Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 115.55205 * 2 1 4 4 C 1.53075 * 117.53043 * 214.29228 * 2 1 3 5 5 C 1.52997 * 59.98367 * 252.53189 * 4 2 1 6 6 H 1.09003 * 117.49873 * 252.50231 * 5 4 2 7 7 C 1.50705 * 117.50300 * 107.50260 * 5 4 2 8 8 N 1.29943 * 126.28491 * 351.22792 * 7 5 4 9 9 O 1.21299 * 110.25099 * 180.02562 * 8 7 5 10 10 C 1.33645 * 109.80816 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.54647 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46611 * 165.02284 * 11 10 9 13 13 N 1.46892 * 109.47166 * 45.02717 * 11 10 9 14 14 C 1.52993 * 109.47027 * 285.02468 * 11 10 9 15 15 C 1.53008 * 109.46915 * 185.00274 * 14 11 10 16 16 C 1.53002 * 109.46805 * 179.97438 * 15 14 11 17 17 C 1.50702 * 109.46521 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00453 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99785 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00122 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47368 * 59.99960 * 21 19 17 23 23 H 1.48503 * 109.47357 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47142 * 299.99846 * 21 19 17 25 25 N 1.31129 * 106.90119 * 0.22881 * 10 9 8 26 26 H 1.09004 * 109.47040 * 274.32820 * 1 2 3 27 27 H 1.09000 * 109.47656 * 34.32464 * 1 2 3 28 28 H 1.09004 * 109.47824 * 154.32643 * 1 2 3 29 29 H 1.08996 * 117.49550 * 145.04656 * 4 2 1 30 30 H 1.09005 * 117.51296 * 0.02562 * 4 2 1 31 31 H 1.00901 * 111.00494 * 299.99722 * 13 11 10 32 32 H 1.00901 * 111.00555 * 63.95142 * 13 11 10 33 33 H 1.09005 * 109.47601 * 304.99720 * 14 11 10 34 34 H 1.08998 * 109.47582 * 65.00209 * 14 11 10 35 35 H 1.08999 * 109.46674 * 299.99713 * 15 14 11 36 36 H 1.08996 * 109.47104 * 60.00149 * 15 14 11 37 37 H 1.08992 * 109.47611 * 299.99744 * 16 15 14 38 38 H 1.08996 * 109.47078 * 60.00243 * 16 15 14 39 39 H 0.96993 * 119.99535 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2375 -1.1215 -0.7648 5 6 2.2364 -1.1209 0.7652 6 1 3.1711 -0.8747 1.2691 7 6 1.3719 -2.1406 1.4609 8 7 0.5007 -2.9229 0.8975 9 8 -0.0308 -3.6276 1.7295 10 6 0.4665 -3.3538 2.9394 11 6 0.0740 -4.0066 4.2398 12 1 0.8190 -3.7761 5.0013 13 7 -0.0021 -5.4617 4.0538 14 6 -1.2907 -3.4772 4.6845 15 6 -1.6328 -4.0441 6.0639 16 6 -2.9974 -3.5141 6.5090 17 6 -3.3345 -4.0731 7.8673 18 1 -2.6448 -4.7399 8.3633 19 6 -4.5241 -3.7339 8.4764 20 7 -5.3643 -2.9222 7.8722 21 14 -4.9424 -4.4273 10.1597 22 1 -3.9064 -4.0098 11.1385 23 1 -6.2668 -3.9128 10.5919 24 1 -4.9863 -5.9099 10.0875 25 7 1.3573 -2.4049 2.7795 26 1 -0.3633 0.0776 1.0248 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3635 -0.9262 -0.4452 29 1 3.1728 -0.8754 -1.2675 30 1 1.6130 -1.8593 -1.2685 31 1 -0.6864 -5.7013 3.3521 32 1 0.9023 -5.8446 3.8224 33 1 -1.2589 -2.3888 4.7368 34 1 -2.0513 -3.7843 3.9667 35 1 -1.6647 -5.1324 6.0116 36 1 -0.8724 -3.7369 6.7818 37 1 -2.9651 -2.4259 6.5613 38 1 -3.7581 -3.8210 5.7912 39 1 -6.2009 -2.6834 8.3009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848624252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 47.926965 kcal Electronic energy + Delta-G solvation = -19504.348751 eV Core-core repulsion = 16449.327570 eV Total energy + Delta-G solvation = -3055.021181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.70774 -39.30112 -38.31569 -36.44831 -35.52486 -33.50226 -32.48922 -29.75421 -29.64417 -26.92013 -26.15852 -24.91086 -23.48892 -22.06694 -21.74500 -20.69035 -19.20927 -18.58337 -18.36325 -17.32681 -16.89917 -16.56006 -16.35856 -15.76963 -15.49221 -14.80446 -14.41874 -14.36769 -13.95310 -13.63178 -13.45637 -13.32426 -13.19563 -12.94123 -12.85549 -12.51693 -12.48433 -12.40425 -12.25167 -12.11949 -11.70146 -11.38243 -11.25640 -11.24175 -11.04645 -10.62959 -10.50096 -10.08447 -8.15568 -6.25929 -0.01891 1.02579 1.42943 1.46173 1.53811 1.67161 2.38961 2.45380 2.67040 2.98343 3.17757 3.45646 3.57203 3.60267 3.82646 3.87373 4.10566 4.17748 4.28795 4.48726 4.60066 4.63309 4.66639 4.69086 4.77590 4.90057 4.92132 4.94573 5.01259 5.13726 5.24393 5.26889 5.36061 5.62276 5.85037 5.92201 5.95673 6.31458 6.41752 6.92172 7.04152 7.43161 8.96220 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.003263 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.818984 B = 8580.255006 C = 9057.412635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.125 4.125 3 H 0.144 0.856 4 C -0.140 4.140 5 C -0.101 4.101 6 H 0.148 0.852 7 C 0.198 3.802 8 N -0.398 5.398 9 O 0.067 5.933 10 C 0.158 3.842 11 C 0.203 3.797 12 H 0.134 0.866 13 N -0.817 5.817 14 C -0.101 4.101 15 C -0.083 4.083 16 C 0.021 3.979 17 C -0.540 4.540 18 H 0.063 0.937 19 C -0.004 4.004 20 N -0.937 5.937 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.266 1.266 25 N -0.497 5.497 26 H 0.035 0.965 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.356 0.644 32 H 0.359 0.641 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.053 0.947 37 H -0.014 1.014 38 H -0.010 1.010 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.834 1.784 -16.535 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.144 4.144 3 H 0.162 0.838 4 C -0.178 4.178 5 C -0.120 4.120 6 H 0.166 0.834 7 C -0.074 4.074 8 N -0.109 5.109 9 O 0.012 5.988 10 C -0.065 4.065 11 C 0.087 3.913 12 H 0.152 0.848 13 N -0.348 5.348 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.016 4.016 17 C -0.578 4.578 18 H 0.081 0.919 19 C -0.201 4.201 20 N -0.577 5.577 21 Si 0.788 3.212 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.190 1.190 25 N -0.231 5.231 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.154 0.846 30 H 0.108 0.892 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.004 0.996 38 H 0.008 0.992 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.582 2.075 -16.469 23.463 hybrid contribution -0.523 -0.001 0.052 0.525 sum 16.059 2.075 -16.417 23.059 Atomic orbital electron populations 1.21420 0.93646 1.02664 1.00936 1.22648 0.95081 0.95308 1.01353 0.83838 1.23330 1.03965 1.00410 0.90056 1.20500 0.99567 0.97050 0.94915 0.83436 1.25338 0.96604 0.98391 0.87046 1.74537 1.12779 1.08427 1.15145 1.85241 1.50627 1.48004 1.14934 1.31018 0.90007 0.93302 0.92189 1.20411 0.99492 0.86962 0.84401 0.84797 1.58846 1.14234 1.06550 1.55160 1.21606 0.93908 0.99891 0.98618 1.21274 0.96491 1.00728 0.93557 1.19052 0.93275 0.94486 0.94814 1.21728 1.03693 1.28278 1.04061 0.91913 1.26002 0.96409 0.95530 1.02148 1.70103 1.10679 1.36649 1.40312 0.85522 0.77308 0.79027 0.79327 1.19139 1.21103 1.19043 1.71867 1.20715 1.14676 1.15841 0.94580 0.89623 0.93404 0.84571 0.89185 0.82901 0.82607 0.92329 0.91728 0.91197 0.92860 0.99562 0.99185 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.13 71.98 0.66 -1.88 16 2 C -0.12 -1.95 6.41 -10.77 -0.07 -2.02 16 3 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.14 -2.01 9.79 30.62 0.30 -1.71 16 5 C -0.10 -1.92 6.33 -11.54 -0.07 -1.99 16 6 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 7 C 0.20 5.24 6.88 138.46 0.95 6.19 16 8 N -0.40 -11.08 10.91 -60.34 -0.66 -11.74 16 9 O 0.07 1.83 11.29 74.81 0.84 2.67 16 10 C 0.16 4.21 7.31 88.38 0.65 4.85 16 11 C 0.20 5.02 3.29 44.17 0.15 5.17 16 12 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 13 N -0.82 -17.06 8.67 -171.81 -1.49 -18.55 16 14 C -0.10 -3.24 4.84 30.59 0.15 -3.09 16 15 C -0.08 -3.26 5.04 30.60 0.15 -3.11 16 16 C 0.02 1.10 4.97 29.85 0.15 1.25 16 17 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 18 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 19 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 20 N -0.94 -57.88 13.29 21.45 0.28 -57.60 16 21 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 N -0.50 -14.18 11.55 -303.20 -3.50 -17.68 16 26 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.07 7.21 -2.38 -0.02 1.05 16 29 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.57 7.83 -2.38 -0.02 1.56 16 31 H 0.36 7.02 8.98 -89.69 -0.81 6.21 16 32 H 0.36 5.82 9.06 -89.69 -0.81 5.01 16 33 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.70 7.75 -2.39 -0.02 2.68 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 37 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -68.88 331.58 0.65 -68.23 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -0.56 Total: 14.77 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 3.71 Total: -26.74 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -5.37 Total: -105.57 kcal Atomic # 8 Polarization: 1.83 SS G_CDS: 0.84 Total: 2.67 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.88 0.65 -68.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848624252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.159 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds