Wall clock time and date at job start Mon Mar 30 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 C 1.50697 * 109.47231 * 120.00055 * 2 1 3 5 5 H 1.08003 * 120.00582 * 120.00024 * 4 2 1 6 6 C 1.37885 * 119.99874 * 299.99594 * 4 2 1 7 7 N 1.31512 * 120.00084 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99742 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46609 * 90.00781 * 8 6 4 10 10 H 1.48500 * 109.47010 * 209.99842 * 8 6 4 11 11 H 1.48493 * 109.47749 * 330.00479 * 8 6 4 12 12 N 1.46498 * 109.47214 * 239.99771 * 2 1 3 13 13 N 1.40109 * 119.99760 * 89.72111 * 12 2 1 14 14 C 1.30050 * 119.99672 * 180.27530 * 13 12 2 15 15 C 1.46646 * 119.99926 * 180.02562 * 14 13 12 16 16 N 1.31602 * 125.76712 * 180.02562 * 15 14 13 17 17 C 1.34123 * 108.61655 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.04901 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47192 * 254.97364 * 18 17 16 20 20 C 1.53001 * 109.46839 * 14.97219 * 18 17 16 21 21 C 1.53000 * 109.47141 * 134.97177 * 18 17 16 22 22 C 1.34557 * 107.90421 * 359.97438 * 17 16 15 23 23 O 1.34580 * 125.76492 * 359.69369 * 15 14 13 24 24 H 1.09003 * 109.47035 * 299.99925 * 1 2 3 25 25 H 1.09000 * 109.47195 * 59.99608 * 1 2 3 26 26 H 1.08999 * 109.47020 * 180.02562 * 1 2 3 27 27 H 0.96999 * 120.00094 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00384 * 270.00593 * 12 2 1 29 29 H 1.08002 * 120.00548 * 0.02562 * 14 13 12 30 30 H 1.09003 * 109.47238 * 59.99856 * 19 18 17 31 31 H 1.08997 * 109.47345 * 180.02562 * 19 18 17 32 32 H 1.09000 * 109.46975 * 300.00065 * 19 18 17 33 33 H 1.09005 * 109.46831 * 60.00116 * 20 18 17 34 34 H 1.08997 * 109.46703 * 179.97438 * 20 18 17 35 35 H 1.08997 * 109.47470 * 300.00215 * 20 18 17 36 36 H 1.09000 * 109.46980 * 59.99963 * 21 18 17 37 37 H 1.08997 * 109.47263 * 179.97438 * 21 18 17 38 38 H 1.09005 * 109.47387 * 300.00409 * 21 18 17 39 39 H 1.08004 * 126.33576 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8297 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6298 -0.5457 4.4123 10 1 1.3433 -0.9491 5.1120 11 1 2.4860 -2.5661 3.7120 12 7 2.0183 -0.6906 -1.1961 13 7 2.2463 0.0289 -2.3765 14 6 2.6747 -0.5851 -3.4398 15 6 2.9138 0.1681 -4.6752 16 7 3.3445 -0.3357 -5.8121 17 6 3.4399 0.6554 -6.7108 18 6 3.8939 0.5151 -8.1409 19 6 5.3142 1.0663 -8.2814 20 6 3.8786 -0.9623 -8.5382 21 6 2.9499 1.2989 -9.0549 22 6 3.0573 1.7969 -6.1098 23 8 2.7240 1.4903 -4.8395 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7083 1.1610 3.4844 28 1 2.1800 -1.6468 -1.1721 29 1 2.8544 -1.6497 -3.4132 30 1 5.9868 0.5080 -7.6302 31 1 5.6425 0.9653 -9.3158 32 1 5.3251 2.1189 -7.9983 33 1 2.8667 -1.3550 -8.4380 34 1 4.2066 -1.0637 -9.5727 35 1 4.5511 -1.5207 -7.8870 36 1 2.9608 2.3514 -8.7718 37 1 3.2786 1.1978 -10.0892 38 1 1.9380 0.9062 -8.9548 39 1 3.0200 2.7769 -6.5622 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905457056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:51 Heat of formation + Delta-G solvation = 48.368316 kcal Electronic energy + Delta-G solvation = -19261.124790 eV Core-core repulsion = 16206.122747 eV Total energy + Delta-G solvation = -3055.002042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.00067 -37.43921 -36.65272 -34.24826 -33.78453 -31.64088 -29.63307 -27.76951 -27.43579 -27.01137 -25.32165 -23.47446 -22.87968 -20.63955 -20.41217 -19.05953 -17.26455 -16.63372 -16.33335 -15.92894 -15.23812 -14.88593 -14.55548 -14.22872 -14.12868 -13.43725 -13.33790 -12.75525 -12.58416 -12.54031 -12.24322 -11.81873 -11.64078 -11.32598 -11.30127 -11.11029 -11.05752 -11.01693 -10.82375 -10.56522 -10.32458 -10.28899 -10.26987 -9.88543 -9.15389 -8.80061 -8.55448 -7.07736 -6.21026 -4.30111 1.30363 2.39735 2.93738 3.20978 3.26581 3.28801 3.40176 3.40691 4.21406 4.33700 4.59733 4.83335 4.88089 5.11911 5.13970 5.16907 5.39797 5.50817 5.58683 5.68275 5.71715 5.77601 5.80501 5.86908 5.99616 6.12261 6.14794 6.30086 6.42334 6.47184 6.76604 6.90655 7.03474 7.46112 7.65240 7.72938 7.93369 8.02664 8.15237 8.74996 9.02789 9.36873 10.85053 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.047708 B = 0.003033 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.763454 B = 9230.518718 C = 9396.877796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.293 3.707 3 H 0.046 0.954 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.601 5.601 13 N -0.162 5.162 14 C 0.012 3.988 15 C 0.279 3.721 16 N -0.478 5.478 17 C 0.003 3.997 18 C 0.013 3.987 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.141 4.141 22 C -0.088 4.088 23 O -0.187 6.187 24 H 0.093 0.907 25 H 0.014 0.986 26 H 0.028 0.972 27 H 0.266 0.734 28 H 0.375 0.625 29 H 0.141 0.859 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.536 0.289 -19.684 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.191 3.809 3 H 0.064 0.936 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.339 5.339 13 N 0.018 4.982 14 C -0.195 4.195 15 C 0.075 3.925 16 N -0.210 5.210 17 C -0.119 4.119 18 C 0.012 3.988 19 C -0.196 4.196 20 C -0.187 4.187 21 C -0.198 4.198 22 C -0.161 4.161 23 O -0.072 6.072 24 H 0.111 0.889 25 H 0.033 0.967 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.212 0.788 29 H 0.158 0.842 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.227 0.782 -19.034 19.513 hybrid contribution 0.353 -0.805 0.781 1.176 sum 4.580 -0.023 -18.254 18.819 Atomic orbital electron populations 1.22218 0.98564 0.99480 1.00845 1.18708 0.90471 0.93815 0.77859 0.93618 1.21197 1.32623 1.13504 0.89992 0.91960 1.24861 0.94702 0.94981 0.99016 1.69884 1.35729 1.22476 1.24111 0.86384 0.78624 0.79859 0.81887 1.20467 1.20967 1.19793 1.49268 1.70308 1.08278 1.06053 1.74096 1.01823 1.28236 0.94004 1.21757 1.13431 0.96154 0.88157 1.23230 0.97543 0.77848 0.93922 1.70644 1.19585 1.31791 0.98973 1.21511 1.04270 0.89032 0.97075 1.18904 0.95342 0.97369 0.87154 1.21893 0.94918 1.00910 1.01860 1.21704 1.02704 0.93989 1.00342 1.21925 0.99280 0.99680 0.98928 1.24685 1.07491 1.01326 0.82591 1.84703 1.65462 1.27257 1.29734 0.88881 0.96682 0.95258 0.92418 0.78826 0.84192 0.92249 0.91997 0.92528 0.92461 0.92864 0.91742 0.92477 0.91846 0.92261 0.77581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.29 37.16 0.35 -3.31 16 2 C 0.29 7.30 3.23 -69.08 -0.22 7.08 16 3 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 4 C -0.53 -13.99 8.74 -34.44 -0.30 -14.29 16 5 H 0.06 1.59 7.79 -52.48 -0.41 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.22 11.32 55.43 0.63 -23.60 16 8 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.60 -12.92 6.10 -5.88 -0.04 -12.96 16 13 N -0.16 -3.33 11.48 32.01 0.37 -2.96 16 14 C 0.01 0.21 11.05 -14.91 -0.16 0.05 16 15 C 0.28 4.81 8.11 -14.26 -0.12 4.70 16 16 N -0.48 -7.65 10.70 -8.21 -0.09 -7.73 16 17 C 0.00 0.04 5.52 -82.89 -0.46 -0.42 16 18 C 0.01 0.13 0.95 -155.66 -0.15 -0.02 16 19 C -0.14 -1.19 8.46 37.16 0.31 -0.87 16 20 C -0.13 -1.30 8.04 37.16 0.30 -1.00 16 21 C -0.14 -1.11 8.19 37.16 0.30 -0.80 16 22 C -0.09 -1.16 11.44 29.43 0.34 -0.82 16 23 O -0.19 -3.17 10.80 3.40 0.04 -3.14 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.37 7.28 8.58 -182.59 -1.57 5.72 16 29 H 0.14 2.14 8.03 -52.49 -0.42 1.72 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.06 0.39 7.49 -51.93 -0.39 0.00 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.21 1.85 7.65 -52.48 -0.40 1.45 16 LS Contribution 333.00 15.07 5.02 5.02 Total: -1.00 -28.75 333.00 -6.29 -35.04 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.28 Total: 2.96 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.87 Total: -47.25 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.75 -6.29 -35.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905457056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.406 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds