Wall clock time and date at job start Mon Mar 30 2020 07:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48500 * 109.47278 * 270.00156 * 3 2 1 5 5 H 1.48500 * 109.47284 * 30.00383 * 3 2 1 6 6 H 1.48500 * 109.46883 * 150.00068 * 3 2 1 7 7 C 1.37881 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99771 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00086 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46659 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47052 * 180.02562 * 11 10 9 13 13 C 1.46896 * 111.00165 * 180.02562 * 12 11 10 14 14 H 1.09001 * 110.07461 * 33.44996 * 13 12 11 15 15 C 1.53568 * 110.14747 * 271.86314 * 13 12 11 16 16 C 1.53466 * 107.22536 * 223.20609 * 15 13 12 17 17 C 1.53766 * 107.39748 * 0.87786 * 16 15 13 18 18 H 1.09004 * 115.37469 * 245.82005 * 17 16 15 19 19 C 1.53761 * 112.80880 * 109.62837 * 17 16 15 20 20 H 1.09004 * 115.85418 * 37.77255 * 19 17 16 21 21 O 1.44233 * 113.42730 * 173.81423 * 19 17 16 22 22 C 1.44427 * 105.32110 * 134.19372 * 21 19 17 23 23 C 1.54463 * 104.89438 * 319.24570 * 22 21 19 24 24 C 1.54837 * 103.99949 * 23.91881 * 23 22 21 25 25 H 1.09001 * 115.73818 * 129.98404 * 24 23 22 26 26 C 1.53446 * 112.87257 * 267.62571 * 24 23 22 27 27 H 1.08997 * 115.91363 * 10.93285 * 26 24 23 28 28 H 0.97000 * 119.99476 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46696 * 60.00179 * 9 7 2 30 30 H 1.09001 * 109.47065 * 300.00724 * 9 7 2 31 31 H 1.08998 * 109.47228 * 60.00575 * 10 9 7 32 32 H 1.08991 * 109.47372 * 300.00066 * 10 9 7 33 33 H 1.09001 * 109.47191 * 60.00477 * 11 10 9 34 34 H 1.08991 * 109.47421 * 300.00205 * 11 10 9 35 35 H 1.00903 * 110.99704 * 303.95945 * 12 11 10 36 36 H 1.09004 * 109.89257 * 342.60918 * 15 13 12 37 37 H 1.09008 * 109.89327 * 103.64183 * 15 13 12 38 38 H 1.09002 * 109.86227 * 241.41701 * 16 15 13 39 39 H 1.09003 * 109.86171 * 120.33297 * 16 15 13 40 40 H 1.09002 * 110.37532 * 78.13306 * 22 21 19 41 41 H 1.08999 * 110.37386 * 200.36174 * 22 21 19 42 42 H 1.08998 * 110.49611 * 142.61008 * 23 22 21 43 43 H 1.08997 * 110.49693 * 265.28577 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 7 6.0411 -4.0217 -0.0027 13 6 7.5095 -4.0610 -0.0033 14 1 7.9066 -3.2172 0.5610 15 6 8.0390 -4.0280 -1.4445 16 6 9.1713 -5.0597 -1.5364 17 6 9.3018 -5.7234 -0.1555 18 1 10.2354 -5.5260 0.3714 19 6 8.8270 -7.1859 -0.1499 20 1 9.0640 -7.7660 -1.0418 21 8 9.0738 -7.8641 1.0989 22 6 7.8459 -8.5606 1.4040 23 6 6.7229 -7.5699 1.0255 24 6 7.3823 -6.6382 -0.0207 25 1 6.8224 -6.4927 -0.9446 26 6 8.0024 -5.3823 0.6060 27 1 8.0753 -5.3789 1.6935 28 1 -0.4849 0.8401 -0.0004 29 1 3.8751 -0.6806 0.8889 30 1 3.8745 -0.6801 -0.8911 31 1 3.6577 -3.1507 -0.8908 32 1 3.6584 -3.1503 0.8892 33 1 5.9155 -2.1226 0.8873 34 1 5.9141 -2.1232 -0.8926 35 1 5.6661 -4.5381 0.7789 36 1 7.2408 -4.2905 -2.1389 37 1 8.4203 -3.0335 -1.6768 38 1 10.1053 -4.5622 -1.7979 39 1 8.9274 -5.8114 -2.2870 40 1 7.7669 -9.4696 0.8077 41 1 7.7990 -8.7994 2.4665 42 1 5.8775 -8.1005 0.5875 43 1 6.4061 -7.0002 1.8991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902789306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:18 Heat of formation + Delta-G solvation = -54.179744 kcal Electronic energy + Delta-G solvation = -20394.709537 eV Core-core repulsion = 17438.801021 eV Total energy + Delta-G solvation = -2955.908517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.44023 -38.68851 -36.91861 -35.14029 -33.32738 -32.85185 -31.19128 -29.40829 -27.08303 -26.17408 -23.85428 -23.74518 -22.55855 -21.81105 -20.74294 -19.55543 -18.89855 -17.37203 -17.16002 -16.52939 -16.41765 -16.24761 -16.00770 -15.61202 -15.21636 -14.79782 -14.58706 -14.18877 -13.86633 -13.78231 -13.29489 -12.97318 -12.82567 -12.71324 -12.55050 -12.32211 -12.13342 -11.99474 -11.82947 -11.78473 -11.58099 -11.52608 -11.38104 -11.24946 -11.04615 -10.86379 -10.76553 -10.44145 -9.31699 -8.29664 -6.33838 1.35615 1.37462 1.49608 2.36138 2.75159 3.05578 3.09157 3.33326 3.50043 3.72389 3.84496 3.98725 4.19942 4.21241 4.29359 4.31479 4.37488 4.40265 4.50863 4.59283 4.65691 4.66346 4.71681 4.80090 4.83739 4.89147 4.96707 4.98422 5.02229 5.09974 5.15492 5.18437 5.25511 5.32899 5.40584 5.48372 5.53704 5.61911 5.66617 5.96455 6.17729 6.30264 6.51986 6.74553 7.30780 8.87377 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034020 B = 0.003523 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.855495 B = 7945.499737 C = 8494.241692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.533 4.533 8 H 0.030 0.970 9 C -0.010 4.010 10 C -0.089 4.089 11 C 0.071 3.929 12 N -0.679 5.679 13 C 0.091 3.909 14 H 0.040 0.960 15 C -0.112 4.112 16 C -0.095 4.095 17 C -0.101 4.101 18 H 0.089 0.911 19 C 0.051 3.949 20 H 0.099 0.901 21 O -0.385 6.385 22 C 0.044 3.956 23 C -0.148 4.148 24 C -0.110 4.110 25 H 0.114 0.886 26 C -0.103 4.103 27 H 0.089 0.911 28 H 0.266 0.734 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.341 0.659 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.266 -14.551 -0.331 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.127 4.127 11 C -0.059 4.059 12 N -0.310 5.310 13 C -0.019 4.019 14 H 0.058 0.942 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.120 4.120 18 H 0.107 0.893 19 C -0.006 4.006 20 H 0.116 0.884 21 O -0.305 6.305 22 C -0.032 4.032 23 C -0.186 4.186 24 C -0.128 4.128 25 H 0.132 0.868 26 C -0.121 4.121 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.159 0.841 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 22.266 -14.511 -0.880 26.592 hybrid contribution -0.488 1.049 0.978 1.515 sum 21.778 -13.462 0.098 25.603 Atomic orbital electron populations 1.70080 1.08353 1.28173 1.52766 1.26073 0.95664 1.03682 0.94112 0.85602 0.79414 0.78015 0.79262 1.19045 1.20935 1.17042 1.21523 0.92281 0.93046 1.50285 0.95205 1.19490 0.93773 0.95188 0.96371 1.21249 0.94033 0.96743 1.00690 1.21919 0.94472 0.89511 0.99962 1.60596 1.07423 1.13081 1.49888 1.21989 0.87143 0.96283 0.96461 0.94193 1.21976 0.97843 0.99200 0.96028 1.21673 0.98901 0.97753 0.94912 1.23010 0.97888 0.93796 0.97315 0.89300 1.24295 0.96274 0.92390 0.87679 0.88380 1.88983 1.35540 1.66811 1.39161 1.23613 0.82394 0.95069 1.02090 1.22981 0.98885 0.97549 0.99195 1.23790 0.94983 0.94535 0.99530 0.86803 1.23223 0.96608 0.93341 0.98969 0.89239 0.92497 0.96407 0.96320 0.93160 0.93636 0.95638 0.91338 0.84088 0.91258 0.91907 0.90242 0.90462 0.91234 0.88338 0.89659 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 2 C 0.00 0.07 5.47 84.66 0.46 0.53 16 3 Si 0.95 44.81 27.47 68.60 1.88 46.70 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 7 C -0.53 -31.50 9.66 25.60 0.25 -31.25 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.09 -3.50 5.41 30.59 0.17 -3.34 16 11 C 0.07 2.18 5.52 86.30 0.48 2.65 16 12 N -0.68 -17.44 5.88 -489.51 -2.88 -20.32 16 13 C 0.09 1.97 2.98 45.32 0.14 2.10 16 14 H 0.04 0.93 7.81 -2.39 -0.02 0.91 16 15 C -0.11 -2.18 6.15 30.94 0.19 -1.99 16 16 C -0.09 -1.45 6.13 31.01 0.19 -1.26 16 17 C -0.10 -1.73 4.86 -9.80 -0.05 -1.78 16 18 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 19 C 0.05 0.89 4.82 31.55 0.15 1.04 16 20 H 0.10 1.49 8.08 -2.38 -0.02 1.47 16 21 O -0.39 -7.92 11.19 -148.98 -1.67 -9.59 16 22 C 0.04 0.69 7.62 72.48 0.55 1.24 16 23 C -0.15 -2.39 6.69 31.72 0.21 -2.18 16 24 C -0.11 -1.94 3.72 -9.31 -0.03 -1.98 16 25 H 0.11 2.17 7.94 -2.39 -0.02 2.15 16 26 C -0.10 -1.97 3.48 -9.95 -0.03 -2.01 16 27 H 0.09 1.85 8.02 -2.39 -0.02 1.83 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.02 0.82 7.20 -2.39 -0.02 0.81 16 30 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.03 0.78 8.07 -2.39 -0.02 0.76 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.34 8.54 8.33 -89.69 -0.75 7.79 16 36 H 0.07 1.51 7.97 -2.38 -0.02 1.49 16 37 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.06 7.77 -2.39 -0.02 1.04 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.22 7.94 -2.39 -0.02 1.21 16 Total: -1.00 -66.24 332.10 0.59 -65.66 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.16 Total: 16.62 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 2.79 Total: -38.58 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -2.58 Total: -80.81 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -1.67 Total: -9.59 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -66.24 0.59 -65.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902789306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.476 kcal (2) G-P(sol) polarization free energy of solvation -66.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds