Wall clock time and date at job start Mon Mar 30 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47356 * 2 1 4 4 C 1.53006 * 109.46938 * 240.00340 * 2 1 3 5 5 C 1.52995 * 109.47454 * 120.00672 * 2 1 3 6 6 H 1.09002 * 110.88472 * 300.78212 * 5 2 1 7 7 C 1.54627 * 110.96967 * 64.59098 * 5 2 1 8 8 C 1.51287 * 104.31285 * 142.85635 * 7 5 2 9 9 O 1.21279 * 124.93963 * 163.79297 * 8 7 5 10 10 N 1.34648 * 109.98193 * 343.90444 * 8 7 5 11 11 C 1.46500 * 124.31505 * 179.52367 * 10 8 7 12 12 C 1.52997 * 109.47219 * 264.35363 * 11 10 8 13 13 C 1.50705 * 115.54925 * 279.32325 * 12 11 10 14 14 H 1.07998 * 120.00114 * 144.01223 * 13 12 11 15 15 C 1.37876 * 119.99964 * 324.02654 * 13 12 11 16 16 N 1.31515 * 119.99750 * 338.90830 * 15 13 12 17 17 Si 1.86797 * 120.00171 * 158.91366 * 15 13 12 18 18 H 1.48507 * 109.47003 * 59.99886 * 17 15 13 19 19 H 1.48497 * 109.47078 * 179.97438 * 17 15 13 20 20 H 1.48489 * 109.47199 * 299.99752 * 17 15 13 21 21 C 1.52999 * 117.50120 * 133.62418 * 12 11 10 22 22 C 1.52996 * 117.50323 * 64.99831 * 12 11 10 23 23 C 1.46764 * 111.34169 * 359.42010 * 10 8 7 24 24 H 1.08999 * 109.46646 * 299.99426 * 1 2 3 25 25 H 1.08996 * 109.47470 * 59.99254 * 1 2 3 26 26 H 1.08992 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47413 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47440 * 300.00764 * 3 2 1 29 29 H 1.08999 * 109.46775 * 60.00653 * 3 2 1 30 30 H 1.09000 * 109.47212 * 293.89216 * 4 2 1 31 31 H 1.08999 * 109.47057 * 53.89213 * 4 2 1 32 32 H 1.08994 * 109.47206 * 173.88957 * 4 2 1 33 33 H 1.09007 * 110.48701 * 261.59465 * 7 5 2 34 34 H 1.08996 * 110.48846 * 24.10406 * 7 5 2 35 35 H 1.09005 * 109.46923 * 24.34911 * 11 10 8 36 36 H 1.08994 * 109.47678 * 144.34393 * 11 10 8 37 37 H 0.97001 * 119.99917 * 185.03118 * 16 15 13 38 38 H 1.08998 * 117.50287 * 359.97438 * 21 12 11 39 39 H 1.09006 * 117.50175 * 145.01935 * 21 12 11 40 40 H 1.09001 * 117.49879 * 214.98015 * 22 12 11 41 41 H 1.09001 * 117.49896 * 0.02562 * 22 12 11 42 42 H 1.09005 * 110.24446 * 258.13016 * 23 10 8 43 43 H 1.08995 * 110.32622 * 136.16320 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 1 1.6782 -0.2338 2.1544 7 6 1.6404 -2.2149 1.2275 8 6 2.8305 -2.9292 1.8294 9 8 2.8187 -4.0676 2.2477 10 7 3.9023 -2.1142 1.8342 11 6 5.2196 -2.4851 2.3569 12 6 5.3510 -1.9975 3.8012 13 6 5.7053 -0.5421 3.9662 14 1 5.2851 0.0268 4.7824 15 6 6.5656 0.0633 3.0749 16 7 7.3885 -0.6679 2.3554 17 14 6.5626 1.9221 2.8897 18 1 6.8963 2.5500 4.1934 19 1 7.5724 2.3201 1.8762 20 1 5.2173 2.3738 2.4526 21 6 5.9087 -2.9819 4.8311 22 6 4.4219 -2.6211 4.8446 23 6 3.5825 -0.8079 1.2465 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.7686 -1.7756 -1.1964 31 1 1.5901 -0.2743 -2.1359 32 1 3.1244 -0.6275 -1.3058 33 1 0.7497 -2.3804 1.8337 34 1 1.4719 -2.5500 0.2041 35 1 5.3299 -3.5691 2.3280 36 1 5.9959 -2.0246 1.7459 37 1 8.0436 -0.2394 1.7826 38 1 6.1817 -3.9770 4.4800 39 1 6.5321 -2.5769 5.6284 40 1 4.0672 -1.9787 5.6506 41 1 3.7173 -3.3791 4.5023 42 1 3.9617 -0.7502 0.2262 43 1 4.0062 -0.0065 1.8518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166940024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:32 Heat of formation + Delta-G solvation = -35.625081 kcal Electronic energy + Delta-G solvation = -21858.995464 eV Core-core repulsion = 18903.891538 eV Total energy + Delta-G solvation = -2955.103926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.62982 -38.89409 -38.28983 -35.97386 -34.26944 -32.09391 -29.03557 -28.15470 -27.98041 -27.25947 -26.92815 -23.34380 -22.98319 -21.31986 -20.22148 -19.32670 -18.26473 -17.57440 -17.13929 -16.68704 -16.17017 -15.52263 -15.25599 -15.19306 -14.99094 -14.66765 -14.52103 -14.05220 -13.72218 -13.58080 -13.22620 -12.98179 -12.87537 -12.68222 -12.56453 -12.40826 -12.38953 -12.26100 -12.18530 -12.09898 -11.63608 -11.51712 -11.28257 -11.21864 -11.08116 -10.68865 -10.65407 -10.01428 -9.37213 -8.15503 -6.16234 1.41525 1.45809 1.52781 1.70920 2.33121 2.40959 2.94006 3.47568 3.54128 3.64289 3.75504 4.07038 4.22557 4.25073 4.26034 4.39213 4.46301 4.61932 4.67395 4.69828 4.75982 4.79984 4.87111 4.89169 4.92883 5.01064 5.04828 5.08280 5.14330 5.18580 5.20038 5.24677 5.32945 5.41830 5.44462 5.46835 5.59517 5.62113 5.80985 5.91347 6.35174 6.54846 6.77973 7.34688 7.39947 8.87721 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.009079 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.497468 B = 3083.270169 C = 4294.656344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.151 4.151 5 C -0.079 4.079 6 H 0.088 0.912 7 C -0.139 4.139 8 C 0.494 3.506 9 O -0.596 6.596 10 N -0.593 5.593 11 C 0.157 3.843 12 C 0.025 3.975 13 C -0.507 4.507 14 H 0.049 0.951 15 C 0.045 3.955 16 N -0.893 5.893 17 Si 0.934 3.066 18 H -0.280 1.280 19 H -0.282 1.282 20 H -0.255 1.255 21 C -0.201 4.201 22 C -0.191 4.191 23 C 0.106 3.894 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.031 0.969 36 H 0.108 0.892 37 H 0.268 0.732 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 5.073 -8.713 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.051 4.051 3 C -0.203 4.203 4 C -0.208 4.208 5 C -0.098 4.098 6 H 0.106 0.894 7 C -0.179 4.179 8 C 0.284 3.716 9 O -0.479 6.479 10 N -0.323 5.323 11 C 0.035 3.965 12 C 0.024 3.976 13 C -0.544 4.544 14 H 0.067 0.933 15 C -0.157 4.157 16 N -0.530 5.530 17 Si 0.759 3.241 18 H -0.206 1.206 19 H -0.207 1.207 20 H -0.180 1.180 21 C -0.240 4.240 22 C -0.229 4.229 23 C -0.017 4.017 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.142 0.858 35 H 0.050 0.950 36 H 0.126 0.874 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.924 4.515 -8.683 15.427 hybrid contribution 0.799 0.530 0.561 1.111 sum -11.126 5.046 -8.123 14.670 Atomic orbital electron populations 1.21846 0.92496 1.02544 1.02529 1.20421 0.96876 0.94998 0.92795 1.21913 1.00602 0.95193 1.02544 1.22095 1.00882 1.00583 0.97212 1.22218 0.92706 0.94466 1.00400 0.89389 1.22521 0.96115 0.95112 1.04132 1.21758 0.86608 0.85335 0.77913 1.90605 1.85408 1.19958 1.51969 1.48411 1.10617 1.15209 1.58031 1.21004 0.83584 0.96228 0.95658 1.19430 0.97200 0.92997 0.88015 1.20521 1.28518 0.93092 1.12259 0.93261 1.25473 0.93757 1.01640 0.94797 1.69942 1.17635 1.36844 1.28603 0.85990 0.78919 0.81222 0.77937 1.20585 1.20706 1.17956 1.22964 0.95374 0.99974 1.05664 1.22721 0.92287 1.03741 1.04130 1.22311 0.96396 0.84819 0.98169 0.92373 0.91221 0.91921 0.93862 0.90859 0.92516 0.92074 0.90727 0.93352 0.87294 0.85752 0.95008 0.87434 0.92271 0.91456 0.90694 0.90673 0.91429 0.90754 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.30 71.98 0.60 -1.46 16 2 C -0.05 -0.98 0.59 -52.18 -0.03 -1.01 16 3 C -0.15 -2.89 8.29 71.98 0.60 -2.29 16 4 C -0.15 -2.82 7.87 71.98 0.57 -2.25 16 5 C -0.08 -2.06 2.51 -9.74 -0.02 -2.09 16 6 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 7 C -0.14 -3.83 5.30 30.59 0.16 -3.67 16 8 C 0.49 19.84 7.90 87.86 0.69 20.53 16 9 O -0.60 -28.58 16.73 -3.03 -0.05 -28.63 16 10 N -0.59 -24.77 2.90 -817.64 -2.37 -27.14 16 11 C 0.16 7.67 5.65 86.38 0.49 8.16 16 12 C 0.02 1.26 1.94 -52.93 -0.10 1.16 16 13 C -0.51 -26.71 8.41 25.60 0.22 -26.50 16 14 H 0.05 2.64 7.90 -2.91 -0.02 2.62 16 15 C 0.05 2.29 4.80 84.65 0.41 2.69 16 16 N -0.89 -47.02 11.10 21.45 0.24 -46.78 16 17 Si 0.93 39.43 29.59 68.60 2.03 41.46 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 21 C -0.20 -9.87 9.88 30.59 0.30 -9.57 16 22 C -0.19 -9.18 9.91 30.59 0.30 -8.88 16 23 C 0.11 3.66 5.75 86.83 0.50 4.16 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.89 7.45 -2.39 -0.02 0.87 16 27 H 0.04 1.01 7.36 -2.38 -0.02 0.99 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.13 5.73 -2.39 -0.01 1.11 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.04 6.28 -2.39 -0.02 1.03 16 33 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.12 2.86 5.51 -2.39 -0.01 2.85 16 35 H 0.03 1.62 7.61 -2.38 -0.02 1.60 16 36 H 0.11 5.58 5.39 -2.39 -0.01 5.56 16 37 H 0.27 13.37 8.32 -92.71 -0.77 12.60 16 38 H 0.07 3.20 8.08 -2.39 -0.02 3.18 16 39 H 0.07 3.65 8.14 -2.38 -0.02 3.63 16 40 H 0.07 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.07 3.33 7.18 -2.39 -0.02 3.31 16 42 H 0.07 2.41 5.71 -2.38 -0.01 2.39 16 43 H 0.07 2.63 7.30 -2.39 -0.02 2.61 16 Total: -1.00 -61.38 331.85 5.50 -55.88 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.98 Total: 26.24 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.67 Total: -21.03 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -2.13 Total: -73.92 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.05 Total: -28.63 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -61.38 5.50 -55.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166940024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.250 kcal (2) G-P(sol) polarization free energy of solvation -61.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds