Wall clock time and date at job start Mon Mar 30 2020 07:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48500 * 109.47278 * 270.00156 * 3 2 1 5 5 H 1.48500 * 109.47284 * 30.00383 * 3 2 1 6 6 H 1.48500 * 109.46883 * 150.00068 * 3 2 1 7 7 C 1.37881 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99771 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00086 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46659 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47052 * 180.02562 * 11 10 9 13 13 C 1.46896 * 111.00165 * 180.02562 * 12 11 10 14 14 H 1.09001 * 110.07461 * 33.44996 * 13 12 11 15 15 C 1.53568 * 110.14747 * 271.86314 * 13 12 11 16 16 C 1.53466 * 107.22536 * 223.20609 * 15 13 12 17 17 C 1.53766 * 107.39748 * 0.87786 * 16 15 13 18 18 H 1.09004 * 115.37469 * 245.82005 * 17 16 15 19 19 C 1.53761 * 112.80880 * 109.62837 * 17 16 15 20 20 H 1.09004 * 115.85418 * 37.77255 * 19 17 16 21 21 O 1.44233 * 113.42730 * 173.81423 * 19 17 16 22 22 C 1.44427 * 105.32110 * 134.19372 * 21 19 17 23 23 C 1.54463 * 104.89438 * 319.24570 * 22 21 19 24 24 C 1.54837 * 103.99949 * 23.91881 * 23 22 21 25 25 H 1.09001 * 115.73818 * 129.98404 * 24 23 22 26 26 C 1.53446 * 112.87257 * 267.62571 * 24 23 22 27 27 H 1.08997 * 115.91363 * 10.93285 * 26 24 23 28 28 H 0.97000 * 119.99476 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46696 * 60.00179 * 9 7 2 30 30 H 1.09001 * 109.47065 * 300.00724 * 9 7 2 31 31 H 1.08998 * 109.47228 * 60.00575 * 10 9 7 32 32 H 1.08991 * 109.47372 * 300.00066 * 10 9 7 33 33 H 1.09001 * 109.47191 * 60.00477 * 11 10 9 34 34 H 1.08991 * 109.47421 * 300.00205 * 11 10 9 35 35 H 1.00903 * 110.99704 * 303.95945 * 12 11 10 36 36 H 1.09004 * 109.89257 * 342.60918 * 15 13 12 37 37 H 1.09008 * 109.89327 * 103.64183 * 15 13 12 38 38 H 1.09002 * 109.86227 * 241.41701 * 16 15 13 39 39 H 1.09003 * 109.86171 * 120.33297 * 16 15 13 40 40 H 1.09002 * 110.37532 * 78.13306 * 22 21 19 41 41 H 1.08999 * 110.37386 * 200.36174 * 22 21 19 42 42 H 1.08998 * 110.49611 * 142.61008 * 23 22 21 43 43 H 1.08997 * 110.49693 * 265.28577 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 7 6.0411 -4.0217 -0.0027 13 6 7.5095 -4.0610 -0.0033 14 1 7.9066 -3.2172 0.5610 15 6 8.0390 -4.0280 -1.4445 16 6 9.1713 -5.0597 -1.5364 17 6 9.3018 -5.7234 -0.1555 18 1 10.2354 -5.5260 0.3714 19 6 8.8270 -7.1859 -0.1499 20 1 9.0640 -7.7660 -1.0418 21 8 9.0738 -7.8641 1.0989 22 6 7.8459 -8.5606 1.4040 23 6 6.7229 -7.5699 1.0255 24 6 7.3823 -6.6382 -0.0207 25 1 6.8224 -6.4927 -0.9446 26 6 8.0024 -5.3823 0.6060 27 1 8.0753 -5.3789 1.6935 28 1 -0.4849 0.8401 -0.0004 29 1 3.8751 -0.6806 0.8889 30 1 3.8745 -0.6801 -0.8911 31 1 3.6577 -3.1507 -0.8908 32 1 3.6584 -3.1503 0.8892 33 1 5.9155 -2.1226 0.8873 34 1 5.9141 -2.1232 -0.8926 35 1 5.6661 -4.5381 0.7789 36 1 7.2408 -4.2905 -2.1389 37 1 8.4203 -3.0335 -1.6768 38 1 10.1053 -4.5622 -1.7979 39 1 8.9274 -5.8114 -2.2870 40 1 7.7669 -9.4696 0.8077 41 1 7.7990 -8.7994 2.4665 42 1 5.8775 -8.1005 0.5875 43 1 6.4061 -7.0002 1.8991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902789306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:19 Heat of formation + Delta-G solvation = -34.998198 kcal Electronic energy + Delta-G solvation = -20393.877763 eV Core-core repulsion = 17438.801021 eV Total energy + Delta-G solvation = -2955.076742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66766 -37.79398 -35.61601 -33.31733 -32.17811 -31.47934 -30.32002 -28.06299 -25.60674 -25.41510 -22.98440 -22.19553 -21.81023 -20.15209 -19.81324 -18.74889 -16.79901 -16.50269 -16.30269 -15.53959 -15.44969 -15.10030 -14.70786 -14.22202 -13.98919 -13.62398 -13.30527 -12.90983 -12.66928 -12.34736 -12.14948 -11.85294 -11.66847 -11.46342 -11.32801 -11.25670 -11.02757 -10.85184 -10.83260 -10.75182 -10.29383 -10.14243 -9.93754 -9.75238 -9.70374 -9.48347 -9.14983 -8.51953 -8.21234 -6.02422 -3.99991 3.31669 3.38806 3.42650 3.45917 3.98850 4.17828 4.27062 4.46786 4.56543 4.65426 4.71093 4.89384 4.99325 5.08400 5.17410 5.25277 5.31573 5.36209 5.43104 5.47912 5.50471 5.57940 5.66277 5.70264 5.74795 5.79743 5.83113 5.91125 6.05947 6.10538 6.19634 6.22775 6.27155 6.57987 6.62112 6.67996 6.94329 7.27758 7.37636 7.46617 7.62164 7.82532 8.57021 9.03209 9.60382 11.11201 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034020 B = 0.003523 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.855495 B = 7945.499737 C = 8494.241692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.056 3.944 12 N -0.680 5.680 13 C 0.091 3.909 14 H 0.046 0.954 15 C -0.114 4.114 16 C -0.101 4.101 17 C -0.105 4.105 18 H 0.090 0.910 19 C 0.050 3.950 20 H 0.087 0.913 21 O -0.364 6.364 22 C 0.046 3.954 23 C -0.149 4.149 24 C -0.112 4.112 25 H 0.119 0.881 26 C -0.102 4.102 27 H 0.096 0.904 28 H 0.262 0.738 29 H 0.013 0.987 30 H 0.011 0.989 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.339 0.661 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.942 -14.783 -0.093 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.072 4.072 12 N -0.311 5.311 13 C -0.019 4.019 14 H 0.064 0.936 15 C -0.152 4.152 16 C -0.139 4.139 17 C -0.124 4.124 18 H 0.108 0.892 19 C -0.007 4.007 20 H 0.105 0.895 21 O -0.283 6.283 22 C -0.030 4.030 23 C -0.187 4.187 24 C -0.131 4.131 25 H 0.137 0.863 26 C -0.121 4.121 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.924 -14.718 -0.641 24.779 hybrid contribution 0.312 1.218 0.889 1.540 sum 20.236 -13.500 0.248 24.327 Atomic orbital electron populations 1.69923 1.06296 1.26815 1.51390 1.25048 0.94737 0.99179 0.94657 0.86763 0.80305 0.83628 0.78479 1.20300 1.21435 1.19113 1.21158 0.89557 0.94432 1.50487 0.91054 1.19540 0.97122 0.92374 0.96054 1.21432 0.91218 0.99557 1.01458 1.22198 0.97489 0.87862 0.99694 1.60640 1.05993 1.14782 1.49659 1.21934 0.88670 0.95724 0.95617 0.93647 1.22003 0.97564 0.98466 0.97182 1.21714 0.99051 0.98029 0.95139 1.23004 0.98479 0.93737 0.97148 0.89214 1.24234 0.96566 0.92285 0.87641 0.89521 1.89006 1.34366 1.66384 1.38551 1.23484 0.83375 0.94963 1.01188 1.22981 0.98552 0.97583 0.99552 1.23853 0.94748 0.94805 0.99659 0.86268 1.23263 0.95791 0.93758 0.99292 0.88592 0.92792 0.96919 0.97096 0.92024 0.93129 0.95945 0.91588 0.84350 0.90177 0.92078 0.91534 0.91381 0.92430 0.89255 0.90393 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.43 16 10 C -0.10 -1.96 5.41 -26.73 -0.14 -2.10 16 11 C 0.06 0.91 5.52 -3.82 -0.02 0.89 16 12 N -0.68 -9.15 5.88 -106.07 -0.62 -9.77 16 13 C 0.09 1.05 2.98 -67.10 -0.20 0.85 16 14 H 0.05 0.56 7.81 -51.93 -0.41 0.16 16 15 C -0.11 -1.21 6.15 -26.19 -0.16 -1.37 16 16 C -0.10 -0.89 6.13 -26.09 -0.16 -1.05 16 17 C -0.10 -1.00 4.86 -89.08 -0.43 -1.43 16 18 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 19 C 0.05 0.49 4.82 -25.25 -0.12 0.36 16 20 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 21 O -0.36 -4.03 11.19 -35.23 -0.39 -4.42 16 22 C 0.05 0.40 7.62 37.93 0.29 0.69 16 23 C -0.15 -1.30 6.69 -25.00 -0.17 -1.46 16 24 C -0.11 -1.07 3.72 -88.34 -0.33 -1.40 16 25 H 0.12 1.23 7.94 -51.93 -0.41 0.81 16 26 C -0.10 -1.05 3.48 -89.32 -0.31 -1.36 16 27 H 0.10 1.04 8.02 -51.93 -0.42 0.62 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 30 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.34 4.41 8.33 -39.29 -0.33 4.08 16 36 H 0.08 0.94 7.97 -51.93 -0.41 0.52 16 37 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.55 7.77 -51.93 -0.40 0.15 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -30.75 332.10 -10.00 -40.75 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.79 Total: -0.03 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.30 Total: -21.37 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.15 Total: -37.28 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.39 Total: -4.42 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.75 -10.00 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902789306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.748 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds