Wall clock time and date at job start Mon Mar 30 2020 07:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.53001 * 109.47036 * 119.99967 * 2 1 3 5 5 H 1.09002 * 115.54929 * 325.67044 * 4 2 1 6 6 C 1.52997 * 117.51720 * 111.36796 * 4 2 1 7 7 C 1.53005 * 117.49933 * 179.97438 * 4 2 1 8 8 H 1.09000 * 117.49670 * 359.97438 * 7 4 2 9 9 C 1.50693 * 117.49671 * 144.99781 * 7 4 2 10 10 O 1.21287 * 120.00663 * 359.97438 * 9 7 4 11 11 N 1.34780 * 119.99931 * 180.02562 * 9 7 4 12 12 C 1.46501 * 119.99998 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.46760 * 269.99260 * 12 11 9 14 14 H 1.08002 * 119.99985 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47026 * 60.00514 * 17 15 13 19 19 H 1.48502 * 109.47185 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47259 * 300.00173 * 17 15 13 21 21 C 1.46497 * 119.99987 * 359.97438 * 11 9 7 22 22 C 1.53003 * 109.47329 * 270.00533 * 21 11 9 23 23 C 1.53001 * 117.51964 * 116.28255 * 22 21 11 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 21 25 25 H 1.09003 * 109.47026 * 59.99881 * 1 2 3 26 26 H 1.08995 * 109.47693 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47352 * 300.00375 * 1 2 3 28 28 H 1.09003 * 109.47328 * 240.00133 * 2 1 3 29 29 H 1.08998 * 109.47499 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47129 * 300.00056 * 3 2 1 31 31 H 1.08999 * 109.47175 * 59.99516 * 3 2 1 32 32 H 1.08998 * 117.50383 * 359.97438 * 6 4 2 33 33 H 1.09004 * 117.50061 * 214.96877 * 6 4 2 34 34 H 1.08998 * 109.47531 * 29.99334 * 12 11 9 35 35 H 1.09000 * 109.47050 * 150.00101 * 12 11 9 36 36 H 0.97000 * 120.00206 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.47381 * 150.00018 * 21 11 9 38 38 H 1.09005 * 109.46933 * 30.00197 * 21 11 9 39 39 H 1.09002 * 115.54973 * 330.58039 * 22 21 11 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 21 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 21 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.51638 * 107.47550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.4309 -0.5979 2.1448 6 6 2.7417 -2.0664 1.0519 7 6 3.5550 -0.8286 1.4340 8 1 4.1883 -0.3858 0.6654 9 6 4.0913 -0.7553 2.8404 10 8 3.3293 -0.6156 3.7736 11 7 5.4179 -0.8439 3.0612 12 6 5.9393 -0.7731 4.4284 13 6 6.2319 0.6626 4.7808 14 1 6.0474 1.4442 4.0586 15 6 6.7349 0.9784 6.0250 16 7 6.9600 0.0266 6.9042 17 14 7.0969 2.7582 6.4620 18 1 5.8473 3.5550 6.3675 19 1 7.6255 2.8300 7.8479 20 1 8.1049 3.3044 5.5183 21 6 6.3385 -1.0121 1.9340 22 6 6.5433 -2.5035 1.6609 23 6 6.0685 -3.0469 0.3117 24 6 7.5650 -2.8919 0.5902 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.8398 -2.4381 0.0320 33 1 2.5944 -2.8280 1.8177 34 1 5.1989 -1.1735 5.1209 35 1 6.8562 -1.3584 4.4984 36 1 7.3136 0.2487 7.7797 37 1 7.2966 -0.5519 2.1756 38 1 5.9192 -0.5347 1.0482 39 1 6.4496 -3.1574 2.5279 40 1 5.6625 -4.0582 0.2912 41 1 5.6097 -2.3418 -0.3814 42 1 8.0909 -2.0848 0.0801 43 1 8.1437 -3.8011 0.7531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185315093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:31 Heat of formation + Delta-G solvation = -3.542727 kcal Electronic energy + Delta-G solvation = -20789.902615 eV Core-core repulsion = 17836.189884 eV Total energy + Delta-G solvation = -2953.712731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.63354 -37.58143 -36.82535 -34.34295 -33.16650 -32.43425 -28.01703 -27.15484 -26.24023 -24.30371 -22.79953 -22.24098 -21.81263 -20.60387 -19.69575 -18.18133 -16.81657 -16.40812 -15.53583 -15.07197 -14.82828 -14.43794 -14.28802 -14.18543 -13.46119 -13.18902 -13.06996 -12.61266 -12.32453 -12.18531 -12.05965 -11.80712 -11.46554 -11.38984 -11.25522 -11.17661 -11.06118 -10.88320 -10.60380 -10.57391 -10.29494 -10.11203 -9.98484 -9.79484 -9.69281 -9.59235 -8.80556 -8.40298 -7.61991 -6.01325 -4.05865 3.25476 3.33705 3.37930 3.41695 3.81431 4.05100 4.18052 4.46967 4.69774 4.89034 4.93693 5.02084 5.09900 5.12970 5.27169 5.32576 5.33684 5.43029 5.48035 5.62740 5.65890 5.67372 5.73177 5.83770 5.88613 5.91508 5.92602 6.04277 6.07336 6.13286 6.18825 6.22591 6.24798 6.34791 6.51468 6.56078 7.12130 7.47970 7.60052 7.95492 8.27034 8.49256 8.93881 9.17763 9.59179 11.06721 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.006228 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.584212 B = 4494.746113 C = 5739.703655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.121 4.121 5 H 0.115 0.885 6 C -0.147 4.147 7 C -0.177 4.177 8 H 0.115 0.885 9 C 0.536 3.464 10 O -0.543 6.543 11 N -0.591 5.591 12 C 0.247 3.753 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.145 3.855 22 C -0.161 4.161 23 C -0.178 4.178 24 C -0.180 4.180 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 -4.010 -16.916 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.204 4.204 4 C -0.140 4.140 5 H 0.133 0.867 6 C -0.185 4.185 7 C -0.198 4.198 8 H 0.132 0.868 9 C 0.323 3.677 10 O -0.421 6.421 11 N -0.321 5.321 12 C 0.128 3.872 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 C 0.020 3.980 22 C -0.181 4.181 23 C -0.215 4.215 24 C -0.217 4.217 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.542 -3.955 -16.185 17.559 hybrid contribution 0.500 0.919 0.315 1.093 sum -5.042 -3.036 -15.870 16.926 Atomic orbital electron populations 1.21795 0.94927 1.01689 1.01654 1.20700 0.95695 0.95979 0.95863 1.21821 1.01276 0.95701 1.01580 1.22433 0.93127 0.98562 0.99870 0.86705 1.22949 1.02424 0.90990 1.02114 1.22320 0.95158 1.05042 0.97256 0.86757 1.19403 0.82583 0.76919 0.88802 1.90653 1.56928 1.49847 1.44668 1.48092 1.04861 1.70007 1.09155 1.19268 0.94599 0.97146 0.76236 1.21402 1.42765 0.92862 0.99385 0.92565 1.24924 0.95549 0.97520 0.96057 1.69923 1.44988 1.32142 1.06382 0.86574 0.78596 0.84965 0.77381 1.20211 1.21178 1.20258 1.20998 0.95141 0.92297 0.89566 1.22890 1.03586 0.98410 0.93171 1.22967 0.96862 1.02057 0.99610 1.22906 0.92133 1.03059 1.03648 0.92891 0.92643 0.92462 0.91400 0.92594 0.93008 0.92321 0.88544 0.88698 0.93994 0.95000 0.92707 0.89758 0.91483 0.87596 0.89331 0.89083 0.88887 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.17 37.15 0.34 -1.07 16 2 C -0.06 -0.71 3.07 -90.62 -0.28 -0.99 16 3 C -0.15 -1.68 9.03 37.16 0.34 -1.34 16 4 C -0.12 -1.69 4.66 -90.62 -0.42 -2.12 16 5 H 0.11 1.88 7.64 -51.93 -0.40 1.49 16 6 C -0.15 -1.91 9.88 -26.75 -0.26 -2.17 16 7 C -0.18 -2.74 4.49 -91.79 -0.41 -3.15 16 8 H 0.11 1.58 5.91 -51.93 -0.31 1.27 16 9 C 0.54 11.47 7.46 -10.99 -0.08 11.39 16 10 O -0.54 -14.09 15.84 5.55 0.09 -14.00 16 11 N -0.59 -12.73 2.46 -175.06 -0.43 -13.16 16 12 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 13 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 17 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.14 2.41 5.52 -4.04 -0.02 2.39 16 22 C -0.16 -2.31 6.01 -90.61 -0.54 -2.85 16 23 C -0.18 -2.01 10.18 -26.73 -0.27 -2.28 16 24 C -0.18 -2.07 10.25 -26.73 -0.27 -2.34 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 29 H 0.05 0.67 7.29 -51.93 -0.38 0.29 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.99 8.05 -51.93 -0.42 0.58 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.08 1.47 8.07 -51.93 -0.42 1.06 16 38 H 0.07 0.96 5.73 -51.93 -0.30 0.67 16 39 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.09 0.94 8.03 -51.93 -0.42 0.53 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -32.30 353.82 -9.26 -41.56 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.62 Total: 1.10 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -2.34 Total: -11.77 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.31 Total: -39.33 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.00 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.30 -9.26 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185315093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.018 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds