Wall clock time and date at job start Mon Mar 30 2020 07:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46836 * 2 1 4 4 C 1.52998 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47397 * 55.00313 * 4 3 2 6 6 C 1.53002 * 109.47264 * 294.99839 * 4 3 2 7 7 C 1.53002 * 109.47032 * 175.00332 * 4 3 2 8 8 N 1.46903 * 109.47389 * 184.99766 * 7 4 3 9 9 C 1.46897 * 110.99963 * 189.99891 * 8 7 4 10 10 C 1.50701 * 109.47287 * 75.77602 * 9 8 7 11 11 H 1.08002 * 119.99571 * 5.05865 * 10 9 8 12 12 C 1.37875 * 119.99839 * 185.05932 * 10 9 8 13 13 N 1.31513 * 120.00251 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99617 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47200 * 90.00051 * 14 12 10 16 16 H 1.48500 * 109.46817 * 210.00322 * 14 12 10 17 17 H 1.48508 * 109.47226 * 330.00024 * 14 12 10 18 18 C 1.46905 * 110.99578 * 66.04320 * 8 7 4 19 19 C 1.50701 * 109.46811 * 195.90846 * 18 8 7 20 20 C 1.34510 * 125.79072 * 90.00256 * 19 18 8 21 21 C 1.41380 * 106.84435 * 180.02562 * 20 19 18 22 22 C 1.34520 * 106.84147 * 359.97438 * 21 20 19 23 23 O 1.34306 * 108.41697 * 359.74067 * 22 21 20 24 24 H 1.08999 * 109.47181 * 299.99673 * 1 2 3 25 25 H 1.09002 * 109.47451 * 59.99760 * 1 2 3 26 26 H 1.09005 * 109.47325 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46920 * 240.00838 * 2 1 3 28 28 H 1.08993 * 109.47219 * 120.00201 * 2 1 3 29 29 H 1.08999 * 109.46880 * 60.00746 * 3 2 1 30 30 H 1.08993 * 109.47380 * 300.00102 * 3 2 1 31 31 H 1.09006 * 109.46798 * 60.00430 * 6 4 3 32 32 H 1.08995 * 109.47300 * 300.00533 * 6 4 3 33 33 H 1.09001 * 109.47479 * 180.02562 * 6 4 3 34 34 H 1.08999 * 109.47133 * 305.00037 * 7 4 3 35 35 H 1.09003 * 109.47072 * 64.99790 * 7 4 3 36 36 H 1.09000 * 109.46723 * 195.77567 * 9 8 7 37 37 H 1.09000 * 109.47388 * 315.77234 * 9 8 7 38 38 H 0.97002 * 119.99609 * 180.02562 * 13 12 10 39 39 H 1.08996 * 109.47444 * 315.90865 * 18 8 7 40 40 H 1.08998 * 109.46695 * 75.91076 * 18 8 7 41 41 H 1.08003 * 126.57604 * 359.96143 * 20 19 18 42 42 H 1.07997 * 126.58064 * 179.97438 * 21 20 19 43 43 H 1.07994 * 125.79390 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0804 0.8328 1.3064 7 6 4.0798 2.8796 -0.1263 8 7 5.5438 2.8710 -0.2473 9 6 6.0896 4.2299 -0.1320 10 6 6.0651 4.6603 1.3120 11 1 5.7593 3.9632 2.0781 12 6 6.4330 5.9441 1.6550 13 7 6.8047 6.7931 0.7220 14 14 6.4032 6.4774 3.4451 15 1 7.7229 6.1990 4.0665 16 1 6.1162 7.9322 3.5233 17 1 5.3468 5.7248 4.1683 18 6 5.9643 2.2396 -1.5053 19 6 7.4292 1.8943 -1.4289 20 6 7.9416 0.7339 -0.9815 21 6 9.3476 0.8401 -1.0846 22 6 9.6104 2.0589 -1.5894 23 8 8.4444 2.6907 -1.8017 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6765 1.9564 -0.8899 31 1 3.7172 -0.1911 1.3959 32 1 3.7174 1.4220 2.1485 33 1 5.1705 0.8332 1.3062 34 1 3.6448 3.3434 -1.0116 35 1 3.7918 3.4461 0.7593 36 1 7.1166 4.2411 -0.4971 37 1 5.4854 4.9157 -0.7259 38 1 7.0639 7.6962 0.9635 39 1 5.3848 1.3308 -1.6672 40 1 5.7963 2.9298 -2.3320 41 1 7.3856 -0.1156 -0.6131 42 1 10.0718 0.0872 -0.8106 43 1 10.5922 2.4596 -1.7941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183498075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:37 Heat of formation + Delta-G solvation = -21.770808 kcal Electronic energy + Delta-G solvation = -20674.765757 eV Core-core repulsion = 17720.262598 eV Total energy + Delta-G solvation = -2954.503160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.35117 -39.33291 -36.79936 -34.75779 -33.80279 -32.93624 -31.39984 -29.05880 -27.50461 -27.03535 -25.64185 -23.30796 -22.49013 -21.88419 -21.26710 -20.50464 -18.56441 -18.15673 -17.06887 -16.82894 -16.40462 -15.87542 -15.77704 -15.53755 -15.07365 -14.52582 -14.33112 -14.03158 -13.72203 -13.57532 -13.43582 -13.28018 -13.08572 -13.06303 -12.76378 -12.63597 -12.56410 -12.39215 -12.23045 -12.02124 -11.71740 -11.50037 -11.27774 -11.18261 -11.03692 -10.71107 -10.58236 -9.31326 -9.02094 -8.18814 -6.28828 0.91626 1.38260 1.39950 1.50992 1.83127 2.28418 2.39580 3.12935 3.33971 3.87245 3.95209 4.05740 4.15250 4.23887 4.26084 4.35184 4.42116 4.48998 4.54065 4.66266 4.78848 4.89848 4.92286 4.99317 5.02874 5.03902 5.11353 5.13491 5.20163 5.24499 5.29442 5.32100 5.32474 5.42346 5.50092 5.62087 5.66707 5.70844 5.77059 6.08125 6.31697 6.41389 6.56757 6.87242 7.40201 8.91610 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.007294 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.086849 B = 3837.653596 C = 5863.209149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.111 4.111 4 C -0.078 4.078 5 H 0.077 0.923 6 C -0.130 4.130 7 C 0.071 3.929 8 N -0.528 5.528 9 C 0.208 3.792 10 C -0.514 4.514 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.936 5.936 14 Si 0.966 3.034 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.128 3.872 19 C -0.016 4.016 20 C -0.203 4.203 21 C -0.219 4.219 22 C -0.060 4.060 23 O -0.206 6.206 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.018 0.982 35 H 0.057 0.943 36 H 0.002 0.998 37 H -0.038 1.038 38 H 0.263 0.737 39 H 0.127 0.873 40 H 0.027 0.973 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 -15.221 -3.349 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.149 4.149 4 C -0.097 4.097 5 H 0.095 0.905 6 C -0.187 4.187 7 C -0.057 4.057 8 N -0.253 5.253 9 C 0.082 3.918 10 C -0.552 4.552 11 H 0.079 0.921 12 C -0.197 4.197 13 N -0.577 5.577 14 Si 0.790 3.210 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.187 1.187 18 C 0.000 4.000 19 C -0.066 4.066 20 C -0.223 4.223 21 C -0.238 4.238 22 C -0.127 4.127 23 O -0.103 6.103 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.020 0.980 37 H -0.020 1.020 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.046 0.954 41 H 0.180 0.820 42 H 0.192 0.808 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.806 -15.026 -3.106 16.078 hybrid contribution 0.141 1.437 0.116 1.448 sum -4.665 -13.589 -2.990 14.675 Atomic orbital electron populations 1.21773 0.95488 1.01949 1.01683 1.21531 0.96041 0.95707 1.02430 1.21606 0.93732 0.97886 1.01696 1.21156 0.95364 0.93971 0.99173 0.90456 1.21663 1.00995 0.99996 0.96074 1.22086 0.86286 0.97769 0.99565 1.62055 1.10232 1.20998 1.31970 1.19395 0.92979 0.83536 0.95873 1.21408 1.43847 0.96637 0.93314 0.92141 1.25894 0.95056 0.96630 1.02111 1.70105 1.46666 1.06134 1.34769 0.85440 0.78763 0.77294 0.79484 1.20066 1.20689 1.18737 1.20655 0.86918 1.00779 0.91616 1.22587 0.90006 0.90483 1.03527 1.21754 0.95002 0.99298 1.06225 1.22126 0.96245 0.98885 1.06526 1.24706 0.89133 0.93855 1.05009 1.84062 1.15783 1.43782 1.66656 0.93063 0.92837 0.91912 0.91557 0.91523 0.92649 0.92239 0.91268 0.94416 0.93449 0.96396 0.92433 0.97992 1.02035 0.92843 0.85505 0.95449 0.81964 0.80850 0.75698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.77 16 2 C -0.12 -2.21 5.69 30.59 0.17 -2.04 16 3 C -0.11 -2.60 4.68 30.60 0.14 -2.46 16 4 C -0.08 -2.17 2.33 -10.79 -0.03 -2.20 16 5 H 0.08 1.95 6.10 -2.39 -0.01 1.93 16 6 C -0.13 -3.69 8.84 71.98 0.64 -3.06 16 7 C 0.07 2.67 4.17 86.30 0.36 3.03 16 8 N -0.53 -22.92 3.82 -905.35 -3.46 -26.38 16 9 C 0.21 11.54 4.59 85.56 0.39 11.93 16 10 C -0.51 -30.05 8.56 25.60 0.22 -29.84 16 11 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 14 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 15 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 18 C 0.13 4.74 5.37 85.56 0.46 5.20 16 19 C -0.02 -0.61 6.12 24.83 0.15 -0.46 16 20 C -0.20 -6.62 10.81 22.19 0.24 -6.38 16 21 C -0.22 -6.43 10.91 22.19 0.24 -6.19 16 22 C -0.06 -1.92 12.09 66.97 0.81 -1.11 16 23 O -0.21 -8.49 9.80 -2.58 -0.03 -8.52 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 1.21 6.57 -2.39 -0.02 1.19 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.56 6.57 -2.38 -0.02 1.54 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.55 7.75 -2.39 -0.02 1.53 16 34 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 35 H 0.06 2.48 7.44 -2.39 -0.02 2.46 16 36 H 0.00 0.12 6.46 -2.39 -0.02 0.11 16 37 H -0.04 -2.31 8.00 -2.39 -0.02 -2.33 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.13 3.72 5.87 -2.39 -0.01 3.70 16 40 H 0.03 1.07 8.05 -2.39 -0.02 1.05 16 41 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 43 H 0.23 5.22 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -69.34 345.51 4.75 -64.58 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.95 Total: 15.40 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 4.98 Total: -34.82 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -3.18 Total: -84.29 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.03 Total: -8.52 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.34 4.75 -64.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183498075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.811 kcal (2) G-P(sol) polarization free energy of solvation -69.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds