Wall clock time and date at job start Mon Mar 30 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 108.44543 * 2 1 4 4 C 1.51798 * 108.61588 * 117.86483 * 2 1 3 5 5 C 1.53060 * 110.74145 * 187.92754 * 4 2 1 6 6 C 1.51419 * 108.49765 * 275.08909 * 5 4 2 7 7 O 1.21286 * 119.88710 * 251.23295 * 6 5 4 8 8 N 1.33368 * 120.22293 * 71.20898 * 6 5 4 9 9 C 1.46491 * 119.78818 * 180.30697 * 8 6 5 10 10 C 1.53001 * 109.47079 * 93.69989 * 9 8 6 11 11 C 1.50701 * 115.56298 * 272.39189 * 10 9 8 12 12 H 1.08006 * 119.99740 * 140.22718 * 11 10 9 13 13 C 1.37875 * 119.99738 * 320.23295 * 11 10 9 14 14 N 1.31518 * 119.99525 * 169.15109 * 13 11 10 15 15 Si 1.86797 * 120.00178 * 349.14823 * 13 11 10 16 16 H 1.48491 * 109.47090 * 95.38661 * 15 13 11 17 17 H 1.48503 * 109.46785 * 215.38583 * 15 13 11 18 18 H 1.48497 * 109.47178 * 335.38009 * 15 13 11 19 19 C 1.53006 * 117.49783 * 58.08473 * 10 9 8 20 20 C 1.52999 * 60.03353 * 107.47668 * 19 10 9 21 21 C 1.47199 * 120.42467 * 0.58217 * 8 6 5 22 22 C 1.51771 * 108.61709 * 242.13076 * 2 1 3 23 23 H 1.08999 * 109.47121 * 297.38486 * 1 2 3 24 24 H 1.09001 * 109.47535 * 57.39008 * 1 2 3 25 25 H 1.09007 * 109.46885 * 177.38920 * 1 2 3 26 26 H 1.08997 * 109.47492 * 179.41862 * 3 2 1 27 27 H 1.08999 * 109.46803 * 299.42191 * 3 2 1 28 28 H 1.09003 * 109.46941 * 59.41676 * 3 2 1 29 29 H 1.08999 * 109.21642 * 67.60650 * 4 2 1 30 30 H 1.08994 * 109.18621 * 308.23580 * 4 2 1 31 31 H 1.08999 * 109.63127 * 155.38388 * 5 4 2 32 32 H 1.09001 * 109.79911 * 34.89080 * 5 4 2 33 33 H 1.08995 * 109.47687 * 333.69792 * 9 8 6 34 34 H 1.09004 * 109.47230 * 213.69601 * 9 8 6 35 35 H 0.97001 * 119.99913 * 185.01097 * 14 13 11 36 36 H 1.09004 * 117.49786 * 214.98276 * 19 10 9 37 37 H 1.08996 * 117.49822 * 359.97056 * 19 10 9 38 38 H 1.09004 * 117.49664 * 107.50068 * 20 19 10 39 39 H 1.09002 * 117.50022 * 252.52123 * 20 19 10 40 40 H 1.09007 * 109.60254 * 47.51840 * 21 8 6 41 41 H 1.08997 * 109.60848 * 168.01175 * 21 8 6 42 42 H 1.08994 * 109.20120 * 292.23590 * 22 2 1 43 43 H 1.09002 * 109.19934 * 51.56187 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0141 1.4515 0.0000 4 6 2.0146 -0.6724 1.2718 5 6 3.5311 -0.5264 1.4181 6 6 4.1984 -1.6386 0.6367 7 8 4.7463 -2.5464 1.2256 8 7 4.1853 -1.6236 -0.6968 9 6 4.8280 -2.7080 -1.4432 10 6 3.7901 -3.7807 -1.7792 11 6 3.5894 -4.8429 -0.7292 12 1 2.5959 -5.2070 -0.5124 13 6 4.6740 -5.3498 -0.0454 14 7 4.4880 -6.1126 1.0098 15 14 6.4074 -4.9534 -0.6175 16 1 6.9275 -3.7916 0.1472 17 1 7.2851 -6.1293 -0.3892 18 1 6.3876 -4.6243 -2.0654 19 6 2.5671 -3.3505 -2.5918 20 6 3.6579 -4.2015 -3.2451 21 6 3.5344 -0.5213 -1.4235 22 6 2.0145 -0.6723 -1.2715 23 1 -0.3633 0.4727 0.9125 24 1 -0.3634 0.5538 -0.8656 25 1 -0.3633 -1.0267 -0.0468 26 1 3.1038 1.4711 0.0104 27 1 1.6501 1.9558 -0.8951 28 1 1.6330 1.9615 0.8847 29 1 1.7575 -1.7311 1.2382 30 1 1.5251 -0.2113 2.1296 31 1 3.8065 -0.6016 2.4700 32 1 3.8488 0.4392 1.0246 33 1 5.6205 -3.1465 -0.8369 34 1 5.2530 -2.3121 -2.3656 35 1 5.2485 -6.4095 1.5337 36 1 1.6173 -3.8357 -2.3668 37 1 2.5017 -2.3032 -2.8865 38 1 3.4257 -5.2467 -3.4500 39 1 4.3104 -3.7140 -3.9694 40 1 3.8533 0.4325 -1.0030 41 1 3.8059 -0.5678 -2.4781 42 1 1.7598 -1.7315 -1.2363 43 1 1.5225 -0.2138 -2.1293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:55 Heat of formation + Delta-G solvation = 3.163532 kcal Electronic energy + Delta-G solvation = -22504.902117 eV Core-core repulsion = 19551.480191 eV Total energy + Delta-G solvation = -2953.421926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30461 -37.54823 -36.75877 -34.04738 -31.97082 -31.21909 -29.55672 -27.39718 -26.58788 -25.12550 -23.68062 -23.44318 -21.52267 -19.25711 -18.47090 -18.23536 -16.67599 -16.52019 -15.54008 -14.96874 -14.87863 -14.53041 -14.37395 -13.62957 -13.25575 -13.08364 -12.83929 -12.66623 -12.32799 -12.15009 -11.97360 -11.85501 -11.66974 -11.54860 -11.37830 -11.03435 -10.82684 -10.51059 -10.37860 -10.33232 -10.25630 -10.10896 -9.74946 -9.50351 -9.06787 -8.80742 -8.62527 -8.20035 -7.78238 -5.91894 -3.86923 3.43145 3.46634 3.48135 3.53336 3.74223 4.58906 4.75217 4.79724 4.81893 4.96995 5.07457 5.23491 5.45839 5.49660 5.56035 5.58419 5.65017 5.71715 5.73637 5.78471 5.84074 5.87488 5.92948 5.98790 6.07886 6.12003 6.14805 6.26504 6.29272 6.34120 6.36535 6.51193 6.52649 6.60777 6.71186 6.78373 7.08376 7.16404 7.34561 7.91936 8.20686 8.66555 9.06956 9.10299 9.73173 11.19691 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.008497 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.362039 B = 3294.611894 C = 3656.957622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.152 4.152 4 C -0.100 4.100 5 C -0.141 4.141 6 C 0.506 3.494 7 O -0.512 6.512 8 N -0.597 5.597 9 C 0.136 3.864 10 C 0.004 3.996 11 C -0.486 4.486 12 H 0.070 0.930 13 C 0.101 3.899 14 N -0.887 5.887 15 Si 0.883 3.117 16 H -0.271 1.271 17 H -0.303 1.303 18 H -0.268 1.268 19 C -0.189 4.189 20 C -0.211 4.211 21 C 0.109 3.891 22 C -0.139 4.139 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 16.427 -4.285 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.209 4.209 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.292 3.708 7 O -0.386 6.386 8 N -0.331 5.331 9 C 0.015 3.985 10 C 0.002 3.998 11 C -0.522 4.522 12 H 0.088 0.912 13 C -0.104 4.104 14 N -0.523 5.523 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.231 1.231 18 H -0.193 1.193 19 C -0.226 4.226 20 C -0.250 4.250 21 C -0.014 4.014 22 C -0.177 4.177 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.146 15.765 -3.826 16.744 hybrid contribution 0.768 0.213 -0.351 0.871 sum -3.378 15.978 -4.176 16.857 Atomic orbital electron populations 1.21925 0.94680 1.01992 1.01229 1.20118 0.95634 0.95287 0.95286 1.22194 1.01363 0.95817 1.01513 1.21244 0.93574 1.02256 0.96756 1.22087 0.96580 0.98219 1.01206 1.20310 0.80622 0.87441 0.82383 1.90819 1.43533 1.35885 1.68408 1.47627 1.56399 1.23250 1.05776 1.21581 0.95548 0.87168 0.94221 1.19707 0.93865 0.95934 0.90280 1.20107 0.94924 1.19092 1.18100 0.91209 1.24768 0.98633 0.93275 0.93679 1.69836 1.31202 1.35620 1.15635 0.86947 0.85552 0.76738 0.79250 1.19836 1.23111 1.19332 1.22861 0.94289 0.97802 1.07646 1.23220 1.03232 0.99342 0.99207 1.21956 0.92552 0.89864 0.97050 1.22211 0.95487 1.03596 0.96421 0.92911 0.92885 0.92441 0.91910 0.92778 0.92813 0.90708 0.91441 0.89291 0.89697 0.90130 0.92919 0.92696 0.90373 0.90554 0.89804 0.91710 0.90859 0.90537 0.88719 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.25 37.16 0.31 -1.19 16 2 C -0.06 -0.74 0.70 -155.74 -0.11 -0.85 16 3 C -0.15 -1.43 7.42 37.16 0.28 -1.15 16 4 C -0.10 -1.41 4.46 -27.31 -0.12 -1.53 16 5 C -0.14 -2.15 5.46 -27.50 -0.15 -2.30 16 6 C 0.51 10.56 6.79 -11.26 -0.08 10.48 16 7 O -0.51 -13.63 15.22 5.55 0.08 -13.55 16 8 N -0.60 -11.43 2.37 -172.92 -0.41 -11.84 16 9 C 0.14 3.02 4.28 -4.05 -0.02 3.01 16 10 C 0.00 0.10 1.39 -155.61 -0.22 -0.12 16 11 C -0.49 -14.14 9.55 -34.44 -0.33 -14.47 16 12 H 0.07 2.23 8.06 -52.48 -0.42 1.80 16 13 C 0.10 3.05 4.75 -17.82 -0.08 2.96 16 14 N -0.89 -28.55 13.95 55.43 0.77 -27.78 16 15 Si 0.88 23.64 23.69 -169.99 -4.03 19.62 16 16 H -0.27 -7.38 6.81 56.52 0.38 -6.99 16 17 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 18 H -0.27 -6.66 6.70 56.52 0.38 -6.28 16 19 C -0.19 -3.75 7.55 -26.73 -0.20 -3.96 16 20 C -0.21 -4.47 9.88 -26.69 -0.26 -4.73 16 21 C 0.11 1.50 4.96 -3.40 -0.02 1.48 16 22 C -0.14 -1.81 3.27 -27.10 -0.09 -1.90 16 23 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.59 4.09 -51.93 -0.21 0.38 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 30 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 32 H 0.08 1.05 4.79 -51.93 -0.25 0.80 16 33 H 0.08 2.04 1.69 -51.93 -0.09 1.96 16 34 H 0.05 1.02 7.66 -51.93 -0.40 0.62 16 35 H 0.26 8.08 8.32 -40.82 -0.34 7.74 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.08 1.29 5.23 -51.93 -0.27 1.02 16 38 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 40 H 0.07 0.85 4.75 -51.92 -0.25 0.60 16 41 H 0.08 0.97 7.49 -51.93 -0.39 0.58 16 42 H 0.09 1.55 5.48 -51.93 -0.28 1.27 16 43 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -34.15 309.26 -6.79 -40.94 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.78 Total: 2.21 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.09 Total: -14.26 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.36 Total: -39.62 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.03 Total: 19.62 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.15 -6.79 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.106 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds