Wall clock time and date at job start Mon Mar 30 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99604 * 2 1 4 4 H 1.08993 * 109.47535 * 330.00040 * 3 2 1 5 5 C 1.52997 * 109.46771 * 209.99654 * 3 2 1 6 6 C 1.50707 * 109.46899 * 90.00022 * 3 2 1 7 7 C 1.39012 * 126.77394 * 45.13428 * 6 3 2 8 8 C 1.41498 * 126.01932 * 0.02989 * 7 6 3 9 9 H 1.07995 * 120.00061 * 355.06061 * 8 7 6 10 10 C 1.39741 * 119.99810 * 175.06114 * 8 7 6 11 11 N 1.30986 * 119.99733 * 6.01990 * 10 8 7 12 12 Si 1.86799 * 119.99937 * 186.02206 * 10 8 7 13 13 H 1.48495 * 109.47302 * 94.97869 * 12 10 8 14 14 H 1.48500 * 109.46806 * 214.97720 * 12 10 8 15 15 H 1.48503 * 109.46847 * 334.97829 * 12 10 8 16 16 N 1.34843 * 107.95635 * 180.26304 * 7 6 3 17 17 N 1.28665 * 109.63464 * 359.76597 * 16 7 6 18 18 N 1.35022 * 126.76954 * 224.99445 * 6 3 2 19 19 C 1.46496 * 126.48986 * 0.02562 * 18 6 3 20 20 H 1.09000 * 109.47782 * 359.71581 * 19 18 6 21 21 C 1.53008 * 109.47276 * 239.70880 * 19 18 6 22 22 C 1.53002 * 109.46726 * 119.71361 * 19 18 6 23 23 C 1.53005 * 117.49835 * 248.61746 * 22 19 18 24 24 C 1.53001 * 60.00168 * 252.50852 * 23 22 19 25 25 H 1.09002 * 109.46972 * 59.99828 * 1 2 3 26 26 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47269 * 300.00299 * 1 2 3 28 28 H 1.09004 * 109.47529 * 299.99942 * 5 3 2 29 29 H 1.09004 * 109.47562 * 60.00460 * 5 3 2 30 30 H 1.09008 * 109.47088 * 180.02562 * 5 3 2 31 31 H 0.97003 * 119.99575 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.47023 * 300.00523 * 21 19 18 33 33 H 1.08997 * 109.46368 * 60.00726 * 21 19 18 34 34 H 1.09000 * 109.47032 * 180.02562 * 21 19 18 35 35 H 1.09000 * 115.55539 * 34.32737 * 22 19 18 36 36 H 1.08994 * 117.49894 * 0.02562 * 23 22 19 37 37 H 1.09001 * 117.49415 * 145.02076 * 23 22 19 38 38 H 1.08993 * 117.50257 * 252.50861 * 24 23 22 39 39 H 1.09002 * 117.49282 * 107.48731 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 3.3589 1.2633 -0.7212 6 6 2.2145 1.7644 1.4209 7 6 2.7471 1.0203 2.4673 8 6 3.2005 -0.3179 2.3903 9 1 3.0754 -0.8786 1.4759 10 6 3.8101 -0.9138 3.4976 11 7 3.8563 -0.2770 4.6413 12 14 4.5590 -2.6184 3.3466 13 1 6.0106 -2.4975 3.0577 14 1 4.3677 -3.3577 4.6202 15 1 3.8941 -3.3551 2.2418 16 7 2.7507 1.7966 3.5698 17 7 2.2694 2.9552 3.2843 18 7 1.9187 2.9803 1.9280 19 6 1.3352 4.1095 1.1996 20 1 1.1724 3.8262 0.1598 21 6 2.2904 5.3034 1.2595 22 6 -0.0010 4.4930 1.8388 23 6 -1.2729 4.2257 1.0314 24 6 -0.7723 5.6594 1.2179 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 4.0242 0.5694 -0.2073 29 1 3.2112 0.9314 -1.7489 30 1 3.8024 2.2591 -0.7208 31 1 4.2798 -0.6906 5.4098 32 1 2.4530 5.5867 2.2994 33 1 3.2422 5.0302 0.8041 34 1 1.8560 6.1437 0.7179 35 1 -0.0566 4.3720 2.9207 36 1 -1.1577 3.7763 0.0451 37 1 -2.1654 3.9286 1.5822 38 1 -1.3355 6.3056 1.8912 39 1 -0.3278 6.1536 0.3540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:57 Heat of formation + Delta-G solvation = 44.175604 kcal Electronic energy + Delta-G solvation = -21163.308284 eV Core-core repulsion = 18108.124432 eV Total energy + Delta-G solvation = -3055.183852 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97159 -38.89184 -38.77273 -35.46190 -34.53727 -33.12430 -30.78376 -30.35184 -27.23620 -26.96414 -25.52977 -24.15565 -23.23870 -22.86805 -21.13974 -20.54503 -18.87261 -17.66178 -17.40295 -16.60228 -16.37850 -16.12587 -15.71036 -15.48684 -15.24767 -14.64295 -14.17747 -14.08199 -13.44888 -13.39001 -13.23013 -13.16097 -12.87222 -12.80484 -12.76246 -12.37211 -12.32624 -12.29351 -11.94483 -11.75216 -11.55157 -11.42281 -11.11178 -11.01639 -10.80448 -10.45071 -10.22415 -9.32103 -8.26883 -6.10461 0.99618 1.43461 1.44212 1.58586 1.92395 2.35374 2.38329 2.85246 3.05744 3.46983 3.59616 3.81911 3.88470 3.95564 4.06862 4.12866 4.29555 4.38751 4.44705 4.53675 4.65880 4.68882 4.77011 4.79041 4.84574 4.88089 4.95993 4.96521 5.14348 5.15154 5.18140 5.23725 5.31435 5.43020 5.55315 5.62351 6.39870 6.53055 6.59243 6.96309 7.17633 8.34171 8.72985 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.006922 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.692831 B = 4044.073846 C = 4580.813402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.191 3.809 4 H 0.078 0.922 5 C -0.136 4.136 6 C -0.121 4.121 7 C 0.128 3.872 8 C -0.460 4.460 9 H 0.093 0.907 10 C 0.018 3.982 11 N -0.829 5.829 12 Si 0.980 3.020 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.254 1.254 16 N -0.291 5.291 17 N -0.159 5.159 18 N -0.346 5.346 19 C 0.181 3.819 20 H 0.112 0.888 21 C -0.148 4.148 22 C -0.188 4.188 23 C -0.176 4.176 24 C -0.138 4.138 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.015 0.985 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.270 0.730 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 7.692 -14.000 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C 0.131 3.869 4 H 0.096 0.904 5 C -0.193 4.193 6 C -0.255 4.255 7 C -0.004 4.004 8 C -0.496 4.496 9 H 0.111 0.889 10 C -0.195 4.195 11 N -0.458 5.458 12 Si 0.802 3.198 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.177 1.177 16 N -0.161 5.161 17 N -0.135 5.135 18 N -0.142 5.142 19 C 0.079 3.921 20 H 0.130 0.870 21 C -0.206 4.206 22 C -0.208 4.208 23 C -0.212 4.212 24 C -0.175 4.175 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.558 8.371 -12.438 16.790 hybrid contribution 0.186 -1.101 0.100 1.121 sum -7.372 7.270 -12.338 16.107 Atomic orbital electron populations 1.22820 0.80746 1.03225 0.99549 1.87998 1.20407 1.27471 1.94344 1.20056 0.95977 0.84395 0.86464 0.90440 1.21772 0.94831 1.02445 1.00294 1.22660 1.15661 0.88046 0.99147 1.19467 0.98657 0.95818 0.86497 1.18967 1.35956 0.95132 0.99590 0.88890 1.26768 0.95539 1.03001 0.94228 1.70209 1.35462 1.38853 1.01319 0.85230 0.78801 0.77390 0.78416 1.19303 1.20365 1.17748 1.75078 1.17053 0.98463 1.25530 1.81291 1.21791 1.17744 0.92648 1.49959 1.45128 1.10368 1.08761 1.21064 0.91951 0.84534 0.94538 0.87005 1.22045 0.98566 0.97152 1.02791 1.22406 0.92020 1.07795 0.98567 1.23141 0.96419 1.00235 1.01448 1.23081 1.01045 0.90341 1.03073 0.91482 0.88890 0.96669 0.93347 0.89318 0.91096 0.92059 0.93445 0.92838 0.87122 0.90497 0.87393 0.88914 0.87559 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 10.81 113.37 1.23 2.22 16 2 O -0.38 -14.73 8.73 -148.98 -1.30 -16.03 16 3 C 0.19 6.89 2.88 29.85 0.09 6.98 16 4 H 0.08 2.22 6.31 -2.39 -0.02 2.20 16 5 C -0.14 -4.37 9.54 71.98 0.69 -3.68 16 6 C -0.12 -5.62 6.04 42.26 0.26 -5.37 16 7 C 0.13 7.40 6.69 39.67 0.27 7.67 16 8 C -0.46 -26.63 8.71 23.44 0.20 -26.42 16 9 H 0.09 5.15 6.64 -2.91 -0.02 5.13 16 10 C 0.02 1.00 5.49 85.18 0.47 1.47 16 11 N -0.83 -50.79 11.95 21.80 0.26 -50.53 16 12 Si 0.98 43.13 29.56 68.60 2.03 45.16 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.25 -10.62 7.11 99.48 0.71 -9.92 16 16 N -0.29 -18.12 10.58 -52.51 -0.56 -18.68 16 17 N -0.16 -8.69 13.61 37.02 0.50 -8.18 16 18 N -0.35 -15.16 3.29 -311.26 -1.02 -16.18 16 19 C 0.18 5.49 3.30 45.00 0.15 5.64 16 20 H 0.11 2.77 6.27 -2.39 -0.01 2.75 16 21 C -0.15 -3.90 9.31 71.98 0.67 -3.23 16 22 C -0.19 -5.23 5.40 -10.79 -0.06 -5.28 16 23 C -0.18 -3.69 10.18 30.60 0.31 -3.38 16 24 C -0.14 -2.43 9.73 30.60 0.30 -2.14 16 25 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 1.86 7.99 -2.39 -0.02 1.85 16 29 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.27 15.26 8.30 -92.71 -0.77 14.49 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 1.92 7.29 -2.39 -0.02 1.91 16 35 H 0.08 2.74 8.13 -2.39 -0.02 2.72 16 36 H 0.11 1.94 8.05 -2.39 -0.02 1.92 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.12 1.54 7.61 -2.39 -0.02 1.52 16 Total: -1.00 -77.57 326.91 5.51 -72.06 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 1.03 Total: 17.92 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 4.56 Total: -25.53 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -0.81 Total: -93.58 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.30 Total: -16.03 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -77.57 5.51 -72.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.235 kcal (2) G-P(sol) polarization free energy of solvation -77.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds