Wall clock time and date at job start Mon Mar 30 2020 07:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47450 * 2 1 4 4 C 1.53007 * 109.47214 * 120.00336 * 2 1 3 5 5 H 1.08995 * 115.55805 * 280.66554 * 4 2 1 6 6 C 1.52998 * 117.49597 * 134.97897 * 4 2 1 7 7 C 1.53000 * 117.49563 * 66.35842 * 4 2 1 8 8 H 1.09003 * 117.50936 * 214.96697 * 7 4 2 9 9 C 1.50689 * 117.50427 * 0.02562 * 7 4 2 10 10 O 1.21286 * 120.00162 * 42.43015 * 9 7 4 11 11 N 1.34774 * 120.00366 * 222.43110 * 9 7 4 12 12 C 1.46499 * 120.00685 * 179.97438 * 11 9 7 13 13 C 1.50706 * 109.46900 * 89.99797 * 12 11 9 14 14 H 1.07999 * 119.99699 * 0.02562 * 13 12 11 15 15 C 1.37868 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00267 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00047 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47337 * 89.99779 * 17 15 13 19 19 H 1.48497 * 109.47199 * 210.00360 * 17 15 13 20 20 H 1.48498 * 109.46965 * 329.99902 * 17 15 13 21 21 C 1.46502 * 119.99840 * 0.02562 * 11 9 7 22 22 C 1.53000 * 109.47135 * 269.99987 * 21 11 9 23 23 C 1.52999 * 117.49823 * 243.61841 * 22 21 11 24 24 C 1.53001 * 60.00080 * 252.51265 * 23 22 21 25 25 H 1.09001 * 109.46989 * 290.87578 * 1 2 3 26 26 H 1.08998 * 109.47061 * 50.87621 * 1 2 3 27 27 H 1.09002 * 109.47250 * 170.88127 * 1 2 3 28 28 H 1.09004 * 109.47125 * 239.99814 * 2 1 3 29 29 H 1.08994 * 109.47263 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47031 * 300.00779 * 3 2 1 31 31 H 1.09003 * 109.46589 * 59.99773 * 3 2 1 32 32 H 1.09007 * 117.49741 * 145.01918 * 6 4 2 33 33 H 1.09001 * 117.50059 * 0.02562 * 6 4 2 34 34 H 1.08994 * 109.47509 * 210.00351 * 12 11 9 35 35 H 1.08996 * 109.46912 * 330.00806 * 12 11 9 36 36 H 0.97007 * 119.99899 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.47334 * 29.99740 * 21 11 9 38 38 H 1.08994 * 109.47523 * 149.99514 * 21 11 9 39 39 H 1.09003 * 115.54841 * 29.32879 * 22 21 11 40 40 H 1.09008 * 117.49889 * 0.02562 * 23 22 21 41 41 H 1.09001 * 117.49900 * 145.01935 * 23 22 21 42 42 H 1.09005 * 117.49542 * 252.51358 * 24 23 22 43 43 H 1.08997 * 117.49835 * 107.49077 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2493 5 1 2.0252 -0.1366 2.1689 6 6 3.1800 -1.7258 1.0690 7 6 1.7624 -2.2218 1.3614 8 1 1.5651 -2.6244 2.3549 9 6 1.0081 -2.8762 0.2329 10 8 1.2733 -2.5956 -0.9169 11 7 0.0388 -3.7733 0.5011 12 6 -0.6950 -4.4091 -0.5960 13 6 0.0131 -5.6744 -1.0070 14 1 0.9187 -5.9750 -0.5012 15 6 -0.4954 -6.4481 -2.0286 16 7 -1.5980 -6.0818 -2.6448 17 14 0.3819 -8.0168 -2.5375 18 1 -0.1444 -9.1575 -1.7457 19 1 0.1487 -8.2678 -3.9825 20 1 1.8388 -7.8721 -2.2891 21 6 -0.2820 -4.1118 1.8899 22 6 0.5807 -5.2928 2.3393 23 6 -0.1373 -6.5935 2.7045 24 6 0.4788 -5.7253 3.8033 25 1 -0.3633 0.3662 0.9602 26 1 -0.3633 0.6484 -0.7972 27 1 -0.3634 -1.0147 -0.1629 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9151 -1.8019 1.8702 33 1 3.5668 -1.8725 0.0606 34 1 -1.7057 -4.6490 -0.2661 35 1 -0.7421 -3.7271 -1.4449 36 1 -1.9559 -6.6264 -3.3633 37 1 -0.0820 -3.2518 2.5291 38 1 -1.3353 -4.3823 1.9640 39 1 1.5550 -5.3735 1.8572 40 1 -1.2243 -6.6081 2.6242 41 1 0.3645 -7.5304 2.4626 42 1 1.3860 -6.0910 4.2844 43 1 -0.2029 -5.1685 4.4463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185315076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:29 Heat of formation + Delta-G solvation = 1.519289 kcal Electronic energy + Delta-G solvation = -21189.202527 eV Core-core repulsion = 18235.709301 eV Total energy + Delta-G solvation = -2953.493225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.81085 -37.51316 -36.41809 -34.21346 -33.14908 -32.42501 -28.06865 -26.92555 -26.11975 -24.25566 -22.73496 -22.01662 -21.67616 -20.50526 -19.86682 -17.94484 -16.55570 -16.43698 -15.66253 -15.05489 -14.72649 -14.41212 -14.16543 -13.76157 -13.51821 -13.35346 -12.62048 -12.55166 -12.30193 -12.03140 -11.99800 -11.63906 -11.34048 -11.22042 -11.17698 -11.02879 -10.91118 -10.85302 -10.59499 -10.48160 -10.25464 -9.94928 -9.87139 -9.71249 -9.55033 -9.46655 -8.73033 -8.37924 -7.60246 -5.98865 -4.01563 3.16983 3.32195 3.39003 3.43428 3.89020 4.22311 4.30234 4.48960 4.79298 4.97519 5.11196 5.17730 5.22084 5.26354 5.35941 5.36885 5.49178 5.54204 5.59260 5.76553 5.78879 5.85945 5.86704 5.92686 5.96531 6.06677 6.09251 6.11318 6.18643 6.28663 6.30466 6.43481 6.43870 6.65248 6.65764 6.80138 7.12884 7.49032 7.62400 7.98294 8.30346 8.49640 8.97613 9.19324 9.62654 11.09504 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.006697 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.109333 B = 4180.228655 C = 5152.776837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C -0.140 4.140 4 C -0.115 4.115 5 H 0.104 0.896 6 C -0.149 4.149 7 C -0.191 4.191 8 H 0.116 0.884 9 C 0.540 3.460 10 O -0.538 6.538 11 N -0.593 5.593 12 C 0.248 3.752 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.897 5.897 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.146 3.854 22 C -0.153 4.153 23 C -0.164 4.164 24 C -0.191 4.191 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.029 0.971 35 H 0.042 0.958 36 H 0.261 0.739 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 8.533 12.429 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.134 4.134 5 H 0.122 0.878 6 C -0.186 4.186 7 C -0.213 4.213 8 H 0.134 0.866 9 C 0.328 3.672 10 O -0.416 6.416 11 N -0.324 5.324 12 C 0.129 3.871 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.537 5.537 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.021 3.979 22 C -0.173 4.173 23 C -0.201 4.201 24 C -0.229 4.229 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.633 8.615 11.639 15.204 hybrid contribution 0.392 -1.257 -0.144 1.324 sum 5.024 7.358 11.495 14.544 Atomic orbital electron populations 1.21790 0.95157 1.02552 1.00466 1.20808 0.95852 0.95074 0.97516 1.21794 1.00675 0.96144 1.01172 1.22324 1.01916 0.89340 0.99829 0.87793 1.23016 0.89945 1.02174 1.03482 1.22534 1.00529 0.98093 1.00099 0.86583 1.19237 0.79966 0.79342 0.88668 1.90629 1.65866 1.63274 1.21854 1.48096 1.36370 1.40795 1.07093 1.19263 0.90727 0.92775 0.84294 1.21397 1.09989 1.06505 1.17294 0.92458 1.24906 0.95097 0.98064 0.96099 1.69932 1.20927 1.38771 1.24088 0.86564 0.80065 0.83449 0.77747 1.20740 1.21215 1.20023 1.21013 0.98405 0.95124 0.83322 1.22765 1.01544 0.96918 0.96035 1.22874 1.00120 0.95172 1.01905 1.22966 1.02954 1.05223 0.91744 0.93605 0.93081 0.91941 0.88747 0.92940 0.92876 0.93248 0.88680 0.87830 0.95319 0.93956 0.92885 0.91253 0.90755 0.87845 0.88801 0.89263 0.89431 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.86 37.16 0.33 -1.84 16 2 C -0.07 -1.08 2.27 -90.62 -0.21 -1.29 16 3 C -0.14 -1.63 9.18 37.16 0.34 -1.29 16 4 C -0.12 -1.55 5.05 -90.62 -0.46 -2.01 16 5 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 6 C -0.15 -2.07 9.70 -26.73 -0.26 -2.33 16 7 C -0.19 -2.97 5.40 -91.78 -0.50 -3.46 16 8 H 0.12 1.58 6.12 -51.93 -0.32 1.26 16 9 C 0.54 11.10 5.28 -10.99 -0.06 11.04 16 10 O -0.54 -13.08 13.17 5.55 0.07 -13.00 16 11 N -0.59 -12.46 2.46 -175.07 -0.43 -12.89 16 12 C 0.25 6.45 5.20 -5.19 -0.03 6.43 16 13 C -0.51 -14.41 9.39 -34.44 -0.32 -14.74 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 17 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 C 0.15 2.41 5.36 -4.04 -0.02 2.39 16 22 C -0.15 -2.45 5.97 -90.62 -0.54 -2.99 16 23 C -0.16 -2.51 10.18 -26.73 -0.27 -2.78 16 24 C -0.19 -2.40 10.25 -26.73 -0.27 -2.68 16 25 H 0.04 0.61 8.12 -51.93 -0.42 0.18 16 26 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 27 H 0.06 1.15 5.74 -51.93 -0.30 0.85 16 28 H 0.09 1.68 6.26 -51.93 -0.33 1.36 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.64 7.86 -51.93 -0.41 1.23 16 34 H 0.03 0.76 7.89 -51.93 -0.41 0.35 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 0.95 6.14 -51.93 -0.32 0.63 16 38 H 0.07 1.21 7.63 -51.93 -0.40 0.82 16 39 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.09 1.43 8.03 -51.92 -0.42 1.02 16 41 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -31.27 346.05 -9.26 -40.52 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.47 Total: 3.05 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.36 Total: -13.93 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.31 Total: -38.94 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.07 Total: -13.00 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.27 -9.26 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185315076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.043 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds