Wall clock time and date at job start Mon Mar 30 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 115.55217 * 2 1 4 4 C 1.53074 * 117.51195 * 214.28083 * 2 1 3 5 5 C 1.52996 * 59.98393 * 252.52303 * 4 2 1 6 6 H 1.08997 * 117.49796 * 107.50627 * 5 4 2 7 7 C 1.50701 * 117.49859 * 252.49957 * 5 4 2 8 8 N 1.29951 * 126.28636 * 8.72265 * 7 5 4 9 9 O 1.21301 * 110.24960 * 180.02562 * 8 7 5 10 10 C 1.33642 * 109.81428 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.55602 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47556 * 165.02020 * 11 10 9 13 13 N 1.46905 * 109.46910 * 45.02058 * 11 10 9 14 14 C 1.52998 * 109.47049 * 285.02341 * 11 10 9 15 15 C 1.53006 * 109.47150 * 184.99898 * 14 11 10 16 16 C 1.52998 * 109.47150 * 180.02562 * 15 14 11 17 17 C 1.50694 * 109.47203 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99695 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00090 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99982 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99877 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47374 * 89.99481 * 21 19 17 23 23 H 1.48504 * 109.46880 * 209.99347 * 21 19 17 24 24 H 1.48496 * 109.47177 * 329.99105 * 21 19 17 25 25 N 1.31133 * 106.89623 * 0.22505 * 10 9 8 26 26 H 1.08995 * 109.46795 * 274.32839 * 1 2 3 27 27 H 1.09002 * 109.47104 * 34.32595 * 1 2 3 28 28 H 1.08997 * 109.47137 * 154.32701 * 1 2 3 29 29 H 1.09000 * 117.51180 * 145.04304 * 4 2 1 30 30 H 1.09006 * 117.49347 * 0.02562 * 4 2 1 31 31 H 1.00901 * 110.99869 * 300.00472 * 13 11 10 32 32 H 1.00896 * 110.99543 * 63.95595 * 13 11 10 33 33 H 1.09001 * 109.47115 * 304.99584 * 14 11 10 34 34 H 1.09003 * 109.47470 * 64.99668 * 14 11 10 35 35 H 1.09001 * 109.46854 * 299.99845 * 15 14 11 36 36 H 1.08993 * 109.47097 * 59.99572 * 15 14 11 37 37 H 1.08998 * 109.47355 * 300.00155 * 16 15 14 38 38 H 1.09003 * 109.46945 * 59.99797 * 16 15 14 39 39 H 0.96993 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8582 1.2687 7 6 3.5290 -0.7806 1.4614 8 7 4.6110 -0.3324 0.8983 9 8 5.4759 -0.1576 1.7306 10 6 5.0140 -0.4881 2.9403 11 6 5.7722 -0.4172 4.2408 12 1 5.0729 -0.4911 5.0736 13 7 6.4928 0.8606 4.3184 14 6 6.7731 -1.5722 4.3111 15 6 7.4541 -1.5742 5.6813 16 6 8.4555 -2.7288 5.7514 17 6 9.1267 -2.7304 7.1007 18 1 8.8648 -1.9829 7.8349 19 6 10.0742 -3.6868 7.3982 20 7 10.6603 -3.6878 8.5756 21 14 10.5265 -4.9801 6.1285 22 1 11.6500 -4.4832 5.2942 23 1 10.9373 -6.2291 6.8188 24 1 9.3518 -5.2563 5.2631 25 7 3.7766 -0.8910 2.7788 26 1 -0.3633 0.0776 1.0247 27 1 -0.3633 0.8487 -0.5795 28 1 -0.3633 -0.9262 -0.4452 29 1 3.1724 -0.8764 -1.2678 30 1 1.6119 -1.8594 -1.2680 31 1 7.1478 0.9532 3.5565 32 1 5.8496 1.6377 4.3388 33 1 6.2490 -2.5166 4.1646 34 1 7.5252 -1.4493 3.5318 35 1 7.9782 -0.6298 5.8278 36 1 6.7021 -1.6971 6.4606 37 1 7.9318 -3.6734 5.6046 38 1 9.2075 -2.6054 4.9721 39 1 11.3272 -4.3604 8.7847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848624254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:43 Heat of formation + Delta-G solvation = 48.563589 kcal Electronic energy + Delta-G solvation = -19276.516920 eV Core-core repulsion = 16221.523345 eV Total energy + Delta-G solvation = -3054.993575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.73985 -39.23875 -38.34121 -36.51982 -35.51359 -33.70230 -32.65159 -29.99514 -29.60743 -26.99017 -25.98549 -24.77679 -23.35103 -21.96222 -21.68911 -20.96264 -19.21262 -18.83250 -18.75953 -17.32925 -16.75502 -16.58820 -16.29541 -15.75845 -15.25190 -14.88172 -14.67286 -14.24449 -13.90573 -13.78986 -13.66385 -13.44768 -13.15951 -13.01112 -12.87059 -12.47806 -12.41169 -12.37494 -12.18356 -11.90478 -11.73318 -11.38396 -11.32991 -11.24324 -11.16019 -10.71713 -10.63988 -10.09031 -8.24894 -6.27781 -0.04587 0.99000 1.37864 1.39584 1.51445 1.64581 2.36280 2.39423 2.63175 2.95555 3.10659 3.44728 3.53639 3.69583 3.74775 3.86375 4.10755 4.17737 4.26704 4.45118 4.57392 4.59737 4.67944 4.77868 4.87253 4.87828 4.89967 4.99127 5.06707 5.09621 5.12039 5.22125 5.32539 5.66387 5.72555 5.77099 5.92508 6.35348 6.41148 6.81238 7.01370 7.36458 8.92076 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.036252 B = 0.003171 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.179021 B = 8826.938822 C = 9157.188339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 H 0.094 0.906 4 C -0.145 4.145 5 C -0.098 4.098 6 H 0.144 0.856 7 C 0.195 3.805 8 N -0.403 5.403 9 O 0.070 5.930 10 C 0.160 3.840 11 C 0.200 3.800 12 H 0.133 0.867 13 N -0.819 5.819 14 C -0.104 4.104 15 C -0.081 4.081 16 C -0.016 4.016 17 C -0.527 4.527 18 H 0.033 0.967 19 C 0.000 4.000 20 N -0.954 5.954 21 Si 0.950 3.050 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.247 1.247 25 N -0.497 5.497 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.357 0.643 32 H 0.358 0.642 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.015 0.985 38 H 0.018 0.982 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.579 8.051 -20.266 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 H 0.112 0.888 4 C -0.182 4.182 5 C -0.117 4.117 6 H 0.161 0.839 7 C -0.077 4.077 8 N -0.113 5.113 9 O 0.015 5.985 10 C -0.063 4.063 11 C 0.085 3.915 12 H 0.150 0.850 13 N -0.350 5.350 14 C -0.143 4.143 15 C -0.119 4.119 16 C -0.053 4.053 17 C -0.565 4.565 18 H 0.052 0.948 19 C -0.196 4.196 20 N -0.595 5.595 21 Si 0.774 3.226 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.171 1.171 25 N -0.230 5.230 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.150 0.850 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.480 7.715 -20.181 29.091 hybrid contribution 0.440 -0.409 -0.590 0.842 sum -19.040 7.306 -20.772 29.110 Atomic orbital electron populations 1.21422 0.89820 1.03658 1.02802 1.22568 0.97091 0.93492 1.00882 0.88755 1.23339 1.03053 1.01628 0.90218 1.20443 0.90945 1.05579 0.94781 0.83858 1.25416 0.96744 0.98364 0.87209 1.74539 0.99850 1.21872 1.15060 1.85239 1.35932 1.62595 1.14727 1.31053 0.90266 0.92945 0.92080 1.20447 0.93455 0.92825 0.84767 0.84989 1.58857 1.20866 1.02408 1.52868 1.21662 0.97256 0.96041 0.99322 1.21158 0.97317 0.98841 0.94595 1.19588 0.95276 0.95898 0.94585 1.21553 1.21375 1.13344 1.00258 0.94827 1.26044 0.95905 1.00237 0.97439 1.70079 1.28706 1.37020 1.23704 0.85656 0.79600 0.78093 0.79264 1.19184 1.21220 1.17094 1.71878 1.13855 1.21339 1.15947 0.91739 0.90548 0.90723 0.89123 0.84975 0.82772 0.82697 0.91377 0.90776 0.91535 0.93181 0.96634 0.96395 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.19 71.98 0.73 -0.38 16 2 C -0.12 -1.73 6.11 -10.77 -0.07 -1.79 16 3 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.14 -2.07 9.79 30.62 0.30 -1.77 16 5 C -0.10 -1.81 6.05 -11.54 -0.07 -1.88 16 6 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 7 C 0.19 4.95 7.74 138.46 1.07 6.02 16 8 N -0.40 -10.78 11.77 -60.30 -0.71 -11.49 16 9 O 0.07 1.80 11.29 74.85 0.85 2.65 16 10 C 0.16 3.96 7.31 88.38 0.65 4.60 16 11 C 0.20 4.59 3.29 44.17 0.15 4.73 16 12 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 13 N -0.82 -16.21 8.68 -171.80 -1.49 -17.70 16 14 C -0.10 -2.91 4.84 30.60 0.15 -2.77 16 15 C -0.08 -2.99 5.04 30.60 0.15 -2.83 16 16 C -0.02 -0.74 4.04 29.85 0.12 -0.62 16 17 C -0.53 -30.62 9.66 25.60 0.25 -30.37 16 18 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 19 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 20 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 21 Si 0.95 44.84 27.47 68.60 1.88 46.72 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 25 N -0.50 -13.46 11.55 -303.18 -3.50 -16.96 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.51 7.90 -2.39 -0.02 0.49 16 29 H 0.09 1.55 7.91 -2.39 -0.02 1.53 16 30 H 0.13 1.22 8.05 -2.38 -0.02 1.20 16 31 H 0.36 6.44 8.98 -89.69 -0.81 5.64 16 32 H 0.36 5.62 9.06 -89.70 -0.81 4.80 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.50 7.75 -2.39 -0.02 2.49 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.02 0.70 7.20 -2.39 -0.02 0.69 16 38 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 39 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -70.14 330.86 0.61 -69.54 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -0.61 Total: 14.22 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 3.89 Total: -26.60 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -5.40 Total: -106.53 kcal Atomic # 8 Polarization: 1.80 SS G_CDS: 0.85 Total: 2.65 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -70.14 0.61 -69.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848624254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.099 kcal (2) G-P(sol) polarization free energy of solvation -70.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds