Wall clock time and date at job start Mon Mar 30 2020 07:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46836 * 2 1 4 4 C 1.52998 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47397 * 55.00313 * 4 3 2 6 6 C 1.53002 * 109.47264 * 294.99839 * 4 3 2 7 7 C 1.53002 * 109.47032 * 175.00332 * 4 3 2 8 8 N 1.46903 * 109.47389 * 184.99766 * 7 4 3 9 9 C 1.46897 * 110.99963 * 189.99891 * 8 7 4 10 10 C 1.50701 * 109.47287 * 75.77602 * 9 8 7 11 11 H 1.08002 * 119.99571 * 5.05865 * 10 9 8 12 12 C 1.37875 * 119.99839 * 185.05932 * 10 9 8 13 13 N 1.31513 * 120.00251 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99617 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47200 * 90.00051 * 14 12 10 16 16 H 1.48500 * 109.46817 * 210.00322 * 14 12 10 17 17 H 1.48508 * 109.47226 * 330.00024 * 14 12 10 18 18 C 1.46905 * 110.99578 * 66.04320 * 8 7 4 19 19 C 1.50701 * 109.46811 * 195.90846 * 18 8 7 20 20 C 1.34510 * 125.79072 * 90.00256 * 19 18 8 21 21 C 1.41380 * 106.84435 * 180.02562 * 20 19 18 22 22 C 1.34520 * 106.84147 * 359.97438 * 21 20 19 23 23 O 1.34306 * 108.41697 * 359.74067 * 22 21 20 24 24 H 1.08999 * 109.47181 * 299.99673 * 1 2 3 25 25 H 1.09002 * 109.47451 * 59.99760 * 1 2 3 26 26 H 1.09005 * 109.47325 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46920 * 240.00838 * 2 1 3 28 28 H 1.08993 * 109.47219 * 120.00201 * 2 1 3 29 29 H 1.08999 * 109.46880 * 60.00746 * 3 2 1 30 30 H 1.08993 * 109.47380 * 300.00102 * 3 2 1 31 31 H 1.09006 * 109.46798 * 60.00430 * 6 4 3 32 32 H 1.08995 * 109.47300 * 300.00533 * 6 4 3 33 33 H 1.09001 * 109.47479 * 180.02562 * 6 4 3 34 34 H 1.08999 * 109.47133 * 305.00037 * 7 4 3 35 35 H 1.09003 * 109.47072 * 64.99790 * 7 4 3 36 36 H 1.09000 * 109.46723 * 195.77567 * 9 8 7 37 37 H 1.09000 * 109.47388 * 315.77234 * 9 8 7 38 38 H 0.97002 * 119.99609 * 180.02562 * 13 12 10 39 39 H 1.08996 * 109.47444 * 315.90865 * 18 8 7 40 40 H 1.08998 * 109.46695 * 75.91076 * 18 8 7 41 41 H 1.08003 * 126.57604 * 359.96143 * 20 19 18 42 42 H 1.07997 * 126.58064 * 179.97438 * 21 20 19 43 43 H 1.07994 * 125.79390 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0804 0.8328 1.3064 7 6 4.0798 2.8796 -0.1263 8 7 5.5438 2.8710 -0.2473 9 6 6.0896 4.2299 -0.1320 10 6 6.0651 4.6603 1.3120 11 1 5.7593 3.9632 2.0781 12 6 6.4330 5.9441 1.6550 13 7 6.8047 6.7931 0.7220 14 14 6.4032 6.4774 3.4451 15 1 7.7229 6.1990 4.0665 16 1 6.1162 7.9322 3.5233 17 1 5.3468 5.7248 4.1683 18 6 5.9643 2.2396 -1.5053 19 6 7.4292 1.8943 -1.4289 20 6 7.9416 0.7339 -0.9815 21 6 9.3476 0.8401 -1.0846 22 6 9.6104 2.0589 -1.5894 23 8 8.4444 2.6907 -1.8017 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6765 1.9564 -0.8899 31 1 3.7172 -0.1911 1.3959 32 1 3.7174 1.4220 2.1485 33 1 5.1705 0.8332 1.3062 34 1 3.6448 3.3434 -1.0116 35 1 3.7918 3.4461 0.7593 36 1 7.1166 4.2411 -0.4971 37 1 5.4854 4.9157 -0.7259 38 1 7.0639 7.6962 0.9635 39 1 5.3848 1.3308 -1.6672 40 1 5.7963 2.9298 -2.3320 41 1 7.3856 -0.1156 -0.6131 42 1 10.0718 0.0872 -0.8106 43 1 10.5922 2.4596 -1.7941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183498075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:38 Heat of formation + Delta-G solvation = -4.403225 kcal Electronic energy + Delta-G solvation = -20674.012642 eV Core-core repulsion = 17720.262598 eV Total energy + Delta-G solvation = -2953.750045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.99102 -37.87829 -35.49379 -32.70947 -32.42555 -31.79374 -29.88179 -27.14628 -26.37993 -25.74911 -23.85643 -21.85972 -21.17609 -20.57226 -19.95197 -19.14890 -16.84855 -16.35373 -15.59502 -15.39461 -14.84917 -14.55929 -14.26580 -13.98997 -13.78714 -13.34941 -12.93067 -12.52668 -12.29881 -12.20226 -12.04886 -11.92232 -11.80870 -11.42629 -11.38146 -11.19541 -11.17885 -10.78082 -10.70893 -10.56952 -10.29497 -10.05268 -10.02420 -9.65591 -9.41097 -9.17918 -8.37424 -7.94763 -7.27239 -5.97198 -3.98061 2.27761 3.11859 3.34588 3.40368 3.44023 3.56517 4.46147 4.79060 5.03436 5.11034 5.21142 5.29237 5.34622 5.38298 5.48545 5.50200 5.54647 5.74345 5.78548 5.81826 5.87278 5.90684 6.00143 6.11338 6.16285 6.23966 6.27402 6.34833 6.39946 6.45686 6.48562 6.54351 6.61832 6.85679 6.91384 7.00642 7.28229 7.36630 7.71030 7.85826 8.14025 8.19220 8.55211 9.09949 9.65473 11.13302 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.007294 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.086849 B = 3837.653596 C = 5863.209149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.090 4.090 5 H 0.062 0.938 6 C -0.135 4.135 7 C 0.070 3.930 8 N -0.527 5.527 9 C 0.189 3.811 10 C -0.500 4.500 11 H 0.063 0.937 12 C 0.054 3.946 13 N -0.899 5.899 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.125 3.875 19 C 0.024 3.976 20 C -0.210 4.210 21 C -0.218 4.218 22 C -0.049 4.049 23 O -0.170 6.170 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.086 0.914 36 H 0.032 0.968 37 H -0.004 1.004 38 H 0.260 0.740 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.660 -12.999 -4.205 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.109 4.109 5 H 0.081 0.919 6 C -0.192 4.192 7 C -0.058 4.058 8 N -0.252 5.252 9 C 0.065 3.935 10 C -0.539 4.539 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.003 4.003 19 C -0.027 4.027 20 C -0.230 4.230 21 C -0.238 4.238 22 C -0.117 4.117 23 O -0.065 6.065 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.014 0.986 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.057 0.943 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -4.459 -12.775 -3.960 14.098 hybrid contribution -0.007 0.776 0.436 0.890 sum -4.466 -11.999 -3.524 13.279 Atomic orbital electron populations 1.21784 0.96426 1.01070 1.01675 1.21567 0.95223 0.97469 1.01896 1.21643 0.95585 0.96190 1.01891 1.21235 0.93886 0.97062 0.98687 0.91940 1.21719 1.02487 0.98494 0.96550 1.22046 0.87733 0.95021 1.01031 1.62132 1.08801 1.24376 1.29916 1.19825 0.95023 0.81243 0.97444 1.21130 1.43974 0.96298 0.92487 0.91863 1.24979 0.95672 0.96616 0.97375 1.69968 1.45827 1.05714 1.32385 0.86543 0.78397 0.77520 0.85214 1.20732 1.21392 1.19861 1.20558 0.86076 1.00065 0.93593 1.22373 0.89887 0.89428 1.01011 1.21374 0.94034 0.99647 1.07954 1.21698 0.96220 0.98485 1.07372 1.23867 0.88899 0.93394 1.05577 1.84092 1.14402 1.42303 1.65693 0.92844 0.92985 0.93219 0.92424 0.91787 0.91912 0.92432 0.94151 0.93137 0.91289 0.96195 0.89604 0.94983 0.98582 0.93047 0.88915 0.94278 0.84103 0.84201 0.78894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.15 0.37 -1.07 16 2 C -0.12 -1.32 5.69 -26.73 -0.15 -1.47 16 3 C -0.12 -1.44 4.68 -26.73 -0.13 -1.56 16 4 C -0.09 -1.31 2.33 -90.62 -0.21 -1.52 16 5 H 0.06 0.87 6.10 -51.93 -0.32 0.55 16 6 C -0.14 -2.02 8.84 37.16 0.33 -1.69 16 7 C 0.07 1.29 4.17 -3.82 -0.02 1.27 16 8 N -0.53 -11.11 3.82 -237.51 -0.91 -12.02 16 9 C 0.19 4.98 4.59 -4.98 -0.02 4.96 16 10 C -0.50 -14.17 8.56 -34.44 -0.29 -14.47 16 11 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 14 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.13 2.29 5.37 -4.97 -0.03 2.26 16 19 C 0.02 0.46 6.12 -35.63 -0.22 0.24 16 20 C -0.21 -3.58 10.81 -39.71 -0.43 -4.01 16 21 C -0.22 -3.43 10.91 -39.70 -0.43 -3.87 16 22 C -0.05 -0.81 12.09 29.42 0.36 -0.45 16 23 O -0.17 -3.41 9.80 5.68 0.06 -3.35 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.51 6.57 -51.93 -0.34 0.17 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.17 7.75 -51.93 -0.40 0.77 16 34 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.09 1.77 7.44 -51.93 -0.39 1.39 16 36 H 0.03 0.92 6.46 -51.93 -0.34 0.59 16 37 H 0.00 -0.10 8.00 -51.93 -0.42 -0.52 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.09 1.42 5.87 -51.93 -0.30 1.11 16 40 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 41 H 0.14 2.12 8.06 -52.48 -0.42 1.69 16 42 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -30.93 345.51 -8.36 -39.29 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.46 Total: 0.20 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.97 Total: -19.91 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.17 Total: -38.42 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: 0.06 Total: -3.35 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.93 -8.36 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183498075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.888 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds