Wall clock time and date at job start Mon Mar 30 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 C 1.50697 * 109.47231 * 120.00055 * 2 1 3 5 5 H 1.08003 * 120.00582 * 120.00024 * 4 2 1 6 6 C 1.37885 * 119.99874 * 299.99594 * 4 2 1 7 7 N 1.31512 * 120.00084 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99742 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46609 * 90.00781 * 8 6 4 10 10 H 1.48500 * 109.47010 * 209.99842 * 8 6 4 11 11 H 1.48493 * 109.47749 * 330.00479 * 8 6 4 12 12 N 1.46498 * 109.47214 * 239.99771 * 2 1 3 13 13 N 1.40109 * 119.99760 * 89.72111 * 12 2 1 14 14 C 1.30050 * 119.99672 * 180.27530 * 13 12 2 15 15 C 1.46646 * 119.99926 * 180.02562 * 14 13 12 16 16 N 1.31602 * 125.76712 * 180.02562 * 15 14 13 17 17 C 1.34123 * 108.61655 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.04901 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47192 * 254.97364 * 18 17 16 20 20 C 1.53001 * 109.46839 * 14.97219 * 18 17 16 21 21 C 1.53000 * 109.47141 * 134.97177 * 18 17 16 22 22 C 1.34557 * 107.90421 * 359.97438 * 17 16 15 23 23 O 1.34580 * 125.76492 * 359.69369 * 15 14 13 24 24 H 1.09003 * 109.47035 * 299.99925 * 1 2 3 25 25 H 1.09000 * 109.47195 * 59.99608 * 1 2 3 26 26 H 1.08999 * 109.47020 * 180.02562 * 1 2 3 27 27 H 0.96999 * 120.00094 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00384 * 270.00593 * 12 2 1 29 29 H 1.08002 * 120.00548 * 0.02562 * 14 13 12 30 30 H 1.09003 * 109.47238 * 59.99856 * 19 18 17 31 31 H 1.08997 * 109.47345 * 180.02562 * 19 18 17 32 32 H 1.09000 * 109.46975 * 300.00065 * 19 18 17 33 33 H 1.09005 * 109.46831 * 60.00116 * 20 18 17 34 34 H 1.08997 * 109.46703 * 179.97438 * 20 18 17 35 35 H 1.08997 * 109.47470 * 300.00215 * 20 18 17 36 36 H 1.09000 * 109.46980 * 59.99963 * 21 18 17 37 37 H 1.08997 * 109.47263 * 179.97438 * 21 18 17 38 38 H 1.09005 * 109.47387 * 300.00409 * 21 18 17 39 39 H 1.08004 * 126.33576 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8297 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6298 -0.5457 4.4123 10 1 1.3433 -0.9491 5.1120 11 1 2.4860 -2.5661 3.7120 12 7 2.0183 -0.6906 -1.1961 13 7 2.2463 0.0289 -2.3765 14 6 2.6747 -0.5851 -3.4398 15 6 2.9138 0.1681 -4.6752 16 7 3.3445 -0.3357 -5.8121 17 6 3.4399 0.6554 -6.7108 18 6 3.8939 0.5151 -8.1409 19 6 5.3142 1.0663 -8.2814 20 6 3.8786 -0.9623 -8.5382 21 6 2.9499 1.2989 -9.0549 22 6 3.0573 1.7969 -6.1098 23 8 2.7240 1.4903 -4.8395 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7083 1.1610 3.4844 28 1 2.1800 -1.6468 -1.1721 29 1 2.8544 -1.6497 -3.4132 30 1 5.9868 0.5080 -7.6302 31 1 5.6425 0.9653 -9.3158 32 1 5.3251 2.1189 -7.9983 33 1 2.8667 -1.3550 -8.4380 34 1 4.2066 -1.0637 -9.5727 35 1 4.5511 -1.5207 -7.8870 36 1 2.9608 2.3514 -8.7718 37 1 3.2786 1.1978 -10.0892 38 1 1.9380 0.9062 -8.9548 39 1 3.0200 2.7769 -6.5622 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905457056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:51 Heat of formation + Delta-G solvation = 28.895581 kcal Electronic energy + Delta-G solvation = -19261.969191 eV Core-core repulsion = 16206.122747 eV Total energy + Delta-G solvation = -3055.846444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.20891 -38.42942 -38.14445 -36.02063 -35.01835 -33.42343 -31.01483 -29.08241 -28.08051 -28.01467 -27.31888 -24.87955 -23.93843 -22.35172 -21.84829 -20.17858 -18.79986 -17.96941 -17.57754 -17.51560 -17.01601 -16.10727 -15.78031 -15.18943 -15.00260 -14.88551 -14.57109 -14.37048 -14.29457 -13.47861 -13.18691 -12.96117 -12.90200 -12.81684 -12.66177 -12.51634 -12.29962 -12.20597 -12.13389 -12.09458 -11.88326 -11.65580 -11.40921 -11.38660 -11.08263 -10.60756 -10.00779 -8.63788 -8.20239 -6.37204 -0.00594 1.21986 1.43710 1.44314 1.54384 1.65658 2.01325 2.07766 2.42143 3.09437 3.14720 3.69118 3.91271 4.11488 4.19242 4.31474 4.38457 4.63230 4.76378 4.82976 4.84949 4.90163 4.94319 4.95736 5.02491 5.05523 5.07606 5.08602 5.11417 5.22715 5.44671 5.47302 5.48535 5.52413 5.68629 5.81064 6.07637 6.29154 6.73915 6.77811 7.33685 7.49985 8.85469 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.047708 B = 0.003033 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.763454 B = 9230.518718 C = 9396.877796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.303 3.697 3 H 0.005 0.995 4 C -0.549 4.549 5 H 0.066 0.934 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.972 3.028 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.265 1.265 12 N -0.616 5.616 13 N -0.208 5.208 14 C 0.052 3.948 15 C 0.239 3.761 16 N -0.475 5.475 17 C -0.009 4.009 18 C 0.012 3.988 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.074 4.074 23 O -0.207 6.207 24 H 0.071 0.929 25 H 0.018 0.982 26 H 0.035 0.965 27 H 0.268 0.732 28 H 0.383 0.617 29 H 0.163 0.837 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 0.149 -21.801 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.200 3.800 3 H 0.023 0.977 4 C -0.588 4.588 5 H 0.084 0.916 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.796 3.204 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.189 1.189 12 N -0.355 5.355 13 N -0.024 5.024 14 C -0.157 4.157 15 C 0.035 3.965 16 N -0.208 5.208 17 C -0.132 4.132 18 C 0.011 3.989 19 C -0.193 4.193 20 C -0.186 4.186 21 C -0.196 4.196 22 C -0.146 4.146 23 O -0.092 6.092 24 H 0.090 0.910 25 H 0.037 0.963 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.221 0.779 29 H 0.180 0.820 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 5.150 0.637 -21.152 21.779 hybrid contribution 0.156 -0.708 1.092 1.311 sum 5.305 -0.071 -20.060 20.750 Atomic orbital electron populations 1.22042 0.98357 0.99499 0.99904 1.18281 0.90591 0.91895 0.79212 0.97668 1.21502 1.32767 1.13723 0.90840 0.91591 1.25707 0.94789 0.95620 1.01943 1.70010 1.36659 1.23718 1.24816 0.85352 0.77915 0.78999 0.78116 1.20292 1.20556 1.18889 1.48679 1.72686 1.08283 1.05867 1.74090 1.04951 1.28904 0.94449 1.22179 1.08882 0.97220 0.87403 1.23193 1.00606 0.78358 0.94321 1.70630 1.18262 1.32903 0.99014 1.22197 1.04147 0.88462 0.98351 1.19109 0.96703 0.97785 0.85296 1.21889 0.93444 1.01010 1.02981 1.21698 1.01525 0.93897 1.01512 1.21928 0.98098 0.99971 0.99557 1.25601 1.04889 1.02994 0.81072 1.84699 1.65628 1.27221 1.31650 0.90987 0.96283 0.94598 0.92305 0.77878 0.82024 0.93926 0.89727 0.91637 0.93746 0.90375 0.93488 0.91088 0.89770 0.93236 0.73490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 9.29 71.98 0.67 -6.21 16 2 C 0.30 15.67 3.23 44.24 0.14 15.81 16 3 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 4 C -0.55 -29.32 8.74 25.60 0.22 -29.09 16 5 H 0.07 3.38 7.79 -2.91 -0.02 3.36 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -51.19 11.32 21.45 0.24 -50.94 16 8 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 12 N -0.62 -27.20 6.10 -172.53 -1.05 -28.25 16 13 N -0.21 -8.73 11.48 -52.65 -0.60 -9.34 16 14 C 0.05 1.85 11.05 87.15 0.96 2.81 16 15 C 0.24 8.14 8.11 86.92 0.71 8.84 16 16 N -0.47 -14.73 10.70 -293.68 -3.14 -17.87 16 17 C -0.01 -0.23 5.52 41.37 0.23 0.00 16 18 C 0.01 0.20 0.95 -52.93 -0.05 0.15 16 19 C -0.14 -1.91 8.46 71.98 0.61 -1.30 16 20 C -0.13 -2.32 8.04 71.98 0.58 -1.74 16 21 C -0.14 -1.68 8.19 71.98 0.59 -1.09 16 22 C -0.07 -1.77 11.44 66.98 0.77 -1.01 16 23 O -0.21 -6.88 10.80 -10.76 -0.12 -7.00 16 24 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.38 15.12 8.58 -213.31 -1.83 13.29 16 29 H 0.16 4.82 8.03 -2.91 -0.02 4.79 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.99 8.09 -2.39 -0.02 0.98 16 36 H 0.07 0.67 7.49 -2.39 -0.02 0.65 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.25 3.46 7.65 -2.91 -0.02 3.44 16 Total: -1.00 -63.59 333.00 2.43 -61.16 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.79 Total: 19.57 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.87 Total: -11.31 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -4.56 Total: -106.40 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.12 Total: -7.00 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -63.59 2.43 -61.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905457056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.058 kcal (2) G-P(sol) polarization free energy of solvation -63.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds