Wall clock time and date at job start Mon Mar 30 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47189 * 2 1 4 4 C 1.50690 * 110.43774 * 295.80659 * 3 2 1 5 5 O 1.21285 * 120.00374 * 123.18114 * 4 3 2 6 6 N 1.34776 * 120.00478 * 303.18054 * 4 3 2 7 7 C 1.46497 * 120.00583 * 175.52379 * 6 4 3 8 8 C 1.50702 * 109.47027 * 89.99802 * 7 6 4 9 9 H 1.08007 * 119.99885 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00089 * 179.72520 * 8 7 6 11 11 N 1.31512 * 119.99699 * 0.27446 * 10 8 7 12 12 Si 1.86797 * 120.00181 * 180.27669 * 10 8 7 13 13 H 1.48501 * 109.46841 * 60.00024 * 12 10 8 14 14 H 1.48495 * 109.47109 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47171 * 300.00293 * 12 10 8 16 16 C 1.46506 * 119.99289 * 355.52309 * 6 4 3 17 17 C 1.53002 * 117.49412 * 193.97164 * 16 6 4 18 18 C 1.53000 * 117.49553 * 125.31281 * 16 6 4 19 19 C 1.54893 * 110.59638 * 58.42649 * 3 2 1 20 20 C 1.54886 * 102.75224 * 156.67270 * 19 3 2 21 21 C 1.54273 * 104.19576 * 322.05944 * 20 19 3 22 22 C 1.53881 * 106.59644 * 23.60605 * 21 20 19 23 23 H 1.09001 * 109.47161 * 304.97269 * 1 2 3 24 24 H 1.08998 * 109.47086 * 64.97752 * 1 2 3 25 25 H 1.09002 * 109.47136 * 184.97662 * 1 2 3 26 26 H 1.09005 * 109.47122 * 240.00775 * 2 1 3 27 27 H 1.08994 * 109.47306 * 120.00559 * 2 1 3 28 28 H 1.08996 * 109.47041 * 329.99970 * 7 6 4 29 29 H 1.08998 * 109.47205 * 209.99837 * 7 6 4 30 30 H 0.97005 * 119.99859 * 179.97438 * 11 10 8 31 31 H 1.08998 * 115.55182 * 339.63906 * 16 6 4 32 32 H 1.08999 * 117.50185 * 359.97438 * 17 16 6 33 33 H 1.09004 * 117.49699 * 145.02341 * 17 16 6 34 34 H 1.08998 * 117.49739 * 214.97131 * 18 16 6 35 35 H 1.08997 * 117.50398 * 359.97438 * 18 16 6 36 36 H 1.09005 * 110.75437 * 274.99322 * 19 3 2 37 37 H 1.09006 * 110.75513 * 38.35812 * 19 3 2 38 38 H 1.08992 * 110.48791 * 203.37886 * 20 19 3 39 39 H 1.09007 * 110.48413 * 80.73072 * 20 19 3 40 40 H 1.08996 * 110.02654 * 264.32240 * 21 20 19 41 41 H 1.08992 * 110.03227 * 142.88932 * 21 20 19 42 42 H 1.09002 * 110.02966 * 240.71600 * 22 21 20 43 43 H 1.08999 * 110.02840 * 119.28589 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6359 2.1435 -1.2712 5 8 0.9890 3.1682 -1.2195 6 7 1.9932 1.6319 -2.4658 7 6 1.5183 2.2578 -3.7024 8 6 2.5024 3.3109 -4.1424 9 1 3.3927 3.4953 -3.5594 10 6 2.2692 4.0348 -5.2925 11 7 1.1853 3.8099 -6.0025 12 14 3.4928 5.3348 -5.8421 13 1 4.8150 4.7015 -6.0786 14 1 3.0138 5.9659 -7.0980 15 1 3.6221 6.3708 -4.7861 16 6 2.8565 0.4499 -2.5277 17 6 3.4924 0.1096 -3.8771 18 6 2.3521 -0.7521 -3.3288 19 6 1.5059 2.2093 1.2353 20 6 2.5422 3.3477 1.4054 21 6 3.8924 2.6845 1.0631 22 6 3.5730 1.4731 0.1695 23 1 -0.3633 0.5890 0.8421 24 1 -0.3633 0.4347 -0.9312 25 1 -0.3633 -1.0238 0.0892 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.5468 2.7193 -3.5261 29 1 1.4248 1.5001 -4.4804 30 1 1.0211 4.3194 -6.8115 31 1 3.4411 0.2472 -1.6304 32 1 3.2681 0.7648 -4.7188 33 1 4.4953 -0.3175 -3.8674 34 1 2.6053 -1.7455 -2.9587 35 1 1.3778 -0.6636 -3.8094 36 1 0.5140 2.6160 1.0383 37 1 1.4926 1.5645 2.1141 38 1 2.5452 3.7105 2.4332 39 1 2.3310 4.1625 0.7128 40 1 4.3884 2.3548 1.9759 41 1 4.5281 3.3878 0.5253 42 1 3.9141 0.5554 0.6488 43 1 4.0538 1.5886 -0.8018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094901747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:51 Heat of formation + Delta-G solvation = -20.979493 kcal Electronic energy + Delta-G solvation = -22009.537178 eV Core-core repulsion = 19055.068332 eV Total energy + Delta-G solvation = -2954.468846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34740 -37.35945 -36.33040 -33.18200 -33.08323 -31.84003 -28.95191 -27.83715 -26.86105 -23.29353 -22.71372 -22.42568 -21.79721 -20.27868 -19.95660 -18.02775 -16.38890 -16.11924 -15.56700 -15.16599 -14.90910 -14.41951 -14.12784 -13.94847 -13.34062 -13.26368 -12.86127 -12.74666 -12.19552 -11.92338 -11.82448 -11.35605 -11.18475 -11.08971 -11.03384 -10.93874 -10.74598 -10.72908 -10.61229 -10.49955 -10.35898 -10.20191 -10.09766 -10.05700 -9.89603 -9.46527 -8.64678 -8.40929 -7.44480 -6.01537 -4.05488 3.32947 3.37424 3.39048 3.44311 3.89557 4.40699 4.49572 4.66286 4.80370 4.86156 5.20233 5.29787 5.31326 5.34511 5.38634 5.40889 5.51325 5.57004 5.64234 5.76828 5.88095 5.89636 5.99974 6.02401 6.05662 6.10249 6.11617 6.15933 6.27300 6.37472 6.43329 6.46711 6.48469 6.53199 6.70120 6.81353 7.11308 7.46097 7.59974 7.95166 8.26740 8.50687 8.94576 9.18144 9.59163 11.06184 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.007415 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.384801 B = 3774.969146 C = 4312.360234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.084 4.084 4 C 0.527 3.473 5 O -0.536 6.536 6 N -0.569 5.569 7 C 0.246 3.754 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.070 3.930 17 C -0.180 4.180 18 C -0.205 4.205 19 C -0.098 4.098 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.120 4.120 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -9.783 12.163 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.087 4.087 4 C 0.314 3.686 5 O -0.413 6.413 6 N -0.298 5.298 7 C 0.127 3.873 8 C -0.557 4.557 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.036 4.036 17 C -0.218 4.218 18 C -0.244 4.244 19 C -0.135 4.135 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.158 4.158 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.507 -9.141 11.996 15.484 hybrid contribution 0.734 0.682 -0.544 1.140 sum 4.240 -8.459 11.451 14.855 Atomic orbital electron populations 1.21772 0.95599 1.01098 1.02434 1.21810 0.96611 0.94289 1.02836 1.21679 0.96201 0.96063 0.94745 1.19946 0.79911 0.84575 0.84182 1.90646 1.40339 1.23612 1.86654 1.47661 1.47555 1.26973 1.07619 1.19243 0.95960 0.92606 0.79469 1.21356 1.06983 1.19288 1.08029 0.92550 1.24919 0.95580 0.97138 0.96483 1.69923 1.25756 1.41512 1.16353 0.86599 0.81248 0.81958 0.77871 1.20278 1.21246 1.20244 1.21834 0.97653 0.87656 0.96455 1.23407 0.96563 1.02839 0.98947 1.23405 0.99895 0.95180 1.05883 1.22364 0.99805 0.96238 0.95143 1.22360 0.94224 0.98765 1.00906 1.22111 0.97903 0.97083 0.98891 1.22410 0.93907 0.98693 1.00771 0.92566 0.92514 0.92972 0.90096 0.91720 0.94163 0.94940 0.92747 0.85556 0.86290 0.89141 0.89111 0.88714 0.90451 0.91613 0.92220 0.90617 0.92177 0.91919 0.91206 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.49 37.16 0.35 -1.69 16 2 C -0.12 -1.53 4.61 -26.73 -0.12 -1.66 16 3 C -0.08 -1.29 0.27 -154.00 -0.04 -1.33 16 4 C 0.53 11.02 5.35 -10.99 -0.06 10.96 16 5 O -0.54 -13.53 14.66 5.55 0.08 -13.45 16 6 N -0.57 -12.08 2.80 -167.47 -0.47 -12.55 16 7 C 0.25 6.41 4.39 -5.19 -0.02 6.39 16 8 C -0.52 -14.61 8.89 -34.44 -0.31 -14.91 16 9 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 12 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 C 0.07 1.17 3.62 -67.93 -0.25 0.93 16 17 C -0.18 -2.99 9.73 -26.69 -0.26 -3.25 16 18 C -0.20 -3.06 9.32 -26.69 -0.25 -3.31 16 19 C -0.10 -1.43 4.31 -24.74 -0.11 -1.53 16 20 C -0.13 -1.83 6.52 -25.07 -0.16 -1.99 16 21 C -0.12 -1.63 6.80 -25.61 -0.17 -1.81 16 22 C -0.12 -1.65 4.58 -25.61 -0.12 -1.76 16 23 H 0.06 0.73 6.87 -51.93 -0.36 0.37 16 24 H 0.06 0.92 7.57 -51.93 -0.39 0.52 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.06 4.47 -51.93 -0.23 0.82 16 27 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 28 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 29 H 0.03 0.86 6.25 -51.93 -0.32 0.53 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.13 1.81 4.14 -51.93 -0.21 1.60 16 32 H 0.12 2.43 6.29 -51.93 -0.33 2.10 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.57 7.81 -51.93 -0.41 1.16 16 36 H 0.08 1.27 7.17 -51.93 -0.37 0.90 16 37 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.77 7.77 -51.93 -0.40 0.36 16 43 H 0.08 1.16 5.91 -51.93 -0.31 0.85 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -31.55 325.34 -8.42 -39.97 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.04 Total: 3.33 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.61 Total: -13.34 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.27 Total: -38.45 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.55 -8.42 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.989 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds