Wall clock time and date at job start Mon Mar 30 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47356 * 2 1 4 4 C 1.53006 * 109.46938 * 240.00340 * 2 1 3 5 5 C 1.52995 * 109.47454 * 120.00672 * 2 1 3 6 6 H 1.09002 * 110.88472 * 300.78212 * 5 2 1 7 7 C 1.54627 * 110.96967 * 64.59098 * 5 2 1 8 8 C 1.51287 * 104.31285 * 142.85635 * 7 5 2 9 9 O 1.21279 * 124.93963 * 163.79297 * 8 7 5 10 10 N 1.34648 * 109.98193 * 343.90444 * 8 7 5 11 11 C 1.46500 * 124.31505 * 179.52367 * 10 8 7 12 12 C 1.52997 * 109.47219 * 264.35363 * 11 10 8 13 13 C 1.50705 * 115.54925 * 279.32325 * 12 11 10 14 14 H 1.07998 * 120.00114 * 144.01223 * 13 12 11 15 15 C 1.37876 * 119.99964 * 324.02654 * 13 12 11 16 16 N 1.31515 * 119.99750 * 338.90830 * 15 13 12 17 17 Si 1.86797 * 120.00171 * 158.91366 * 15 13 12 18 18 H 1.48507 * 109.47003 * 59.99886 * 17 15 13 19 19 H 1.48497 * 109.47078 * 179.97438 * 17 15 13 20 20 H 1.48489 * 109.47199 * 299.99752 * 17 15 13 21 21 C 1.52999 * 117.50120 * 133.62418 * 12 11 10 22 22 C 1.52996 * 117.50323 * 64.99831 * 12 11 10 23 23 C 1.46764 * 111.34169 * 359.42010 * 10 8 7 24 24 H 1.08999 * 109.46646 * 299.99426 * 1 2 3 25 25 H 1.08996 * 109.47470 * 59.99254 * 1 2 3 26 26 H 1.08992 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47413 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47440 * 300.00764 * 3 2 1 29 29 H 1.08999 * 109.46775 * 60.00653 * 3 2 1 30 30 H 1.09000 * 109.47212 * 293.89216 * 4 2 1 31 31 H 1.08999 * 109.47057 * 53.89213 * 4 2 1 32 32 H 1.08994 * 109.47206 * 173.88957 * 4 2 1 33 33 H 1.09007 * 110.48701 * 261.59465 * 7 5 2 34 34 H 1.08996 * 110.48846 * 24.10406 * 7 5 2 35 35 H 1.09005 * 109.46923 * 24.34911 * 11 10 8 36 36 H 1.08994 * 109.47678 * 144.34393 * 11 10 8 37 37 H 0.97001 * 119.99917 * 185.03118 * 16 15 13 38 38 H 1.08998 * 117.50287 * 359.97438 * 21 12 11 39 39 H 1.09006 * 117.50175 * 145.01935 * 21 12 11 40 40 H 1.09001 * 117.49879 * 214.98015 * 22 12 11 41 41 H 1.09001 * 117.49896 * 0.02562 * 22 12 11 42 42 H 1.09005 * 110.24446 * 258.13016 * 23 10 8 43 43 H 1.08995 * 110.32622 * 136.16320 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 1 1.6782 -0.2338 2.1544 7 6 1.6404 -2.2149 1.2275 8 6 2.8305 -2.9292 1.8294 9 8 2.8187 -4.0676 2.2477 10 7 3.9023 -2.1142 1.8342 11 6 5.2196 -2.4851 2.3569 12 6 5.3510 -1.9975 3.8012 13 6 5.7053 -0.5421 3.9662 14 1 5.2851 0.0268 4.7824 15 6 6.5656 0.0633 3.0749 16 7 7.3885 -0.6679 2.3554 17 14 6.5626 1.9221 2.8897 18 1 6.8963 2.5500 4.1934 19 1 7.5724 2.3201 1.8762 20 1 5.2173 2.3738 2.4526 21 6 5.9087 -2.9819 4.8311 22 6 4.4219 -2.6211 4.8446 23 6 3.5825 -0.8079 1.2465 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.7686 -1.7756 -1.1964 31 1 1.5901 -0.2743 -2.1359 32 1 3.1244 -0.6275 -1.3058 33 1 0.7497 -2.3804 1.8337 34 1 1.4719 -2.5500 0.2041 35 1 5.3299 -3.5691 2.3280 36 1 5.9959 -2.0246 1.7459 37 1 8.0436 -0.2394 1.7826 38 1 6.1817 -3.9770 4.4800 39 1 6.5321 -2.5769 5.6284 40 1 4.0672 -1.9787 5.6506 41 1 3.7173 -3.3791 4.5023 42 1 3.9617 -0.7502 0.2262 43 1 4.0062 -0.0065 1.8518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166940024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:33 Heat of formation + Delta-G solvation = -21.518532 kcal Electronic energy + Delta-G solvation = -21858.383758 eV Core-core repulsion = 18903.891538 eV Total energy + Delta-G solvation = -2954.492220 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.20411 -37.54326 -36.43964 -34.48365 -32.27597 -30.69497 -27.93662 -27.32004 -26.25354 -25.95479 -25.14670 -22.07664 -21.05110 -19.49853 -18.52228 -18.28709 -16.43962 -16.17487 -15.53695 -14.86834 -14.54836 -14.16821 -14.01525 -13.97356 -13.42096 -13.25273 -12.97134 -12.83910 -12.22194 -12.17100 -11.83945 -11.75462 -11.58403 -11.36731 -11.26752 -11.06230 -10.98645 -10.69117 -10.56013 -10.41391 -10.31246 -10.19161 -10.16102 -9.65574 -9.13575 -9.05454 -8.70604 -8.06562 -7.66539 -6.19006 -4.12459 3.17702 3.25869 3.28150 3.29878 3.94014 4.27197 4.64738 4.67288 4.80476 4.90449 5.13751 5.23678 5.36013 5.46847 5.59403 5.61148 5.66964 5.75349 5.78337 5.88845 5.93834 6.00522 6.05859 6.16422 6.19649 6.24357 6.28434 6.39359 6.41604 6.52151 6.57977 6.59207 6.76123 6.84205 7.04033 7.13779 7.33374 7.42820 7.61656 7.84617 8.10833 8.42669 8.79605 8.98119 9.40576 10.84526 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.009079 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.497468 B = 3083.270169 C = 4294.656344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.151 4.151 5 C -0.091 4.091 6 H 0.088 0.912 7 C -0.155 4.155 8 C 0.507 3.493 9 O -0.555 6.555 10 N -0.586 5.586 11 C 0.147 3.853 12 C 0.038 3.962 13 C -0.487 4.487 14 H 0.060 0.940 15 C 0.074 3.926 16 N -0.872 5.872 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.197 4.197 22 C -0.206 4.206 23 C 0.107 3.893 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.123 0.877 37 H 0.265 0.735 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.247 3.507 -7.380 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 C -0.201 4.201 4 C -0.208 4.208 5 C -0.110 4.110 6 H 0.107 0.893 7 C -0.195 4.195 8 C 0.294 3.706 9 O -0.435 6.435 10 N -0.316 5.316 11 C 0.027 3.973 12 C 0.037 3.963 13 C -0.524 4.524 14 H 0.078 0.922 15 C -0.129 4.129 16 N -0.509 5.509 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.235 4.235 22 C -0.243 4.243 23 C -0.016 4.016 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.141 0.859 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.025 2.930 -7.341 12.766 hybrid contribution 0.147 1.044 0.134 1.063 sum -9.878 3.975 -7.208 12.857 Atomic orbital electron populations 1.21864 0.94470 1.01812 1.01555 1.20435 0.95457 0.95477 0.94350 1.21898 1.01718 0.94976 1.01551 1.22090 1.01669 1.00398 0.96594 1.22211 0.95686 0.94532 0.98584 0.89344 1.22523 0.98298 0.95674 1.03007 1.20825 0.85406 0.85779 0.78602 1.90637 1.84588 1.18067 1.50198 1.48318 1.11428 1.13734 1.58115 1.21372 0.81994 0.97680 0.96238 1.19303 0.96652 0.93079 0.87314 1.20466 1.27682 0.92525 1.11697 0.92202 1.24924 0.94566 0.97849 0.95544 1.69848 1.17421 1.35222 1.28436 0.86868 0.78168 0.86154 0.78278 1.20183 1.21114 1.19650 1.22942 0.95052 0.99826 1.05702 1.22847 0.92783 1.04230 1.04442 1.22193 0.93645 0.87223 0.98554 0.92609 0.92823 0.92510 0.92091 0.92812 0.92483 0.92180 0.92754 0.91928 0.89143 0.88176 0.93196 0.85933 0.92487 0.91783 0.90508 0.91212 0.90727 0.91780 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.30 37.16 0.31 -1.03 16 2 C -0.06 -0.64 0.59 -154.51 -0.09 -0.73 16 3 C -0.14 -1.63 8.29 37.16 0.31 -1.33 16 4 C -0.15 -1.64 7.87 37.16 0.29 -1.35 16 5 C -0.09 -1.29 2.51 -88.99 -0.22 -1.51 16 6 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 7 C -0.16 -2.30 5.30 -26.74 -0.14 -2.45 16 8 C 0.51 10.24 7.90 -10.75 -0.08 10.15 16 9 O -0.55 -13.15 16.73 5.56 0.09 -13.06 16 10 N -0.59 -12.12 2.90 -172.34 -0.50 -12.62 16 11 C 0.15 3.50 5.65 -4.04 -0.02 3.47 16 12 C 0.04 0.94 1.94 -155.66 -0.30 0.64 16 13 C -0.49 -12.67 8.41 -34.44 -0.29 -12.96 16 14 H 0.06 1.59 7.90 -52.49 -0.41 1.17 16 15 C 0.07 1.88 4.80 -17.82 -0.09 1.79 16 16 N -0.87 -22.75 11.10 55.43 0.62 -22.14 16 17 Si 0.88 19.38 29.59 -169.99 -5.03 14.35 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 C -0.20 -4.73 9.88 -26.73 -0.26 -4.99 16 22 C -0.21 -4.86 9.91 -26.73 -0.26 -5.13 16 23 C 0.11 1.89 5.75 -3.12 -0.02 1.87 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 27 H 0.06 0.77 7.36 -51.93 -0.38 0.38 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.65 5.73 -51.93 -0.30 0.36 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.74 6.28 -51.93 -0.33 0.41 16 33 H 0.09 1.25 8.14 -51.92 -0.42 0.82 16 34 H 0.10 1.31 5.51 -51.93 -0.29 1.03 16 35 H 0.05 1.22 7.61 -51.93 -0.40 0.82 16 36 H 0.12 3.08 5.39 -51.93 -0.28 2.80 16 37 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 38 H 0.06 1.48 8.08 -51.93 -0.42 1.06 16 39 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 40 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.07 1.81 7.18 -51.93 -0.37 1.43 16 42 H 0.06 1.06 5.71 -51.93 -0.30 0.76 16 43 H 0.09 1.81 7.30 -51.93 -0.38 1.43 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -28.28 331.85 -7.88 -36.16 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.18 Total: 5.85 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -0.88 Total: -13.54 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.12 Total: -34.76 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.28 -7.88 -36.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166940024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.640 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds