Wall clock time and date at job start Mon Mar 30 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 108.44543 * 2 1 4 4 C 1.51798 * 108.61588 * 117.86483 * 2 1 3 5 5 C 1.53060 * 110.74145 * 187.92754 * 4 2 1 6 6 C 1.51419 * 108.49765 * 275.08909 * 5 4 2 7 7 O 1.21286 * 119.88710 * 251.23295 * 6 5 4 8 8 N 1.33368 * 120.22293 * 71.20898 * 6 5 4 9 9 C 1.46491 * 119.78818 * 180.30697 * 8 6 5 10 10 C 1.53001 * 109.47079 * 93.69989 * 9 8 6 11 11 C 1.50701 * 115.56298 * 272.39189 * 10 9 8 12 12 H 1.08006 * 119.99740 * 140.22718 * 11 10 9 13 13 C 1.37875 * 119.99738 * 320.23295 * 11 10 9 14 14 N 1.31518 * 119.99525 * 169.15109 * 13 11 10 15 15 Si 1.86797 * 120.00178 * 349.14823 * 13 11 10 16 16 H 1.48491 * 109.47090 * 95.38661 * 15 13 11 17 17 H 1.48503 * 109.46785 * 215.38583 * 15 13 11 18 18 H 1.48497 * 109.47178 * 335.38009 * 15 13 11 19 19 C 1.53006 * 117.49783 * 58.08473 * 10 9 8 20 20 C 1.52999 * 60.03353 * 107.47668 * 19 10 9 21 21 C 1.47199 * 120.42467 * 0.58217 * 8 6 5 22 22 C 1.51771 * 108.61709 * 242.13076 * 2 1 3 23 23 H 1.08999 * 109.47121 * 297.38486 * 1 2 3 24 24 H 1.09001 * 109.47535 * 57.39008 * 1 2 3 25 25 H 1.09007 * 109.46885 * 177.38920 * 1 2 3 26 26 H 1.08997 * 109.47492 * 179.41862 * 3 2 1 27 27 H 1.08999 * 109.46803 * 299.42191 * 3 2 1 28 28 H 1.09003 * 109.46941 * 59.41676 * 3 2 1 29 29 H 1.08999 * 109.21642 * 67.60650 * 4 2 1 30 30 H 1.08994 * 109.18621 * 308.23580 * 4 2 1 31 31 H 1.08999 * 109.63127 * 155.38388 * 5 4 2 32 32 H 1.09001 * 109.79911 * 34.89080 * 5 4 2 33 33 H 1.08995 * 109.47687 * 333.69792 * 9 8 6 34 34 H 1.09004 * 109.47230 * 213.69601 * 9 8 6 35 35 H 0.97001 * 119.99913 * 185.01097 * 14 13 11 36 36 H 1.09004 * 117.49786 * 214.98276 * 19 10 9 37 37 H 1.08996 * 117.49822 * 359.97056 * 19 10 9 38 38 H 1.09004 * 117.49664 * 107.50068 * 20 19 10 39 39 H 1.09002 * 117.50022 * 252.52123 * 20 19 10 40 40 H 1.09007 * 109.60254 * 47.51840 * 21 8 6 41 41 H 1.08997 * 109.60848 * 168.01175 * 21 8 6 42 42 H 1.08994 * 109.20120 * 292.23590 * 22 2 1 43 43 H 1.09002 * 109.19934 * 51.56187 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0141 1.4515 0.0000 4 6 2.0146 -0.6724 1.2718 5 6 3.5311 -0.5264 1.4181 6 6 4.1984 -1.6386 0.6367 7 8 4.7463 -2.5464 1.2256 8 7 4.1853 -1.6236 -0.6968 9 6 4.8280 -2.7080 -1.4432 10 6 3.7901 -3.7807 -1.7792 11 6 3.5894 -4.8429 -0.7292 12 1 2.5959 -5.2070 -0.5124 13 6 4.6740 -5.3498 -0.0454 14 7 4.4880 -6.1126 1.0098 15 14 6.4074 -4.9534 -0.6175 16 1 6.9275 -3.7916 0.1472 17 1 7.2851 -6.1293 -0.3892 18 1 6.3876 -4.6243 -2.0654 19 6 2.5671 -3.3505 -2.5918 20 6 3.6579 -4.2015 -3.2451 21 6 3.5344 -0.5213 -1.4235 22 6 2.0145 -0.6723 -1.2715 23 1 -0.3633 0.4727 0.9125 24 1 -0.3634 0.5538 -0.8656 25 1 -0.3633 -1.0267 -0.0468 26 1 3.1038 1.4711 0.0104 27 1 1.6501 1.9558 -0.8951 28 1 1.6330 1.9615 0.8847 29 1 1.7575 -1.7311 1.2382 30 1 1.5251 -0.2113 2.1296 31 1 3.8065 -0.6016 2.4700 32 1 3.8488 0.4392 1.0246 33 1 5.6205 -3.1465 -0.8369 34 1 5.2530 -2.3121 -2.3656 35 1 5.2485 -6.4095 1.5337 36 1 1.6173 -3.8357 -2.3668 37 1 2.5017 -2.3032 -2.8865 38 1 3.4257 -5.2467 -3.4500 39 1 4.3104 -3.7140 -3.9694 40 1 3.8533 0.4325 -1.0030 41 1 3.8059 -0.5678 -2.4781 42 1 1.7598 -1.7315 -1.2363 43 1 1.5225 -0.2138 -2.1293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:54 Heat of formation + Delta-G solvation = -20.383326 kcal Electronic energy + Delta-G solvation = -22505.923185 eV Core-core repulsion = 19551.480191 eV Total energy + Delta-G solvation = -2954.442994 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.65963 -38.85709 -38.49012 -35.54426 -34.22685 -32.45758 -30.83073 -28.35896 -28.04587 -27.05082 -24.92644 -24.62357 -23.15489 -21.14524 -19.82278 -19.48249 -18.42527 -18.18162 -17.08435 -16.70759 -16.06799 -15.91411 -15.66266 -15.13532 -14.93658 -14.52465 -14.46366 -14.07960 -13.85265 -13.66663 -13.33158 -12.94104 -12.82218 -12.73019 -12.65969 -12.37329 -12.31367 -12.21337 -11.99353 -11.60525 -11.58686 -11.34202 -11.25374 -11.21098 -11.06673 -10.51695 -10.48930 -10.19812 -9.36435 -8.25329 -6.21582 1.26221 1.33322 1.41046 1.93232 2.28369 2.38728 3.01328 3.56222 3.64093 3.80170 3.84714 3.94749 4.11918 4.21416 4.28207 4.37935 4.40646 4.46962 4.54557 4.64515 4.67356 4.76259 4.83697 4.86892 4.93197 4.95117 4.97089 5.06725 5.10558 5.15566 5.20930 5.26460 5.31310 5.38074 5.48622 5.53346 5.54493 5.72821 5.76357 5.83432 6.30713 6.69559 6.78444 7.41423 7.55779 8.90530 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.008497 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.362039 B = 3294.611894 C = 3656.957622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.096 4.096 5 C -0.129 4.129 6 C 0.490 3.510 7 O -0.586 6.586 8 N -0.594 5.594 9 C 0.133 3.867 10 C -0.033 4.033 11 C -0.482 4.482 12 H 0.015 0.985 13 C 0.043 3.957 14 N -0.945 5.945 15 Si 0.949 3.051 16 H -0.284 1.284 17 H -0.311 1.311 18 H -0.230 1.230 19 C -0.158 4.158 20 C -0.197 4.197 21 C 0.099 3.901 22 C -0.139 4.139 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.023 0.977 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.258 0.742 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.054 0.946 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 20.992 -7.468 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.203 4.203 4 C -0.134 4.134 5 C -0.169 4.169 6 C 0.279 3.721 7 O -0.466 6.466 8 N -0.326 5.326 9 C 0.010 3.990 10 C -0.035 4.035 11 C -0.519 4.519 12 H 0.033 0.967 13 C -0.155 4.155 14 N -0.585 5.585 15 Si 0.778 3.222 16 H -0.213 1.213 17 H -0.240 1.240 18 H -0.153 1.153 19 C -0.195 4.195 20 C -0.235 4.235 21 C -0.021 4.021 22 C -0.177 4.177 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.144 0.856 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.248 20.382 -7.087 21.993 hybrid contribution 0.602 -1.197 0.649 1.489 sum -3.646 19.185 -6.438 20.562 Atomic orbital electron populations 1.21905 0.93928 1.00973 1.02772 1.20098 0.96242 0.96748 0.93149 1.22137 1.01452 0.93458 1.03222 1.21246 0.92882 0.99654 0.99627 1.22089 0.96724 0.97840 1.00231 1.21345 0.79691 0.87798 0.83260 1.90788 1.46838 1.38981 1.70013 1.47792 1.55703 1.23596 1.05480 1.21446 0.94350 0.87763 0.95410 1.19596 0.97647 0.95998 0.90245 1.20329 0.92208 1.19929 1.19435 0.96669 1.25573 1.02978 0.93305 0.93678 1.70013 1.31974 1.38562 1.17905 0.85912 0.80225 0.75363 0.80656 1.21252 1.23991 1.15254 1.22876 0.92324 0.99785 1.04526 1.23245 1.03692 0.99406 0.97181 1.22434 0.92414 0.89150 0.98139 1.22190 0.95422 1.01596 0.98468 0.91895 0.90779 0.94840 0.91578 0.90648 0.91743 0.95803 0.89270 0.89946 0.85645 0.93521 0.88747 0.93304 0.92127 0.86374 0.91283 0.87770 0.87677 0.88034 0.92686 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.25 71.98 0.59 -1.94 16 2 C -0.06 -1.24 0.70 -52.98 -0.04 -1.28 16 3 C -0.15 -1.89 7.42 71.98 0.53 -1.36 16 4 C -0.10 -2.60 4.46 30.22 0.13 -2.46 16 5 C -0.13 -3.78 5.46 30.10 0.16 -3.62 16 6 C 0.49 20.56 6.79 88.10 0.60 21.15 16 7 O -0.59 -32.83 15.22 -3.05 -0.05 -32.87 16 8 N -0.59 -21.50 2.37 -820.17 -1.95 -23.45 16 9 C 0.13 5.59 4.28 86.38 0.37 5.96 16 10 C -0.03 -1.54 1.39 -52.90 -0.07 -1.61 16 11 C -0.48 -29.53 9.55 25.60 0.24 -29.28 16 12 H 0.01 1.05 8.06 -2.91 -0.02 1.02 16 13 C 0.04 2.73 4.75 84.65 0.40 3.13 16 14 N -0.94 -65.38 13.95 21.45 0.30 -65.08 16 15 Si 0.95 50.89 23.69 68.60 1.63 52.51 16 16 H -0.28 -15.73 6.81 99.48 0.68 -15.06 16 17 H -0.31 -16.68 7.11 99.48 0.71 -15.98 16 18 H -0.23 -10.64 6.70 99.48 0.67 -9.97 16 19 C -0.16 -5.93 7.55 30.60 0.23 -5.70 16 20 C -0.20 -7.71 9.88 30.62 0.30 -7.41 16 21 C 0.10 2.24 4.96 86.41 0.43 2.67 16 22 C -0.14 -3.06 3.27 30.36 0.10 -2.97 16 23 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.07 0.81 4.09 -2.39 -0.01 0.80 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.02 0.87 7.86 -2.39 -0.02 0.85 16 30 H 0.09 1.99 8.05 -2.39 -0.02 1.98 16 31 H 0.08 2.50 8.13 -2.39 -0.02 2.48 16 32 H 0.13 2.60 4.79 -2.39 -0.01 2.59 16 33 H 0.05 2.33 1.69 -2.39 0.00 2.33 16 34 H 0.09 3.16 7.66 -2.39 -0.02 3.14 16 35 H 0.26 17.11 8.32 -92.71 -0.77 16.34 16 36 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.12 3.42 5.23 -2.39 -0.01 3.41 16 38 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 39 H 0.10 3.32 8.04 -2.39 -0.02 3.30 16 40 H 0.11 1.76 4.75 -2.38 -0.01 1.75 16 41 H 0.10 1.84 7.49 -2.39 -0.02 1.82 16 42 H 0.05 1.70 5.48 -2.39 -0.01 1.68 16 43 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -84.83 309.26 4.85 -79.98 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.93 Total: 13.62 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.99 Total: -24.71 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -1.65 Total: -88.52 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.05 Total: -32.87 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 1.63 Total: 52.51 kcal Total: -84.83 4.85 -79.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.597 kcal (2) G-P(sol) polarization free energy of solvation -84.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds