Wall clock time and date at job start Mon Mar 30 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.09001 * 117.50014 * 215.02940 * 5 2 1 7 7 C 1.50706 * 117.49668 * 0.02562 * 5 2 1 8 8 N 1.29943 * 126.28851 * 60.02449 * 7 5 2 9 9 O 1.21292 * 110.25285 * 179.97438 * 8 7 5 10 10 C 1.33638 * 109.81336 * 0.02562 * 9 8 7 11 11 C 1.50707 * 126.55456 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47049 * 195.02843 * 11 10 9 13 13 N 1.46900 * 109.46718 * 315.02626 * 11 10 9 14 14 C 1.52994 * 109.46783 * 75.02600 * 11 10 9 15 15 C 1.53002 * 109.47078 * 175.00087 * 14 11 10 16 16 C 1.52995 * 109.47427 * 180.02562 * 15 14 11 17 17 C 1.50698 * 109.47335 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99992 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00103 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47402 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47191 * 119.99919 * 21 19 17 24 24 H 1.48496 * 109.47225 * 239.99478 * 21 19 17 25 25 N 1.31129 * 106.89695 * 359.76865 * 10 9 8 26 26 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 27 27 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 28 28 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 29 29 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.49959 * 144.99502 * 4 2 1 31 31 H 1.00899 * 111.00258 * 60.00396 * 13 11 10 32 32 H 1.00906 * 110.99451 * 183.95164 * 13 11 10 33 33 H 1.09001 * 109.47520 * 294.99805 * 14 11 10 34 34 H 1.08996 * 109.47136 * 55.00611 * 14 11 10 35 35 H 1.09001 * 109.47457 * 300.00184 * 15 14 11 36 36 H 1.09006 * 109.47028 * 59.99810 * 15 14 11 37 37 H 1.09008 * 109.47064 * 300.00103 * 16 15 14 38 38 H 1.09006 * 109.47288 * 59.99827 * 16 15 14 39 39 H 0.96997 * 119.99634 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 3.1711 -0.8746 1.2693 7 6 1.3719 -2.1405 1.4611 8 7 0.5024 -2.9246 0.8973 9 8 -0.0289 -3.6294 1.7293 10 6 0.4657 -3.3531 2.9396 11 6 0.0724 -4.0051 4.2402 12 1 0.4379 -3.4041 5.0729 13 7 -1.3912 -4.1060 4.3143 14 6 0.6847 -5.4052 4.3143 15 6 0.3902 -6.0187 5.6847 16 6 1.0029 -7.4186 5.7591 17 6 0.7124 -8.0231 7.1086 18 1 0.1475 -7.4644 7.8402 19 6 1.1685 -9.2889 7.4097 20 7 1.8568 -9.9690 6.5190 21 14 0.8090 -10.0378 9.0828 22 1 0.0238 -9.0760 9.8973 23 1 0.0302 -11.2901 8.9075 24 1 2.0875 -10.3428 9.7737 25 7 1.3619 -2.4095 2.7788 26 1 -0.3633 0.0792 1.0246 27 1 -0.3634 0.8478 -0.5809 28 1 -0.3634 -0.9269 -0.4438 29 1 1.6112 -1.8584 -1.2685 30 1 3.1713 -0.8746 -1.2689 31 1 -1.7546 -4.6588 3.5524 32 1 -1.6831 -4.4809 5.2045 33 1 0.2522 -6.0326 3.5349 34 1 1.7630 -5.3383 4.1704 35 1 0.8226 -5.3913 6.4642 36 1 -0.6882 -6.0855 5.8287 37 1 0.5709 -8.0463 4.9796 38 1 2.0814 -7.3514 5.6153 39 1 2.1774 -10.8597 6.7307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848624255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:47 Heat of formation + Delta-G solvation = 68.809281 kcal Electronic energy + Delta-G solvation = -19444.426279 eV Core-core repulsion = 16390.310623 eV Total energy + Delta-G solvation = -3054.115656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.55315 -38.49054 -37.27259 -35.33205 -33.66644 -31.89524 -31.19531 -28.95183 -27.98203 -25.61322 -25.11653 -23.48646 -22.27483 -21.21698 -20.30544 -19.68378 -18.02143 -17.46821 -16.53944 -16.31832 -15.81745 -15.07723 -14.67828 -14.54497 -14.07604 -13.69779 -13.56197 -13.18234 -12.74070 -12.47383 -12.33020 -12.15095 -11.90845 -11.79255 -11.74009 -11.31049 -11.02846 -10.87630 -10.72727 -10.68038 -10.55892 -10.43892 -9.83791 -9.72823 -9.49480 -9.18892 -8.78316 -8.40640 -6.05229 -4.08337 1.15731 2.13029 2.82888 3.27854 3.33479 3.35760 3.39251 3.48499 3.97572 4.34931 4.40045 4.41882 4.59246 4.67430 4.97222 5.03821 5.11133 5.24322 5.31008 5.39217 5.45186 5.51460 5.61255 5.68535 5.75382 5.76251 5.87187 5.96864 6.04042 6.16457 6.50279 6.66171 6.89859 6.96661 7.31402 7.59945 7.71703 7.93629 8.19327 8.34894 8.99029 9.56486 11.06039 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.047769 B = 0.003039 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.008746 B = 9212.511628 C = 9466.273536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 H 0.116 0.884 4 C -0.156 4.156 5 C -0.076 4.076 6 H 0.134 0.866 7 C 0.202 3.798 8 N -0.387 5.387 9 O 0.078 5.922 10 C 0.209 3.791 11 C 0.183 3.817 12 H 0.125 0.875 13 N -0.840 5.840 14 C -0.152 4.152 15 C -0.108 4.108 16 C 0.021 3.979 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 N -0.481 5.481 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.347 0.653 32 H 0.363 0.637 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 17.792 -11.898 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.150 4.150 3 H 0.134 0.866 4 C -0.194 4.194 5 C -0.096 4.096 6 H 0.152 0.848 7 C -0.070 4.070 8 N -0.095 5.095 9 O 0.021 5.979 10 C -0.012 4.012 11 C 0.070 3.930 12 H 0.142 0.858 13 N -0.373 5.373 14 C -0.193 4.193 15 C -0.146 4.146 16 C -0.016 4.016 17 C -0.560 4.560 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 N -0.215 5.215 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.140 18.703 -12.718 22.719 hybrid contribution 0.131 -1.718 1.154 2.074 sum -2.009 16.985 -11.564 20.646 Atomic orbital electron populations 1.21417 0.92412 1.02601 1.02052 1.22493 0.95994 0.94236 1.02267 0.86560 1.23265 1.03141 1.01345 0.91652 1.20194 0.99127 0.96600 0.93670 0.84796 1.24644 0.96902 0.98272 0.87160 1.74537 1.12563 1.07592 1.14846 1.85260 1.50538 1.47476 1.14637 1.28868 0.89818 0.92093 0.90413 1.20110 0.89903 0.96074 0.86956 0.85759 1.58922 1.07136 1.61198 1.10050 1.22553 1.02083 0.93266 1.01354 1.21655 1.00352 0.99869 0.92689 1.19086 0.96062 0.89317 0.97103 1.21269 1.34540 1.00436 0.99793 0.92549 1.25039 0.95138 0.97273 0.97055 1.69976 1.37024 1.12113 1.34289 0.86537 0.78064 0.79183 0.84227 1.19691 1.20997 1.21001 1.71811 1.19801 1.14536 1.15316 0.92458 0.91664 0.91766 0.87769 0.87544 0.83959 0.81979 0.91326 0.91037 0.92681 0.93094 0.96599 0.96526 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.13 37.16 0.34 -0.86 16 2 C -0.13 -1.13 6.40 -90.62 -0.58 -1.71 16 3 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.16 -1.36 9.79 -26.70 -0.26 -1.62 16 5 C -0.08 -0.82 6.33 -91.73 -0.58 -1.40 16 6 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 7 C 0.20 2.85 6.88 -156.37 -1.08 1.78 16 8 N -0.39 -5.67 10.92 30.89 0.34 -5.33 16 9 O 0.08 1.15 11.29 18.12 0.20 1.35 16 10 C 0.21 3.03 7.32 -13.06 -0.10 2.93 16 11 C 0.18 2.41 3.35 -68.86 -0.23 2.18 16 12 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 13 N -0.84 -9.74 9.17 -5.65 -0.05 -9.79 16 14 C -0.15 -2.33 4.84 -26.73 -0.13 -2.46 16 15 C -0.11 -1.97 4.92 -26.73 -0.13 -2.10 16 16 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 17 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 N -0.48 -7.35 11.55 -9.87 -0.11 -7.47 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.69 7.21 -51.93 -0.37 0.31 16 29 H 0.10 1.03 7.82 -51.92 -0.41 0.62 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.35 3.78 8.98 -39.29 -0.35 3.43 16 32 H 0.36 3.92 7.55 -39.29 -0.30 3.63 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.86 6.87 -51.93 -0.36 0.50 16 37 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -30.88 329.63 -8.22 -39.09 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.98 Total: 2.79 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -3.30 Total: -16.02 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.91 Total: -48.43 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.20 Total: 1.35 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.88 -8.22 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848624255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.900 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds