Wall clock time and date at job start Mon Mar 30 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 115.55217 * 2 1 4 4 C 1.53074 * 117.51195 * 214.28083 * 2 1 3 5 5 C 1.52996 * 59.98393 * 252.52303 * 4 2 1 6 6 H 1.08997 * 117.49796 * 107.50627 * 5 4 2 7 7 C 1.50701 * 117.49859 * 252.49957 * 5 4 2 8 8 N 1.29951 * 126.28636 * 8.72265 * 7 5 4 9 9 O 1.21301 * 110.24960 * 180.02562 * 8 7 5 10 10 C 1.33642 * 109.81428 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.55602 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47556 * 165.02020 * 11 10 9 13 13 N 1.46905 * 109.46910 * 45.02058 * 11 10 9 14 14 C 1.52998 * 109.47049 * 285.02341 * 11 10 9 15 15 C 1.53006 * 109.47150 * 184.99898 * 14 11 10 16 16 C 1.52998 * 109.47150 * 180.02562 * 15 14 11 17 17 C 1.50694 * 109.47203 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99695 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00090 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99982 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99877 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47374 * 89.99481 * 21 19 17 23 23 H 1.48504 * 109.46880 * 209.99347 * 21 19 17 24 24 H 1.48496 * 109.47177 * 329.99105 * 21 19 17 25 25 N 1.31133 * 106.89623 * 0.22505 * 10 9 8 26 26 H 1.08995 * 109.46795 * 274.32839 * 1 2 3 27 27 H 1.09002 * 109.47104 * 34.32595 * 1 2 3 28 28 H 1.08997 * 109.47137 * 154.32701 * 1 2 3 29 29 H 1.09000 * 117.51180 * 145.04304 * 4 2 1 30 30 H 1.09006 * 117.49347 * 0.02562 * 4 2 1 31 31 H 1.00901 * 110.99869 * 300.00472 * 13 11 10 32 32 H 1.00896 * 110.99543 * 63.95595 * 13 11 10 33 33 H 1.09001 * 109.47115 * 304.99584 * 14 11 10 34 34 H 1.09003 * 109.47470 * 64.99668 * 14 11 10 35 35 H 1.09001 * 109.46854 * 299.99845 * 15 14 11 36 36 H 1.08993 * 109.47097 * 59.99572 * 15 14 11 37 37 H 1.08998 * 109.47355 * 300.00155 * 16 15 14 38 38 H 1.09003 * 109.46945 * 59.99797 * 16 15 14 39 39 H 0.96993 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8582 1.2687 7 6 3.5290 -0.7806 1.4614 8 7 4.6110 -0.3324 0.8983 9 8 5.4759 -0.1576 1.7306 10 6 5.0140 -0.4881 2.9403 11 6 5.7722 -0.4172 4.2408 12 1 5.0729 -0.4911 5.0736 13 7 6.4928 0.8606 4.3184 14 6 6.7731 -1.5722 4.3111 15 6 7.4541 -1.5742 5.6813 16 6 8.4555 -2.7288 5.7514 17 6 9.1267 -2.7304 7.1007 18 1 8.8648 -1.9829 7.8349 19 6 10.0742 -3.6868 7.3982 20 7 10.6603 -3.6878 8.5756 21 14 10.5265 -4.9801 6.1285 22 1 11.6500 -4.4832 5.2942 23 1 10.9373 -6.2291 6.8188 24 1 9.3518 -5.2563 5.2631 25 7 3.7766 -0.8910 2.7788 26 1 -0.3633 0.0776 1.0247 27 1 -0.3633 0.8487 -0.5795 28 1 -0.3633 -0.9262 -0.4452 29 1 3.1724 -0.8764 -1.2678 30 1 1.6119 -1.8594 -1.2680 31 1 7.1478 0.9532 3.5565 32 1 5.8496 1.6377 4.3388 33 1 6.2490 -2.5166 4.1646 34 1 7.5252 -1.4493 3.5318 35 1 7.9782 -0.6298 5.8278 36 1 6.7021 -1.6971 6.4606 37 1 7.9318 -3.6734 5.6046 38 1 9.2075 -2.6054 4.9721 39 1 11.3272 -4.3604 8.7847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848624254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:43 Heat of formation + Delta-G solvation = 71.480140 kcal Electronic energy + Delta-G solvation = -19275.523183 eV Core-core repulsion = 16221.523345 eV Total energy + Delta-G solvation = -3053.999839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.73117 -38.54691 -37.21165 -35.51256 -33.73478 -32.00275 -31.48979 -29.06034 -28.44421 -25.64465 -25.04298 -23.50691 -22.09777 -21.25925 -20.06821 -20.05028 -18.15333 -17.83900 -16.71245 -16.25420 -15.92479 -15.57715 -14.72796 -14.57123 -14.09199 -13.71874 -13.48887 -13.17223 -12.87221 -12.56816 -12.36104 -12.29697 -12.11277 -11.85228 -11.82729 -11.43587 -11.21771 -10.88705 -10.81867 -10.71801 -10.60622 -9.97430 -9.83771 -9.67583 -9.46440 -9.21258 -9.07842 -8.48593 -5.99173 -3.96392 0.95907 1.95822 2.64815 3.23147 3.34050 3.34339 3.41402 3.45239 3.84724 4.27208 4.36055 4.38025 4.41830 4.49682 4.80996 4.95366 4.99103 5.22701 5.26894 5.31159 5.32709 5.35214 5.50559 5.57599 5.64639 5.76605 5.80754 5.84918 5.92185 6.23456 6.60829 6.73067 6.79908 6.99090 7.17762 7.40472 7.52218 7.85479 8.01078 8.60436 9.07249 9.63859 11.14452 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.036252 B = 0.003171 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.179021 B = 8826.938822 C = 9157.188339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.130 4.130 3 H 0.106 0.894 4 C -0.155 4.155 5 C -0.075 4.075 6 H 0.135 0.865 7 C 0.199 3.801 8 N -0.388 5.388 9 O 0.074 5.926 10 C 0.155 3.845 11 C 0.188 3.812 12 H 0.128 0.872 13 N -0.816 5.816 14 C -0.113 4.113 15 C -0.092 4.092 16 C -0.016 4.016 17 C -0.516 4.516 18 H 0.073 0.927 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.879 3.121 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.266 1.266 25 N -0.478 5.478 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.351 0.649 32 H 0.345 0.655 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.013 0.987 38 H 0.010 0.990 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 8.422 -17.929 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 H 0.124 0.876 4 C -0.192 4.192 5 C -0.095 4.095 6 H 0.153 0.847 7 C -0.073 4.073 8 N -0.097 5.097 9 O 0.017 5.983 10 C -0.069 4.069 11 C 0.073 3.927 12 H 0.146 0.854 13 N -0.345 5.345 14 C -0.152 4.152 15 C -0.129 4.129 16 C -0.054 4.054 17 C -0.554 4.554 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.191 1.191 25 N -0.211 5.211 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.028 0.972 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.186 8.057 -17.835 26.716 hybrid contribution 0.055 -0.610 -1.390 1.519 sum -18.131 7.447 -19.225 27.456 Atomic orbital electron populations 1.21400 0.91686 1.02463 1.02478 1.22507 0.95821 0.94436 1.02243 0.87634 1.23265 1.03224 1.01163 0.91590 1.20189 0.91637 1.03958 0.93732 0.84705 1.24833 0.95912 0.99235 0.87354 1.74546 0.99467 1.20892 1.14757 1.85260 1.35916 1.62428 1.14692 1.31001 0.90376 0.93435 0.92094 1.20677 0.94085 0.93085 0.84876 0.85419 1.58866 1.20559 1.02506 1.52613 1.21864 0.96725 0.94785 1.01846 1.21368 0.98324 1.01070 0.92183 1.19603 0.94362 0.93878 0.97513 1.21162 1.21111 1.14478 0.98683 0.90917 1.25046 0.95882 0.97538 0.95178 1.69921 1.27621 1.35649 1.21272 0.86786 0.79111 0.81424 0.81987 1.20365 1.21503 1.19097 1.71866 1.13276 1.20670 1.15256 0.91668 0.91597 0.92016 0.87860 0.87380 0.83459 0.84163 0.91381 0.91518 0.91011 0.92687 0.96916 0.97170 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.19 37.16 0.38 -0.34 16 2 C -0.13 -1.04 6.11 -90.58 -0.55 -1.60 16 3 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.15 -1.25 9.79 -26.69 -0.26 -1.51 16 5 C -0.08 -0.75 6.05 -91.77 -0.56 -1.31 16 6 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 7 C 0.20 2.63 7.74 -156.37 -1.21 1.42 16 8 N -0.39 -5.36 11.77 30.90 0.36 -5.00 16 9 O 0.07 0.99 11.29 18.10 0.20 1.20 16 10 C 0.15 2.01 7.31 -13.05 -0.10 1.92 16 11 C 0.19 2.30 3.29 -68.86 -0.23 2.07 16 12 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 13 N -0.82 -8.73 8.68 -5.65 -0.05 -8.78 16 14 C -0.11 -1.69 4.84 -26.73 -0.13 -1.82 16 15 C -0.09 -1.72 5.04 -26.73 -0.13 -1.86 16 16 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 17 C -0.52 -14.76 9.66 -34.44 -0.33 -15.10 16 18 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 19 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 20 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 21 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 25 N -0.48 -6.74 11.55 -9.86 -0.11 -6.85 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 29 H 0.10 0.94 7.91 -51.93 -0.41 0.53 16 30 H 0.11 0.66 8.05 -51.93 -0.42 0.24 16 31 H 0.35 3.47 8.98 -39.29 -0.35 3.12 16 32 H 0.35 3.00 9.06 -39.29 -0.36 2.64 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 38 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -32.37 330.86 -7.92 -40.29 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.09 Total: 1.09 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -3.33 Total: -16.83 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.97 Total: -48.03 kcal Atomic # 8 Polarization: 0.99 SS G_CDS: 0.20 Total: 1.20 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.37 -7.92 -40.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848624254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.767 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds