Wall clock time and date at job start Mon Mar 30 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47189 * 2 1 4 4 C 1.50690 * 110.43774 * 295.80659 * 3 2 1 5 5 O 1.21285 * 120.00374 * 123.18114 * 4 3 2 6 6 N 1.34776 * 120.00478 * 303.18054 * 4 3 2 7 7 C 1.46497 * 120.00583 * 175.52379 * 6 4 3 8 8 C 1.50702 * 109.47027 * 89.99802 * 7 6 4 9 9 H 1.08007 * 119.99885 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00089 * 179.72520 * 8 7 6 11 11 N 1.31512 * 119.99699 * 0.27446 * 10 8 7 12 12 Si 1.86797 * 120.00181 * 180.27669 * 10 8 7 13 13 H 1.48501 * 109.46841 * 60.00024 * 12 10 8 14 14 H 1.48495 * 109.47109 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47171 * 300.00293 * 12 10 8 16 16 C 1.46506 * 119.99289 * 355.52309 * 6 4 3 17 17 C 1.53002 * 117.49412 * 193.97164 * 16 6 4 18 18 C 1.53000 * 117.49553 * 125.31281 * 16 6 4 19 19 C 1.54893 * 110.59638 * 58.42649 * 3 2 1 20 20 C 1.54886 * 102.75224 * 156.67270 * 19 3 2 21 21 C 1.54273 * 104.19576 * 322.05944 * 20 19 3 22 22 C 1.53881 * 106.59644 * 23.60605 * 21 20 19 23 23 H 1.09001 * 109.47161 * 304.97269 * 1 2 3 24 24 H 1.08998 * 109.47086 * 64.97752 * 1 2 3 25 25 H 1.09002 * 109.47136 * 184.97662 * 1 2 3 26 26 H 1.09005 * 109.47122 * 240.00775 * 2 1 3 27 27 H 1.08994 * 109.47306 * 120.00559 * 2 1 3 28 28 H 1.08996 * 109.47041 * 329.99970 * 7 6 4 29 29 H 1.08998 * 109.47205 * 209.99837 * 7 6 4 30 30 H 0.97005 * 119.99859 * 179.97438 * 11 10 8 31 31 H 1.08998 * 115.55182 * 339.63906 * 16 6 4 32 32 H 1.08999 * 117.50185 * 359.97438 * 17 16 6 33 33 H 1.09004 * 117.49699 * 145.02341 * 17 16 6 34 34 H 1.08998 * 117.49739 * 214.97131 * 18 16 6 35 35 H 1.08997 * 117.50398 * 359.97438 * 18 16 6 36 36 H 1.09005 * 110.75437 * 274.99322 * 19 3 2 37 37 H 1.09006 * 110.75513 * 38.35812 * 19 3 2 38 38 H 1.08992 * 110.48791 * 203.37886 * 20 19 3 39 39 H 1.09007 * 110.48413 * 80.73072 * 20 19 3 40 40 H 1.08996 * 110.02654 * 264.32240 * 21 20 19 41 41 H 1.08992 * 110.03227 * 142.88932 * 21 20 19 42 42 H 1.09002 * 110.02966 * 240.71600 * 22 21 20 43 43 H 1.08999 * 110.02840 * 119.28589 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6359 2.1435 -1.2712 5 8 0.9890 3.1682 -1.2195 6 7 1.9932 1.6319 -2.4658 7 6 1.5183 2.2578 -3.7024 8 6 2.5024 3.3109 -4.1424 9 1 3.3927 3.4953 -3.5594 10 6 2.2692 4.0348 -5.2925 11 7 1.1853 3.8099 -6.0025 12 14 3.4928 5.3348 -5.8421 13 1 4.8150 4.7015 -6.0786 14 1 3.0138 5.9659 -7.0980 15 1 3.6221 6.3708 -4.7861 16 6 2.8565 0.4499 -2.5277 17 6 3.4924 0.1096 -3.8771 18 6 2.3521 -0.7521 -3.3288 19 6 1.5059 2.2093 1.2353 20 6 2.5422 3.3477 1.4054 21 6 3.8924 2.6845 1.0631 22 6 3.5730 1.4731 0.1695 23 1 -0.3633 0.5890 0.8421 24 1 -0.3633 0.4347 -0.9312 25 1 -0.3633 -1.0238 0.0892 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.5468 2.7193 -3.5261 29 1 1.4248 1.5001 -4.4804 30 1 1.0211 4.3194 -6.8115 31 1 3.4411 0.2472 -1.6304 32 1 3.2681 0.7648 -4.7188 33 1 4.4953 -0.3175 -3.8674 34 1 2.6053 -1.7455 -2.9587 35 1 1.3778 -0.6636 -3.8094 36 1 0.5140 2.6160 1.0383 37 1 1.4926 1.5645 2.1141 38 1 2.5452 3.7105 2.4332 39 1 2.3310 4.1625 0.7128 40 1 4.3884 2.3548 1.9759 41 1 4.5281 3.3878 0.5253 42 1 3.9141 0.5554 0.6488 43 1 4.0538 1.5886 -0.8018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094901747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:50 Heat of formation + Delta-G solvation = -40.096944 kcal Electronic energy + Delta-G solvation = -22010.366172 eV Core-core repulsion = 19055.068332 eV Total energy + Delta-G solvation = -2955.297841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.77785 -38.73281 -37.89670 -35.22152 -34.24022 -33.60290 -30.35486 -29.24191 -28.43819 -25.28375 -23.94361 -23.76305 -23.06651 -21.61854 -21.21089 -19.54923 -18.60580 -17.49391 -17.18419 -16.60572 -16.41522 -15.93011 -15.51188 -15.38282 -14.79075 -14.57536 -14.43049 -13.92332 -13.79544 -13.46421 -13.37419 -12.94993 -12.88723 -12.64338 -12.37318 -12.34005 -12.23687 -12.19738 -12.01944 -11.97394 -11.84217 -11.55542 -11.47479 -11.32617 -11.19568 -11.13071 -10.66826 -10.27367 -9.18888 -8.23201 -6.37672 1.31580 1.36076 1.43274 1.85072 2.25486 2.41357 3.04695 3.11031 3.51596 3.58876 3.71108 3.94697 4.05776 4.09149 4.18618 4.28518 4.40759 4.44178 4.59085 4.66216 4.75148 4.81430 4.85595 4.87735 4.95088 4.99299 5.03513 5.08046 5.08822 5.11441 5.20715 5.25066 5.30000 5.34137 5.37255 5.42676 5.46657 5.55848 5.57996 5.85800 6.05384 6.69028 6.86379 7.27719 7.54850 8.82787 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.007415 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.384801 B = 3774.969146 C = 4312.360234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.078 4.078 4 C 0.515 3.485 5 O -0.597 6.597 6 N -0.576 5.576 7 C 0.267 3.733 8 C -0.529 4.529 9 H 0.048 0.952 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.963 3.037 13 H -0.259 1.259 14 H -0.277 1.277 15 H -0.280 1.280 16 C 0.056 3.944 17 C -0.190 4.190 18 C -0.181 4.181 19 C -0.095 4.095 20 C -0.129 4.129 21 C -0.120 4.120 22 C -0.119 4.119 23 H 0.057 0.943 24 H 0.012 0.988 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.110 0.890 28 H -0.014 1.014 29 H 0.022 0.978 30 H 0.266 0.734 31 H 0.164 0.836 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.098 0.902 41 H 0.045 0.955 42 H 0.118 0.882 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.655 -12.421 14.537 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.081 4.081 4 C 0.305 3.695 5 O -0.478 6.478 6 N -0.304 5.304 7 C 0.146 3.854 8 C -0.567 4.567 9 H 0.066 0.934 10 C -0.191 4.191 11 N -0.569 5.569 12 Si 0.787 3.213 13 H -0.183 1.183 14 H -0.202 1.202 15 H -0.206 1.206 16 C -0.048 4.048 17 C -0.227 4.227 18 C -0.219 4.219 19 C -0.133 4.133 20 C -0.166 4.166 21 C -0.158 4.158 22 C -0.156 4.156 23 H 0.076 0.924 24 H 0.031 0.969 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.005 0.995 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.181 0.819 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.117 0.883 41 H 0.063 0.937 42 H 0.136 0.864 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.218 -11.826 14.372 19.623 hybrid contribution -0.184 1.519 -1.296 2.005 sum 6.034 -10.307 13.075 17.709 Atomic orbital electron populations 1.21777 0.96572 1.02347 1.00187 1.21880 0.95736 0.92377 1.05103 1.21727 0.98017 0.97118 0.91215 1.21169 0.78509 0.84026 0.85775 1.90606 1.42966 1.26580 1.87658 1.47634 1.48221 1.28351 1.06228 1.18594 0.93309 0.91983 0.81534 1.21544 1.06925 1.20087 1.08178 0.93405 1.25825 0.97490 0.99309 0.96526 1.70047 1.27476 1.42623 1.16788 0.85539 0.79473 0.78871 0.77392 1.18347 1.20205 1.20604 1.22307 0.97853 0.86604 0.98057 1.23377 0.99108 1.03120 0.97118 1.23457 0.98025 0.96567 1.03850 1.22404 0.97988 0.96661 0.96202 1.22355 0.95476 0.97682 1.01131 1.22137 0.96726 0.96561 1.00328 1.22487 0.91686 1.00997 1.00439 0.92391 0.96899 0.90286 0.89848 0.87139 0.99546 0.95993 0.92488 0.81905 0.90980 0.85480 0.84248 0.91236 0.93621 0.87391 0.89623 0.95540 0.88311 0.93655 0.86420 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.49 71.98 0.68 -3.15 16 2 C -0.11 -2.52 4.61 30.59 0.14 -2.38 16 3 C -0.08 -2.26 0.27 -51.86 -0.01 -2.27 16 4 C 0.52 22.52 5.35 87.65 0.47 22.99 16 5 O -0.60 -32.80 14.66 -3.04 -0.04 -32.85 16 6 N -0.58 -25.57 2.80 -802.15 -2.24 -27.81 16 7 C 0.27 15.03 4.39 85.63 0.38 15.41 16 8 C -0.53 -31.53 8.89 25.60 0.23 -31.31 16 9 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 10 C 0.01 0.42 5.46 84.66 0.46 0.89 16 11 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 12 Si 0.96 46.46 29.54 68.60 2.03 48.49 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 16 C 0.06 1.80 3.62 44.99 0.16 1.96 16 17 C -0.19 -6.14 9.73 30.62 0.30 -5.85 16 18 C -0.18 -5.06 9.32 30.62 0.29 -4.77 16 19 C -0.09 -2.62 4.31 31.89 0.14 -2.48 16 20 C -0.13 -3.66 6.52 31.67 0.21 -3.45 16 21 C -0.12 -2.86 6.80 31.32 0.21 -2.65 16 22 C -0.12 -2.81 4.58 31.32 0.14 -2.66 16 23 H 0.06 1.42 6.87 -2.39 -0.02 1.40 16 24 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.82 4.47 -2.38 -0.01 1.81 16 27 H 0.11 1.56 8.04 -2.39 -0.02 1.54 16 28 H -0.01 -0.89 7.49 -2.39 -0.02 -0.91 16 29 H 0.02 1.26 6.25 -2.39 -0.01 1.25 16 30 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 31 H 0.16 4.06 4.14 -2.39 -0.01 4.05 16 32 H 0.07 3.06 6.29 -2.39 -0.02 3.05 16 33 H 0.13 3.14 8.14 -2.38 -0.02 3.12 16 34 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 2.32 7.81 -2.39 -0.02 2.30 16 36 H 0.04 1.55 7.17 -2.38 -0.02 1.53 16 37 H 0.11 2.09 8.06 -2.38 -0.02 2.07 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.03 0.99 7.58 -2.38 -0.02 0.97 16 40 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.12 1.73 7.77 -2.39 -0.02 1.72 16 43 H 0.06 1.60 5.91 -2.39 -0.01 1.59 16 Total: -1.00 -77.95 325.34 4.80 -73.15 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.98 Total: 16.36 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 3.79 Total: -19.74 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.96 Total: -85.42 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.04 Total: -32.85 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -77.95 4.80 -73.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.055 kcal (2) G-P(sol) polarization free energy of solvation -77.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds