Wall clock time and date at job start Mon Mar 30 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.09001 * 117.50014 * 215.02940 * 5 2 1 7 7 C 1.50706 * 117.49668 * 0.02562 * 5 2 1 8 8 N 1.29943 * 126.28851 * 60.02449 * 7 5 2 9 9 O 1.21292 * 110.25285 * 179.97438 * 8 7 5 10 10 C 1.33638 * 109.81336 * 0.02562 * 9 8 7 11 11 C 1.50707 * 126.55456 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47049 * 195.02843 * 11 10 9 13 13 N 1.46900 * 109.46718 * 315.02626 * 11 10 9 14 14 C 1.52994 * 109.46783 * 75.02600 * 11 10 9 15 15 C 1.53002 * 109.47078 * 175.00087 * 14 11 10 16 16 C 1.52995 * 109.47427 * 180.02562 * 15 14 11 17 17 C 1.50698 * 109.47335 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99992 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00103 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47402 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47191 * 119.99919 * 21 19 17 24 24 H 1.48496 * 109.47225 * 239.99478 * 21 19 17 25 25 N 1.31129 * 106.89695 * 359.76865 * 10 9 8 26 26 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 27 27 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 28 28 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 29 29 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.49959 * 144.99502 * 4 2 1 31 31 H 1.00899 * 111.00258 * 60.00396 * 13 11 10 32 32 H 1.00906 * 110.99451 * 183.95164 * 13 11 10 33 33 H 1.09001 * 109.47520 * 294.99805 * 14 11 10 34 34 H 1.08996 * 109.47136 * 55.00611 * 14 11 10 35 35 H 1.09001 * 109.47457 * 300.00184 * 15 14 11 36 36 H 1.09006 * 109.47028 * 59.99810 * 15 14 11 37 37 H 1.09008 * 109.47064 * 300.00103 * 16 15 14 38 38 H 1.09006 * 109.47288 * 59.99827 * 16 15 14 39 39 H 0.96997 * 119.99634 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 3.1711 -0.8746 1.2693 7 6 1.3719 -2.1405 1.4611 8 7 0.5024 -2.9246 0.8973 9 8 -0.0289 -3.6294 1.7293 10 6 0.4657 -3.3531 2.9396 11 6 0.0724 -4.0051 4.2402 12 1 0.4379 -3.4041 5.0729 13 7 -1.3912 -4.1060 4.3143 14 6 0.6847 -5.4052 4.3143 15 6 0.3902 -6.0187 5.6847 16 6 1.0029 -7.4186 5.7591 17 6 0.7124 -8.0231 7.1086 18 1 0.1475 -7.4644 7.8402 19 6 1.1685 -9.2889 7.4097 20 7 1.8568 -9.9690 6.5190 21 14 0.8090 -10.0378 9.0828 22 1 0.0238 -9.0760 9.8973 23 1 0.0302 -11.2901 8.9075 24 1 2.0875 -10.3428 9.7737 25 7 1.3619 -2.4095 2.7788 26 1 -0.3633 0.0792 1.0246 27 1 -0.3634 0.8478 -0.5809 28 1 -0.3634 -0.9269 -0.4438 29 1 1.6112 -1.8584 -1.2685 30 1 3.1713 -0.8746 -1.2689 31 1 -1.7546 -4.6588 3.5524 32 1 -1.6831 -4.4809 5.2045 33 1 0.2522 -6.0326 3.5349 34 1 1.7630 -5.3383 4.1704 35 1 0.8226 -5.3913 6.4642 36 1 -0.6882 -6.0855 5.8287 37 1 0.5709 -8.0463 4.9796 38 1 2.0814 -7.3514 5.6153 39 1 2.1774 -10.8597 6.7307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848624255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:47 Heat of formation + Delta-G solvation = 47.679766 kcal Electronic energy + Delta-G solvation = -19445.342523 eV Core-core repulsion = 16390.310623 eV Total energy + Delta-G solvation = -3055.031900 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.65899 -39.26769 -38.49264 -36.44492 -35.50392 -33.45099 -32.48620 -29.70171 -29.51171 -27.09819 -26.13141 -24.91998 -23.55838 -22.08529 -21.81240 -20.65403 -19.15699 -18.52831 -18.41247 -17.56930 -16.63511 -16.51106 -16.24429 -15.71410 -15.32960 -14.88119 -14.45330 -14.33153 -14.14724 -13.78775 -13.57276 -13.35652 -13.17700 -12.98722 -12.86750 -12.59068 -12.47281 -12.40855 -12.31730 -12.07725 -11.66863 -11.49801 -11.37312 -11.21514 -11.12703 -10.63239 -10.55859 -9.87193 -8.19876 -6.30802 0.04191 1.07051 1.41012 1.41837 1.54609 1.72146 2.37047 2.42062 2.69295 2.99899 3.14174 3.52041 3.62152 3.63727 3.83170 3.87084 4.02853 4.16464 4.32672 4.41206 4.51326 4.62394 4.69874 4.71858 4.73580 4.80734 4.94513 4.97293 5.03244 5.04955 5.16858 5.24242 5.29205 5.53356 5.73586 5.85978 5.92779 6.24091 6.41056 6.87908 7.08526 7.39200 8.92160 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.047769 B = 0.003039 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.008746 B = 9212.511628 C = 9466.273536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.118 4.118 3 H 0.145 0.855 4 C -0.145 4.145 5 C -0.103 4.103 6 H 0.146 0.854 7 C 0.200 3.800 8 N -0.399 5.399 9 O 0.069 5.931 10 C 0.207 3.793 11 C 0.198 3.802 12 H 0.133 0.867 13 N -0.834 5.834 14 C -0.141 4.141 15 C -0.093 4.093 16 C 0.022 3.978 17 C -0.539 4.539 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.282 1.282 25 N -0.500 5.500 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.353 0.647 32 H 0.370 0.630 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.069 0.931 37 H -0.009 1.009 38 H -0.014 1.014 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 19.378 -11.508 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.138 4.138 3 H 0.163 0.837 4 C -0.183 4.183 5 C -0.122 4.122 6 H 0.163 0.837 7 C -0.072 4.072 8 N -0.110 5.110 9 O 0.014 5.986 10 C -0.014 4.014 11 C 0.084 3.916 12 H 0.151 0.849 13 N -0.369 5.369 14 C -0.181 4.181 15 C -0.131 4.131 16 C -0.016 4.016 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.577 5.577 21 Si 0.789 3.211 22 H -0.182 1.182 23 H -0.206 1.206 24 H -0.208 1.208 25 N -0.234 5.234 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.188 0.812 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.009 0.991 38 H 0.004 0.996 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.648 20.292 -12.319 23.886 hybrid contribution 0.287 -2.195 0.974 2.419 sum -2.361 18.097 -11.346 21.490 Atomic orbital electron populations 1.21416 0.93241 1.02649 1.01182 1.22655 0.95387 0.95068 1.00651 0.83717 1.23337 1.04041 1.00766 0.90143 1.20499 0.99598 0.97287 0.94862 0.83670 1.25286 0.96677 0.98319 0.86926 1.74532 1.13299 1.08166 1.15015 1.85236 1.50836 1.47738 1.14749 1.29051 0.89671 0.92074 0.90636 1.19926 0.90587 0.94417 0.86711 0.84930 1.58914 1.05849 1.61413 1.10713 1.22368 1.01498 0.94713 0.99549 1.21423 1.00952 0.96154 0.94583 1.19018 0.94421 0.92700 0.95415 1.21769 1.34160 1.00809 1.00944 0.91564 1.26007 0.94956 0.98027 1.01147 1.70114 1.38366 1.12595 1.36621 0.85411 0.77996 0.78398 0.79326 1.18157 1.20582 1.20752 1.71817 1.20233 1.15156 1.16181 0.94104 0.89461 0.93517 0.89260 0.84834 0.83353 0.81184 0.91502 0.92316 0.91977 0.91212 0.99096 0.99552 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.13 71.98 0.66 -1.60 16 2 C -0.12 -1.80 6.40 -10.79 -0.07 -1.87 16 3 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.15 -2.26 9.79 30.62 0.30 -1.96 16 5 C -0.10 -2.07 6.33 -11.51 -0.07 -2.14 16 6 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 7 C 0.20 5.57 6.88 138.46 0.95 6.53 16 8 N -0.40 -11.75 10.92 -60.36 -0.66 -12.41 16 9 O 0.07 2.03 11.29 74.89 0.85 2.88 16 10 C 0.21 5.92 7.32 88.38 0.65 6.57 16 11 C 0.20 4.99 3.35 44.17 0.15 5.14 16 12 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 13 N -0.83 -18.07 9.17 -171.80 -1.58 -19.65 16 14 C -0.14 -4.28 4.84 30.59 0.15 -4.13 16 15 C -0.09 -3.35 4.92 30.59 0.15 -3.20 16 16 C 0.02 1.09 4.97 29.85 0.15 1.24 16 17 C -0.54 -29.57 9.11 25.60 0.23 -29.33 16 18 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 20 N -0.94 -56.72 13.29 21.45 0.28 -56.44 16 21 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 N -0.50 -15.11 11.55 -303.23 -3.50 -18.61 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.05 0.98 7.21 -2.39 -0.02 0.96 16 29 H 0.09 1.68 7.82 -2.38 -0.02 1.66 16 30 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.35 7.22 8.98 -89.69 -0.81 6.41 16 32 H 0.37 7.22 7.55 -89.69 -0.68 6.54 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 2.24 6.87 -2.38 -0.02 2.22 16 37 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 38 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 39 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -67.23 329.63 0.70 -66.53 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.42 Total: 16.72 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.70 Total: -24.52 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -5.45 Total: -107.11 kcal Atomic # 8 Polarization: 2.03 SS G_CDS: 0.85 Total: 2.88 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -67.23 0.70 -66.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848624255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.208 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds