Wall clock time and date at job start Mon Mar 30 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00243 * 2 1 4 4 H 1.09004 * 109.46841 * 30.00454 * 3 2 1 5 5 C 1.53008 * 109.46824 * 150.00291 * 3 2 1 6 6 C 1.50702 * 109.47289 * 270.00256 * 3 2 1 7 7 C 1.39010 * 126.77133 * 314.94235 * 6 3 2 8 8 C 1.41494 * 126.02173 * 0.07177 * 7 6 3 9 9 H 1.08005 * 120.00125 * 359.97438 * 8 7 6 10 10 C 1.39743 * 119.99943 * 179.97438 * 8 7 6 11 11 N 1.30980 * 119.99786 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99968 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46959 * 59.99775 * 12 10 8 14 14 H 1.48495 * 109.47484 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47260 * 300.00237 * 12 10 8 16 16 N 1.34844 * 107.95787 * 180.02562 * 7 6 3 17 17 N 1.28663 * 109.63489 * 0.02562 * 16 7 6 18 18 N 1.35013 * 126.77126 * 135.00385 * 6 3 2 19 19 C 1.46505 * 126.49221 * 0.21522 * 18 6 3 20 20 H 1.09002 * 109.47181 * 359.70922 * 19 18 6 21 21 C 1.52998 * 109.47127 * 119.71543 * 19 18 6 22 22 C 1.53001 * 109.46840 * 239.71271 * 19 18 6 23 23 C 1.53000 * 117.49571 * 128.62298 * 22 19 18 24 24 C 1.53000 * 60.00088 * 252.50493 * 23 22 19 25 25 H 1.09000 * 109.47410 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46974 * 299.99947 * 1 2 3 27 27 H 1.08998 * 109.46928 * 59.99502 * 1 2 3 28 28 H 1.09001 * 109.46757 * 180.02562 * 5 3 2 29 29 H 1.09006 * 109.46889 * 300.00129 * 5 3 2 30 30 H 1.08995 * 109.47063 * 59.99850 * 5 3 2 31 31 H 0.97001 * 119.99494 * 180.02562 * 11 10 8 32 32 H 1.09002 * 109.47597 * 59.99634 * 21 19 18 33 33 H 1.09003 * 109.47135 * 180.02562 * 21 19 18 34 34 H 1.09005 * 109.46565 * 299.99584 * 21 19 18 35 35 H 1.08998 * 115.55065 * 274.32516 * 22 19 18 36 36 H 1.08997 * 117.50262 * 0.02562 * 23 22 19 37 37 H 1.09007 * 117.49881 * 145.01674 * 23 22 19 38 38 H 1.08994 * 117.50244 * 252.51187 * 24 23 22 39 39 H 1.09000 * 117.51178 * 107.47797 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3590 1.2630 0.7212 6 6 2.2146 1.7644 -1.4208 7 6 2.7457 1.0197 -2.4676 8 6 3.1954 -0.3197 -2.3917 9 1 3.1418 -0.8551 -1.4552 10 6 3.7091 -0.9498 -3.5283 11 7 3.7737 -0.3006 -4.6641 12 14 4.3035 -2.7178 -3.4278 13 1 3.1806 -3.5944 -3.0081 14 1 4.7974 -3.1505 -4.7597 15 1 5.4042 -2.8144 -2.4358 16 7 2.7559 1.7984 -3.5684 17 7 2.2759 2.9574 -3.2826 18 7 1.9189 2.9803 -1.9278 19 6 1.3400 4.1112 -1.1982 20 1 1.1713 3.8257 -0.1599 21 6 2.3033 5.2987 -1.2506 22 6 0.0090 4.5055 -1.8415 23 6 -1.2094 4.6299 -0.9244 24 6 -1.0946 3.4467 -1.8876 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.8022 2.2589 0.7216 29 1 3.2112 0.9311 1.7489 30 1 4.0242 0.5691 0.2074 31 1 4.1299 -0.7382 -5.4531 32 1 2.4721 5.5842 -2.2890 33 1 1.8728 6.1400 -0.7074 34 1 3.2516 5.0177 -0.7923 35 1 0.0793 5.1960 -2.6819 36 1 -1.0626 4.4313 0.1372 37 1 -1.9409 5.4026 -1.1613 38 1 -1.7504 3.4409 -2.7581 39 1 -0.8721 2.4691 -1.4599 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:53 Heat of formation + Delta-G solvation = 44.197832 kcal Electronic energy + Delta-G solvation = -21338.534792 eV Core-core repulsion = 18283.351903 eV Total energy + Delta-G solvation = -3055.182888 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96076 -38.82342 -38.76545 -35.42858 -34.54064 -33.14708 -30.91498 -30.33441 -27.25594 -26.92980 -25.26977 -24.14107 -23.31242 -22.98784 -21.23354 -20.50176 -18.74904 -17.55959 -17.40868 -16.66166 -16.48451 -16.05073 -15.81628 -15.62095 -15.21063 -14.72539 -14.20805 -13.69756 -13.51271 -13.36145 -13.22162 -13.05960 -12.83446 -12.81236 -12.77620 -12.47970 -12.35216 -12.31753 -11.94272 -11.73898 -11.56021 -11.36448 -11.17187 -11.06972 -10.78026 -10.44208 -10.21249 -9.29662 -8.25269 -6.09032 1.03411 1.42919 1.46745 1.55247 1.90832 2.36433 2.39363 2.91367 3.06401 3.42317 3.61881 3.81015 3.83485 3.98120 4.05925 4.11456 4.28186 4.37616 4.43849 4.52171 4.60889 4.72120 4.73004 4.79897 4.84386 4.87568 4.95672 4.97193 5.11391 5.14889 5.18318 5.20556 5.33626 5.41892 5.57466 5.63630 6.40769 6.54202 6.59235 6.97987 7.18723 8.37745 8.74021 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.007337 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.343661 B = 3815.270057 C = 4265.841413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.191 3.809 4 H 0.077 0.923 5 C -0.136 4.136 6 C -0.122 4.122 7 C 0.129 3.871 8 C -0.460 4.460 9 H 0.091 0.909 10 C 0.018 3.982 11 N -0.829 5.829 12 Si 0.978 3.022 13 H -0.262 1.262 14 H -0.279 1.279 15 H -0.259 1.259 16 N -0.292 5.292 17 N -0.155 5.155 18 N -0.342 5.342 19 C 0.176 3.824 20 H 0.112 0.888 21 C -0.147 4.147 22 C -0.173 4.173 23 C -0.128 4.128 24 C -0.192 4.192 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.269 0.731 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 7.207 13.634 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.131 3.869 4 H 0.094 0.906 5 C -0.193 4.193 6 C -0.256 4.256 7 C -0.003 4.003 8 C -0.497 4.497 9 H 0.109 0.891 10 C -0.195 4.195 11 N -0.458 5.458 12 Si 0.800 3.200 13 H -0.187 1.187 14 H -0.205 1.205 15 H -0.183 1.183 16 N -0.162 5.162 17 N -0.131 5.131 18 N -0.139 5.139 19 C 0.074 3.926 20 H 0.130 0.870 21 C -0.205 4.205 22 C -0.193 4.193 23 C -0.165 4.165 24 C -0.230 4.230 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.106 0.894 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.808 7.890 12.071 16.399 hybrid contribution 0.168 -1.155 -0.059 1.169 sum -7.640 6.735 12.012 15.748 Atomic orbital electron populations 1.22845 0.80818 1.03228 0.99519 1.88000 1.20332 1.27487 1.94350 1.20047 0.95892 0.84361 0.86622 0.90579 1.21773 0.94871 1.02422 1.00272 1.22588 1.15663 0.88318 0.99037 1.19418 0.98701 0.95634 0.86571 1.18910 1.38592 0.95049 0.97110 0.89104 1.26733 0.94690 1.03577 0.94482 1.70192 1.36364 1.38462 1.00816 0.85325 0.79244 0.77561 0.77841 1.18699 1.20453 1.18348 1.75081 1.17139 0.98359 1.25600 1.81297 1.21404 1.17604 0.92754 1.49992 1.44996 1.10188 1.08715 1.21126 0.92172 0.84698 0.94565 0.87029 1.22035 0.98494 0.97148 1.02806 1.22518 0.89322 1.03765 1.03661 1.23141 0.97339 0.99085 0.96903 1.22825 1.02379 0.94580 1.03183 0.88931 0.91576 0.96513 0.91075 0.89394 0.93428 0.92095 0.93287 0.87159 0.92819 0.87861 0.86654 0.86216 0.89351 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 10.81 113.37 1.23 2.19 16 2 O -0.38 -14.66 8.79 -148.98 -1.31 -15.97 16 3 C 0.19 6.85 2.87 29.85 0.09 6.93 16 4 H 0.08 2.17 6.31 -2.39 -0.02 2.16 16 5 C -0.14 -4.37 9.55 71.98 0.69 -3.68 16 6 C -0.12 -5.61 6.04 42.26 0.26 -5.35 16 7 C 0.13 7.42 6.69 39.67 0.27 7.68 16 8 C -0.46 -26.59 8.68 23.44 0.20 -26.39 16 9 H 0.09 5.01 6.58 -2.91 -0.02 5.00 16 10 C 0.02 1.03 5.49 85.18 0.47 1.50 16 11 N -0.83 -50.74 11.92 21.80 0.26 -50.48 16 12 Si 0.98 43.23 29.56 68.60 2.03 45.26 16 13 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 16 N -0.29 -18.01 10.55 -52.52 -0.55 -18.56 16 17 N -0.15 -8.35 13.62 37.02 0.50 -7.84 16 18 N -0.34 -14.72 3.17 -311.27 -0.99 -15.71 16 19 C 0.18 5.25 3.26 44.99 0.15 5.40 16 20 H 0.11 2.73 6.27 -2.39 -0.01 2.71 16 21 C -0.15 -3.83 9.45 71.98 0.68 -3.15 16 22 C -0.17 -4.67 5.31 -10.79 -0.06 -4.72 16 23 C -0.13 -2.34 10.18 30.59 0.31 -2.03 16 24 C -0.19 -5.34 10.12 30.60 0.31 -5.03 16 25 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 27 H 0.02 0.56 7.01 -2.39 -0.02 0.54 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.05 1.84 7.86 -2.39 -0.02 1.82 16 31 H 0.27 15.30 8.30 -92.71 -0.77 14.53 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.10 2.92 8.11 -2.39 -0.02 2.90 16 36 H 0.12 1.65 8.05 -2.39 -0.02 1.63 16 37 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.07 2.34 7.01 -2.39 -0.02 2.32 16 Total: -1.00 -76.67 326.09 5.56 -71.11 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.04 Total: 18.84 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 4.58 Total: -26.64 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -0.78 Total: -92.59 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -1.31 Total: -15.97 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -76.67 5.56 -71.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.305 kcal (2) G-P(sol) polarization free energy of solvation -76.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds