1.03925 2.03814 2.72770 3.29773 3.37415 3.41448 3.44106 3.44452 3.92778 4.31013 4.37309 4.46978 4.51371 4.54800 4.96003 5.04620 5.06707 5.30444 5.36662 5.41292 5.43733 5.50550 5.57547 5.67371 5.72359 5.85676 5.94660 5.99949 6.05959 6.38797 6.75675 6.87299 6.98096 7.17871 7.27992 7.74624 7.89688 8.06603 8.09066 8.49353 9.11045 9.67327 11.16836 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.003263 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.818984 B = 8580.255006 C = 9057.412635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 H 0.117 0.883 4 C -0.157 4.157 5 C -0.078 4.078 6 H 0.134 0.866 7 C 0.202 3.798 8 N -0.386 5.386 9 O 0.073 5.927 10 C 0.155 3.845 11 C 0.187 3.813 12 H 0.126 0.874 13 N -0.817 5.817 14 C -0.110 4.110 15 C -0.099 4.099 16 C 0.020 3.980 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 N -0.479 5.479 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.351 0.649 32 H 0.344 0.656 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.226 2.108 -16.450 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 H 0.135 0.865 4 C -0.194 4.194 5 C -0.098 4.098 6 H 0.152 0.848 7 C -0.070 4.070 8 N -0.095 5.095 9 O 0.016 5.984 10 C -0.068 4.068 11 C 0.072 3.928 12 H 0.144 0.856 13 N -0.346 5.346 14 C -0.149 4.149 15 C -0.137 4.137 16 C -0.017 4.017 17 C -0.556 4.556 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 N -0.212 5.212 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.959 2.427 -16.378 22.314 hybrid contribution -0.001 -0.126 0.074 0.146 sum 14.959 2.301 -16.305 22.246 Atomic orbital electron populations 1.21432 0.92273 1.02669 1.02264 1.22515 0.96084 0.94228 1.01973 0.86463 1.23260 1.03139 1.01486 0.91555 1.20197 0.99172 0.96757 0.93637 0.84838 1.24727 0.96783 0.98283 0.87245 1.74540 1.12152 1.07858 1.14917 1.85261 1.50453 1.47802 1.14846 1.30981 0.90174 0.93547 0.92131 1.20697 1.01511 0.86147 0.84418 0.85617 1.58866 1.13010 1.07908 1.54800 1.21828 0.91835 1.00508 1.00698 1.21544 0.99907 1.00752 0.91515 1.19112 0.90539 0.96148 0.95944 1.21240 1.03305 1.28166 1.02889 0.92637 1.25033 0.96488 0.95269 0.97772 1.69961 1.10164 1.35257 1.38347 0.86670 0.77435 0.79395 0.84558 1.20276 1.21401 1.20229 1.71860 1.20021 1.14273 1.15063 0.92320 0.91490 0.91819 0.87555 0.87826 0.83457 0.84309 0.91430 0.91545 0.91604 0.93359 0.96889 0.96701 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.13 37.16 0.34 -0.96 16 2 C -0.13 -1.13 6.41 -90.58 -0.58 -1.71 16 3 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.16 -1.30 9.79 -26.69 -0.26 -1.56 16 5 C -0.08 -0.80 6.33 -91.77 -0.58 -1.38 16 6 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 7 C 0.20 2.72 6.88 -156.37 -1.08 1.65 16 8 N -0.39 -5.39 10.91 30.90 0.34 -5.05 16 9 O 0.07 1.01 11.29 18.10 0.20 1.21 16 10 C 0.16 2.10 7.31 -13.06 -0.10 2.00 16 11 C 0.19 2.41 3.29 -68.87 -0.23 2.18 16 12 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 13 N -0.82 -9.13 8.67 -5.66 -0.05 -9.18 16 14 C -0.11 -1.75 4.84 -26.73 -0.13 -1.88 16 15 C -0.10 -1.96 5.04 -26.73 -0.13 -2.10 16 16 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 17 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.59 5.46 -17.81 -0.10 1.50 16 20 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 21 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 N -0.48 -6.96 11.55 -9.87 -0.11 -7.07 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.71 7.21 -51.93 -0.37 0.34 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.97 7.83 -51.93 -0.41 0.56 16 31 H 0.35 3.67 8.98 -39.29 -0.35 3.32 16 32 H 0.34 3.11 9.06 -39.29 -0.36 2.76 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.30 7.75 -51.93 -0.40 0.89 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -31.70 331.58 -8.29 -39.99 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.08 Total: 1.71 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -3.30 Total: -16.91 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.91 Total: -47.78 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: 0.20 Total: 1.21 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.70 -8.29 -39.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848624252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.808 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds