Wall clock time and date at job start Mon Mar 30 2020 07:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47450 * 2 1 4 4 C 1.53007 * 109.47214 * 120.00336 * 2 1 3 5 5 H 1.08995 * 115.55805 * 280.66554 * 4 2 1 6 6 C 1.52998 * 117.49597 * 134.97897 * 4 2 1 7 7 C 1.53000 * 117.49563 * 66.35842 * 4 2 1 8 8 H 1.09003 * 117.50936 * 214.96697 * 7 4 2 9 9 C 1.50689 * 117.50427 * 0.02562 * 7 4 2 10 10 O 1.21286 * 120.00162 * 42.43015 * 9 7 4 11 11 N 1.34774 * 120.00366 * 222.43110 * 9 7 4 12 12 C 1.46499 * 120.00685 * 179.97438 * 11 9 7 13 13 C 1.50706 * 109.46900 * 89.99797 * 12 11 9 14 14 H 1.07999 * 119.99699 * 0.02562 * 13 12 11 15 15 C 1.37868 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00267 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00047 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47337 * 89.99779 * 17 15 13 19 19 H 1.48497 * 109.47199 * 210.00360 * 17 15 13 20 20 H 1.48498 * 109.46965 * 329.99902 * 17 15 13 21 21 C 1.46502 * 119.99840 * 0.02562 * 11 9 7 22 22 C 1.53000 * 109.47135 * 269.99987 * 21 11 9 23 23 C 1.52999 * 117.49823 * 243.61841 * 22 21 11 24 24 C 1.53001 * 60.00080 * 252.51265 * 23 22 21 25 25 H 1.09001 * 109.46989 * 290.87578 * 1 2 3 26 26 H 1.08998 * 109.47061 * 50.87621 * 1 2 3 27 27 H 1.09002 * 109.47250 * 170.88127 * 1 2 3 28 28 H 1.09004 * 109.47125 * 239.99814 * 2 1 3 29 29 H 1.08994 * 109.47263 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47031 * 300.00779 * 3 2 1 31 31 H 1.09003 * 109.46589 * 59.99773 * 3 2 1 32 32 H 1.09007 * 117.49741 * 145.01918 * 6 4 2 33 33 H 1.09001 * 117.50059 * 0.02562 * 6 4 2 34 34 H 1.08994 * 109.47509 * 210.00351 * 12 11 9 35 35 H 1.08996 * 109.46912 * 330.00806 * 12 11 9 36 36 H 0.97007 * 119.99899 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.47334 * 29.99740 * 21 11 9 38 38 H 1.08994 * 109.47523 * 149.99514 * 21 11 9 39 39 H 1.09003 * 115.54841 * 29.32879 * 22 21 11 40 40 H 1.09008 * 117.49889 * 0.02562 * 23 22 21 41 41 H 1.09001 * 117.49900 * 145.01935 * 23 22 21 42 42 H 1.09005 * 117.49542 * 252.51358 * 24 23 22 43 43 H 1.08997 * 117.49835 * 107.49077 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2493 5 1 2.0252 -0.1366 2.1689 6 6 3.1800 -1.7258 1.0690 7 6 1.7624 -2.2218 1.3614 8 1 1.5651 -2.6244 2.3549 9 6 1.0081 -2.8762 0.2329 10 8 1.2733 -2.5956 -0.9169 11 7 0.0388 -3.7733 0.5011 12 6 -0.6950 -4.4091 -0.5960 13 6 0.0131 -5.6744 -1.0070 14 1 0.9187 -5.9750 -0.5012 15 6 -0.4954 -6.4481 -2.0286 16 7 -1.5980 -6.0818 -2.6448 17 14 0.3819 -8.0168 -2.5375 18 1 -0.1444 -9.1575 -1.7457 19 1 0.1487 -8.2678 -3.9825 20 1 1.8388 -7.8721 -2.2891 21 6 -0.2820 -4.1118 1.8899 22 6 0.5807 -5.2928 2.3393 23 6 -0.1373 -6.5935 2.7045 24 6 0.4788 -5.7253 3.8033 25 1 -0.3633 0.3662 0.9602 26 1 -0.3633 0.6484 -0.7972 27 1 -0.3634 -1.0147 -0.1629 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9151 -1.8019 1.8702 33 1 3.5668 -1.8725 0.0606 34 1 -1.7057 -4.6490 -0.2661 35 1 -0.7421 -3.7271 -1.4449 36 1 -1.9559 -6.6264 -3.3633 37 1 -0.0820 -3.2518 2.5291 38 1 -1.3353 -4.3823 1.9640 39 1 1.5550 -5.3735 1.8572 40 1 -1.2243 -6.6081 2.6242 41 1 0.3645 -7.5304 2.4626 42 1 1.3860 -6.0910 4.2844 43 1 -0.2029 -5.1685 4.4463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185315076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:28 Heat of formation + Delta-G solvation = -15.501670 kcal Electronic energy + Delta-G solvation = -21189.940611 eV Core-core repulsion = 18235.709301 eV Total energy + Delta-G solvation = -2954.231309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27069 -38.78506 -37.78700 -35.94064 -34.63918 -34.17523 -30.02496 -28.04023 -27.58998 -26.04260 -23.89828 -23.35595 -23.09289 -21.79605 -21.06360 -19.42855 -18.62362 -17.96295 -17.20239 -16.44947 -16.40298 -15.94427 -15.56932 -15.01947 -14.88631 -14.56851 -14.36861 -13.93724 -13.64749 -13.60817 -13.32626 -13.05477 -13.01128 -12.83834 -12.67717 -12.52728 -12.26744 -12.25008 -12.10862 -11.97519 -11.65247 -11.61210 -11.21740 -11.08165 -10.86127 -10.74025 -10.59492 -10.34304 -9.37631 -8.20336 -6.32390 1.32510 1.35338 1.45099 1.72510 2.30213 2.44219 3.03648 3.05906 3.09058 3.60193 3.78431 3.94801 3.97883 4.06398 4.12265 4.23883 4.30960 4.40538 4.47779 4.53186 4.65795 4.72532 4.82019 4.84271 4.88182 4.89129 4.92376 5.01398 5.05960 5.12685 5.13782 5.23066 5.26783 5.34953 5.35466 5.38037 5.45551 5.61361 5.66851 5.90955 6.10619 6.74242 6.87291 7.32453 7.59337 8.86880 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.006697 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.109333 B = 4180.228655 C = 5152.776837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.097 4.097 5 H 0.147 0.853 6 C -0.143 4.143 7 C -0.202 4.202 8 H 0.146 0.854 9 C 0.532 3.468 10 O -0.590 6.590 11 N -0.600 5.600 12 C 0.267 3.733 13 C -0.521 4.521 14 H 0.050 0.950 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.960 3.040 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.276 1.276 21 C 0.144 3.856 22 C -0.174 4.174 23 C -0.187 4.187 24 C -0.143 4.143 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.020 0.980 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.016 0.984 35 H -0.006 1.006 36 H 0.265 0.735 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 9.183 15.856 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.190 4.190 4 C -0.115 4.115 5 H 0.165 0.835 6 C -0.180 4.180 7 C -0.223 4.223 8 H 0.163 0.837 9 C 0.323 3.677 10 O -0.472 6.472 11 N -0.330 5.330 12 C 0.146 3.854 13 C -0.560 4.560 14 H 0.068 0.932 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.785 3.215 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.201 1.201 21 C 0.022 3.978 22 C -0.193 4.193 23 C -0.224 4.224 24 C -0.180 4.180 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.092 0.908 34 H 0.034 0.966 35 H 0.013 0.987 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.970 9.263 15.114 18.705 hybrid contribution -0.053 -1.423 -1.257 1.899 sum 5.917 7.840 13.858 16.986 Atomic orbital electron populations 1.21747 0.95894 1.00046 1.01901 1.20780 0.95253 0.97026 0.96660 1.21723 1.01210 0.93762 1.02273 1.22523 1.00315 0.88090 1.00590 0.83536 1.23107 0.89943 1.01677 1.03261 1.22481 1.01195 0.99711 0.98876 0.83681 1.20168 0.79449 0.78570 0.89553 1.90604 1.67324 1.64733 1.24512 1.48065 1.36264 1.40779 1.07855 1.18654 0.90718 0.91340 0.84728 1.21592 1.09702 1.07224 1.17449 0.93175 1.25781 0.95832 1.01494 0.96079 1.70054 1.22315 1.40182 1.24619 0.85527 0.78643 0.79726 0.77606 1.18910 1.20726 1.20068 1.21270 0.98499 0.96992 0.81074 1.22595 1.00331 0.96984 0.99421 1.22926 0.99867 0.94863 1.04769 1.23060 1.03308 1.01957 0.89693 0.90870 0.93167 0.96055 0.93157 0.92010 0.93130 0.90825 0.84764 0.90810 0.96604 0.98745 0.92639 0.87524 0.91039 0.90229 0.89320 0.90126 0.87532 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 8.86 71.98 0.64 -3.59 16 2 C -0.08 -2.25 2.27 -10.79 -0.02 -2.27 16 3 C -0.13 -2.76 9.18 71.98 0.66 -2.10 16 4 C -0.10 -2.32 5.05 -10.79 -0.05 -2.37 16 5 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 6 C -0.14 -3.66 9.70 30.59 0.30 -3.36 16 7 C -0.20 -5.91 5.40 -11.54 -0.06 -5.97 16 8 H 0.15 3.36 6.12 -2.39 -0.01 3.35 16 9 C 0.53 22.63 5.28 87.65 0.46 23.09 16 10 O -0.59 -30.81 13.17 -3.05 -0.04 -30.85 16 11 N -0.60 -26.19 2.46 -826.17 -2.03 -28.22 16 12 C 0.27 14.81 5.20 85.64 0.45 15.25 16 13 C -0.52 -30.63 9.39 25.60 0.24 -30.39 16 14 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 15 C 0.01 0.37 5.46 84.65 0.46 0.84 16 16 N -0.93 -57.73 13.29 21.44 0.28 -57.44 16 17 Si 0.96 46.39 29.54 68.60 2.03 48.42 16 18 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 21 C 0.14 4.65 5.36 86.38 0.46 5.12 16 22 C -0.17 -5.35 5.97 -10.79 -0.06 -5.41 16 23 C -0.19 -5.55 10.18 30.59 0.31 -5.24 16 24 C -0.14 -3.07 10.25 30.60 0.31 -2.76 16 25 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 26 H 0.05 1.48 8.12 -2.39 -0.02 1.46 16 27 H 0.02 0.80 5.74 -2.39 -0.01 0.79 16 28 H 0.05 1.90 6.26 -2.38 -0.01 1.88 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.07 2.36 7.86 -2.39 -0.02 2.34 16 34 H 0.02 0.91 7.89 -2.39 -0.02 0.89 16 35 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 36 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 37 H 0.11 2.61 6.14 -2.39 -0.01 2.59 16 38 H 0.07 2.32 7.63 -2.39 -0.02 2.30 16 39 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.09 2.68 8.03 -2.38 -0.02 2.66 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -74.44 346.05 5.29 -69.14 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.96 Total: 18.11 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 4.09 Total: -19.17 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.74 Total: -85.66 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.04 Total: -30.85 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -74.44 5.29 -69.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185315076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.641 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds